MELO3C033038.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033038.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description40S ribosomal protein S13-like
Locationchr08 : 19186022 .. 19186166 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAAATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAATCATTTGGAAAGAAACAGGAAGGACAAAGACTCCAAGGTACACATTGTACTCT

mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAAATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAATCATTTGGAAAGAAACAGGAAGGACAAAGACTCCAAGGTACACATTGTACTCT

Coding sequence (CDS)

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAAATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTCTCGATTAGAAATCATTTGGAAAGAAACAGGAAGGACAAAGACTCCAAGGTACACATTGTACTC

Protein sequence

MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL
Homology
[Close]
BLAST of MELO3C033038.2 vs. NCBI nr
Match: ABW90418.1 (putative ribosomal protein S13 [Barentsia elongata])

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L +KGLAPEIPEDLYHLIKK VSIR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. NCBI nr
Match: CDW52158.1 (Coq4 and Ribosomal S13 N and Ribosomal S15 and zf-DNL domain containing protein [Trichuris trichiura])

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L SKGLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 182 ILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLIL 225

[Close]
BLAST of MELO3C033038.2 vs. NCBI nr
Match: KHJ41186.1 (ribosomal protein S15 [Trichuris suis])

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L SKGLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 213 ILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLIL 256

[Close]
BLAST of MELO3C033038.2 vs. NCBI nr
Match: XP_010853977.1 (PREDICTED: 40S ribosomal protein S13-like [Bison bison bison])

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-11
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L SKGLAP++PEDLYHLIKK V++R HLERNRKDKD+K H++L
Sbjct: 74  ILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFHLIL 117

[Close]
BLAST of MELO3C033038.2 vs. NCBI nr
Match: XP_001895245.1 (40S ribosomal protein S13 [Brugia malayi] >CDP93253.1 BMA-RPS-13 [Brugia malayi])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           V +L SKG+APEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TAIR10
Match: AT3G60770.1 (Ribosomal protein S13/S15)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-13
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L + GLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TAIR10
Match: AT4G00100.1 (ribosomal protein S13A)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-13
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L + GLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match: sp|P62299|RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           V +L +KG+APEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match: sp|P62300|RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           V +L +KG+APEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match: sp|P62302|RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L + GLAPEIPEDLYHLIKK VSIR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match: sp|P59223|RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L + GLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match: sp|P59224|RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L + GLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TrEMBL
Match: tr|A0A0N4V0I2|A0A0N4V0I2_ENTVE (Uncharacterized protein OS=Enterobius vermicularis OX=51028 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-11
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           V +L SKG+APEIPEDLYHLIKK VSIR HLERNRKDKDSK  ++L
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TrEMBL
Match: tr|A0A0N5AK96|A0A0N5AK96_9BILA (Uncharacterized protein OS=Syphacia muris OX=451379 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-11
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           V +L SKG+APEIPEDLYHLIKK VSIR HLERNRKDKDSK  ++L
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TrEMBL
Match: tr|A0A077YXH8|A0A077YXH8_TRITR (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Trichuris trichiura OX=36087 GN=TTRE_0000041701 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L SKGLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 182 ILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLIL 225

[Close]
BLAST of MELO3C033038.2 vs. TrEMBL
Match: tr|A0A0N5DS93|A0A0N5DS93_TRIMR (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Trichuris muris OX=70415 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L SKGLAPEIPEDLYHLIKK V+IR HLERNRKDKDSK  ++L
Sbjct: 74  ILKSKGLAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKFRLIL 117

[Close]
BLAST of MELO3C033038.2 vs. TrEMBL
Match: tr|A8UAD8|A8UAD8_9BILA (Putative ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKVVSIRNHLERNRKDKDSKVHIVL 49
           +L +KGLAPEIPEDLYHLIKK VSIR HLERNRKDKDSK  ++L
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL 117

The following BLAST results are available for this feature:
BLAST of MELO3C033038.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ABW90418.17.3e-1179.55putative ribosomal protein S13 [Barentsia elongata][more]
CDW52158.17.3e-1179.55Coq4 and Ribosomal S13 N and Ribosomal S15 and zf-DNL domain containing protein ... [more]
KHJ41186.17.3e-1179.55ribosomal protein S15 [Trichuris suis][more]
XP_010853977.19.5e-1172.73PREDICTED: 40S ribosomal protein S13-like [Bison bison bison][more]
XP_001895245.11.2e-1076.0940S ribosomal protein S13 [Brugia malayi] >CDP93253.1 BMA-RPS-13 [Brugia malayi][more]
BLAST of MELO3C033038.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60770.11.5e-1375.00Ribosomal protein S13/S15[more]
AT4G00100.11.5e-1375.00ribosomal protein S13A[more]
BLAST of MELO3C033038.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P62299|RS13_BRUPA9.0e-1373.9140S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2[more]
sp|P62300|RS13_WUCBA9.0e-1373.9140S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2[more]
sp|P62302|RS13_SOYBN1.2e-1277.2740S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
sp|P59223|RS131_ARATH2.6e-1275.0040S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
sp|P59224|RS132_ARATH2.6e-1275.0040S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
BLAST of MELO3C033038.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0N4V0I2|A0A0N4V0I2_ENTVE3.7e-1178.26Uncharacterized protein OS=Enterobius vermicularis OX=51028 PE=3 SV=1[more]
tr|A0A0N5AK96|A0A0N5AK96_9BILA3.7e-1178.26Uncharacterized protein OS=Syphacia muris OX=451379 PE=3 SV=1[more]
tr|A0A077YXH8|A0A077YXH8_TRITR4.8e-1179.55Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Trichuris trichiu... [more]
tr|A0A0N5DS93|A0A0N5DS93_TRIMR4.8e-1179.55Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Trichuris muris O... [more]
tr|A8UAD8|A8UAD8_9BILA4.8e-1179.55Putative ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR023029Ribosomal_S15P
IPR000589Ribosomal_S15
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033038.2.1MELO3C033038.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.287.10coord: 13..48
e-value: 9.0E-15
score: 56.4
NoneNo IPR availablePANTHERPTHR11885:SF13SUBFAMILY NOT NAMEDcoord: 6..48
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 14..46
e-value: 9.8E-7
score: 28.8
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 6..48
IPR009068S15/NS1, RNA-bindingSUPERFAMILYSSF47060S15/NS1 RNA-binding domaincoord: 8..46

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033038.2Silver-seed gourdcarmedB0199
MELO3C033038.2Silver-seed gourdcarmedB0299
MELO3C033038.2Watermelon (97103) v2medwmbB529
MELO3C033038.2Wax gourdmedwgoB653
MELO3C033038.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033038.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033038.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033038.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033038.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033038.2Cucumber (Chinese Long) v2cumedB326
MELO3C033038.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033038.2Watermelon (Charleston Gray)medwcgB525
MELO3C033038.2Watermelon (97103) v1medwmB578