MELO3C033061.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033061.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	transmembrane protein 208 homolog
Location	chr08 : 21160192 .. 21160351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCACTCTATGGTGATGACGGTGAACATCTAGATGGTGGATTTGATATGAGTACTGGCGGAATTTGTGGGTATGTCTTCTTTCATCTTAATGTATAACCATTACATGTCAGTTTCATGTATGTTTTTAATTGTTGACTACAGACTTGGCATA

mRNA sequence

ATGGCAAAGCCACTCTATGGTGATGACGGTGAACATCTAGATGGTGGATTTGATATGAGTACTGGCGGAATTTGTGGGTATGTCTTCTTTCATCTTAATGTATAACCATTACATGTCAGTTTCATGTATGTTTTTAATTGTTGACTACAGACTTGGCATA

Coding sequence (CDS)

ATGGCAAAGCCACTCTATGGTGATGACGGTGAACATCTAGATGGTGGATTTGATATGAGTACTGGCGGAATTTGTGGGTATGTCTTCTTTCATCTTAATGTATAA

Protein sequence

MAKPLYGDDGEHLDGGFDMSTGGICGYVFFHLNV

Homology

[Close]

BLAST of MELO3C033061.2 vs. NCBI nr
Match: XP_023522144.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 27/34 (79.41%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   MAKPLYGDDGEHLDGGFDMSTGGICGYVFFHLNV 35
           MA P YGDDGE LDGGFDM TGGICGYV   LNV
Sbjct: 68  MADPTYGDDGELLDGGFDMRTGGICGYVLCLLNV 101

[Close]

BLAST of MELO3C033061.2 vs. NCBI nr
Match: XP_004144713.1 (PREDICTED: transmembrane protein 208 homolog [Cucumis sativus] >KGN61073.1 hypothetical protein Csa_2G036710 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MA+P+YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAQPIYGDDGELLDGGFDMSTGGICGYM 95

[Close]

BLAST of MELO3C033061.2 vs. NCBI nr
Match: XP_021614534.1 (transmembrane protein 208 homolog [Manihot esculenta] >OAY46855.1 hypothetical protein MANES_06G033000 [Manihot esculenta])

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPSYGDDGELLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. NCBI nr
Match: OAY46856.1 (hypothetical protein MANES_06G033000 [Manihot esculenta])

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPSYGDDGELLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. NCBI nr
Match: XP_022888095.1 (transmembrane protein 208-like [Olea europaea var. sylvestris])

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPSYGDDGELLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TAIR10
Match: AT2G23940.1 (Protein of unknown function (DUF788))

HSP 1 Score: 50.4 bits (119), Expect = 2.5e-07
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP   DDGE +DGGFDM+TGGICGY+
Sbjct: 68 MAKPSVTDDGELIDGGFDMTTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TAIR10
Match: AT4G30500.1 (Protein of unknown function (DUF788))

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-06
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP   D GE LDGGFDMST G+CGY+
Sbjct: 68 MAKPSVSDAGELLDGGFDMSTPGMCGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TrEMBL
Match: tr|A0A0A0LH45|A0A0A0LH45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-06
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MA+P+YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAQPIYGDDGELLDGGFDMSTGGICGYM 95

[Close]

BLAST of MELO3C033061.2 vs. TrEMBL
Match: tr|A0A2C9VMN2|A0A2C9VMN2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPSYGDDGELLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TrEMBL
Match: tr|A0A2C9VMI4|A0A2C9VMI4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPSYGDDGELLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TrEMBL
Match: tr|A0A067L3V7|A0A067L3V7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04097 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-06
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP YGDDG+ LDGGFDMSTGGICGY+
Sbjct: 68 MAKPAYGDDGDLLDGGFDMSTGGICGYL 95

[Close]

BLAST of MELO3C033061.2 vs. TrEMBL
Match: tr|A0A0B0MUJ2|A0A0B0MUJ2_GOSAR (Transmembrane protein OS=Gossypium arboreum OX=29729 GN=F383_26599 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-05
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MAKPLYGDDGEHLDGGFDMSTGGICGYV 29
          MAKP Y DDGE LDGGFDMSTGGICGY+
Sbjct: 68 MAKPAYSDDGELLDGGFDMSTGGICGYL 95

The following BLAST results are available for this feature:

BLAST of MELO3C033061.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522144.1	2.9e-06	79.41	transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_004144713.1	5.0e-06	85.71	PREDICTED: transmembrane protein 208 homolog [Cucumis sativus] >KGN61073.1 hypot...	[more]
XP_021614534.1	5.0e-06	89.29	transmembrane protein 208 homolog [Manihot esculenta] >OAY46855.1 hypothetical p...	[more]
OAY46856.1	5.0e-06	89.29	hypothetical protein MANES_06G033000 [Manihot esculenta]	[more]
XP_022888095.1	5.0e-06	89.29	transmembrane protein 208-like [Olea europaea var. sylvestris]	[more]

BLAST of MELO3C033061.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	2.5e-07	75.00	Protein of unknown function (DUF788)	[more]
AT4G30500.1	6.1e-06	71.43	Protein of unknown function (DUF788)	[more]

BLAST of MELO3C033061.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033061.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH45\|A0A0A0LH45_CUCSA	3.3e-06	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1	[more]
tr\|A0A2C9VMN2\|A0A2C9VMN2_MANES	3.3e-06	89.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=...	[more]
tr\|A0A2C9VMI4\|A0A2C9VMI4_MANES	3.3e-06	89.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G033000 PE=4 SV=...	[more]
tr\|A0A067L3V7\|A0A067L3V7_JATCU	5.6e-06	85.71	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04097 PE=4 SV=1	[more]
tr\|A0A0B0MUJ2\|A0A0B0MUJ2_GOSAR	1.3e-05	85.71	Transmembrane protein OS=Gossypium arboreum OX=29729 GN=F383_26599 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033061.2.1	MELO3C033061.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033061.2	Cucumber (Gy14) v2	cgybmedB285
MELO3C033061.2	Cucumber (Gy14) v1	cgymedB577
MELO3C033061.2	Cucurbita maxima (Rimu)	cmamedB698
MELO3C033061.2	Cucurbita maxima (Rimu)	cmamedB909
MELO3C033061.2	Cucurbita moschata (Rifu)	cmomedB689
MELO3C033061.2	Cucurbita moschata (Rifu)	cmomedB897
MELO3C033061.2	Cucurbita pepo (Zucchini)	cpemedB095
MELO3C033061.2	Cucurbita pepo (Zucchini)	cpemedB533
MELO3C033061.2	Wild cucumber (PI 183967)	cpimedB324
MELO3C033061.2	Cucumber (Chinese Long) v2	cumedB321
MELO3C033061.2	Bottle gourd (USVL1VR-Ls)	lsimedB159
MELO3C033061.2	Watermelon (Charleston Gray)	medwcgB522
MELO3C033061.2	Watermelon (97103) v1	medwmB574
MELO3C033061.2	Silver-seed gourd	carmedB0298
MELO3C033061.2	Silver-seed gourd	carmedB0858
MELO3C033061.2	Cucumber (Chinese Long) v3	cucmedB329
MELO3C033061.2	Watermelon (97103) v2	medwmbB526
MELO3C033061.2	Wax gourd	medwgoB667