MELO3C033035.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033035.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein FAR1-RELATED SEQUENCE 4-like
Location	chr08 : 19121220 .. 19122161 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTGAATATAGGTTTTTTTTCTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTAAAGGAAAAAAGTTTATTTCGAAGTAAAGAAGTGCTTTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTACATTATCAAATTTGAGGTCTCTTTAATTTAGATGTCGCAAGAAGGCTACAAATGGTATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGGAAATAAACTTCTGACCGTGATTGTTCATTGAGTACTGCCTAAAGTTCTCACAAGCAAGCTTCTTCAACAGTAATTGGCAATTGTTTAATAGATGATTTTATATACTTGTCTACTGATCATTCTATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGGAAAATAACATATGGTAAAGATATTACACGGTGACACAGTTGAATCGTATGCATTGATTCCAATATTCTTTGATAAATTTGTTCAATCTAACCCGGTATGATTAGTTTTTTATATCAAACTTTTATTGATTTGCAGATAGATGTGGATAGACTAAATAGATGTGGATATTCTTTCTATTCTTTTTTGTTTGTATTGATAGAAATGTGTTTTTAATTATTATAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTTTCTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGCCCTATTATTTCTATTGATGGGACATTTTTTAAGTGTAAATTTGGTGACATCCTATTAACAGCTTCATCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTCTAAAAATGATGCATCATAGACATGGTTTTTTTAGAAGACA

mRNA sequence

ATGTCACTGAATATAGGTTTTTTTTCTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTAAAGGAAAAAAGTTTATTTCGAAGTAAAGAAGtGCTTTCAAAGTGTTTTTGCATAATAGCAGTGAAGAACAACTTTCAATTTAGGACTACATTATCAAATTTGAGGTCTCTTTAATTTAGATGTCGCAAGAAGGCTACAAATGGTATGTAAGGGCATCTCGTTATAAGAAGAGTGATTTGTGGATGCTACGGAAATAAACTTCTGACCGTGATTGTTCATTGAGTACTGCCTAAAGTTCTCACAAATACTTGTCTACTGATCATTCTATTCCTAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGGAAAATAACATATGGTAAAGATATTACACGGTGACACAGTTGAATCGTATGCATTGATTCCAATATTCTTTGATAAATTTGTTCAATCTAACCCGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTTTCTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGCCCTATTATTTCTATTGATGGGACATTTTTTAAGTGTAAATTTGGTGACATCCTATTAACAGCTTCATCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTCTAAAAATGATGCATCATAGACATGGTTTTTTTAGAAGACA

Coding sequence (CDS)

ATGGATGATAGTGGTCATTTCAAGTTTTTTCTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAGCCCTATTATTTCTATTGATGGGACATTTTTTAAGTGTAAATTTGGTGACATCCTATTAACAGCTTCATCACAAGATGGTAACAATCAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTCTAAAAATGATGCATCATAG

Protein sequence

MDDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFAIVDSKNDAS

Homology

[Close]

BLAST of MELO3C033035.2 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MDDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAF 60
           +D + HFK+  MA GASIE W+YC   ISIDGTF   K+G  LLTAS+ D NNQ+FPL F
Sbjct: 77  IDKTRHFKYCFMALGASIESWRYCRHNISIDGTFLTSKYGGTLLTASTCDDNNQMFPLPF 136

Query: 61  AIVDSKNDAS 71
            IVDS+ND S
Sbjct: 137 GIVDSENDVS 146

[Close]

BLAST of MELO3C033035.2 vs. NCBI nr
Match: XP_016900337.1 (PREDICTED: uncharacterized protein LOC107990862 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 12 MAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFAIVDSKNDAS 71
          MA  +SI+GW+YC P I +DGTF KCK+G  LLTA++ DGN++IFPLAF+IVDS+NDAS
Sbjct: 1  MAIASSIDGWRYCRPNIVVDGTFLKCKYGGTLLTAATMDGNSKIFPLAFSIVDSENDAS 59

[Close]

BLAST of MELO3C033035.2 vs. NCBI nr
Match: XP_016902696.1 (PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 2   DDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFA 61
           DD G FKF+ MA  ASI+ W YC P+IS+DG   K K+   L++A + DGN+QI PLAFA
Sbjct: 72  DDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTVDGNSQIVPLAFA 131

Query: 62  IVDSKNDAS 71
           +VDS+ND S
Sbjct: 132 VVDSENDLS 140

[Close]

BLAST of MELO3C033035.2 vs. NCBI nr
Match: XP_009804059.1 (PREDICTED: uncharacterized protein LOC104249347 [Nicotiana sylvestris] >XP_016441588.1 PREDICTED: uncharacterized protein LOC107767182 [Nicotiana tabacum])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MDDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAF 60
           +DD+  F +   A+G+SI GW +C P+IS+D TF K KF D+L+ + S+D NNQIFPLAF
Sbjct: 287 IDDNNRFLYMFYAYGSSISGWNHCRPVISVDATFLKSKFRDVLIISDSKDANNQIFPLAF 346

Query: 61  AIVDSKNDAS 71
            I +S+N+ S
Sbjct: 347 GIAESENNNS 356

[Close]

BLAST of MELO3C033035.2 vs. NCBI nr
Match: XP_022134813.1 (uncharacterized protein LOC111006994 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 2   DDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFA 61
           D++G F++  MA  +SI GWKYC P+IS+DGT  K K+   L++A + D N+QIFPLAF+
Sbjct: 284 DNNGRFZYJFMAXSSSISGWKYCXPVISVDGTSMKNKYAGTLISACTLDANHQIFPLAFS 343

Query: 62  IVDSKNDAS 71
           + DS+NDAS
Sbjct: 344 VXDSENDAS 352

[Close]

BLAST of MELO3C033035.2 vs. TrEMBL
Match: tr|A0A1S4DWH2|A0A1S4DWH2_CUCME (uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 12 MAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFAIVDSKNDAS 71
          MA  +SI+GW+YC P I +DGTF KCK+G  LLTA++ DGN++IFPLAF+IVDS+NDAS
Sbjct: 1  MAIASSIDGWRYCRPNIVVDGTFLKCKYGGTLLTAATMDGNSKIFPLAFSIVDSENDAS 59

[Close]

BLAST of MELO3C033035.2 vs. TrEMBL
Match: tr|A0A1S4E392|A0A1S4E392_CUCME (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.0e-15
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 2   DDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFA 61
           DD G FKF+ MA  ASI+ W YC P+IS+DG   K K+   L++A + DGN+QI PLAFA
Sbjct: 72  DDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISACTVDGNSQIVPLAFA 131

Query: 62  IVDSKNDAS 71
           +VDS+ND S
Sbjct: 132 VVDSENDLS 140

[Close]

BLAST of MELO3C033035.2 vs. TrEMBL
Match: tr|A0A1S3XNU7|A0A1S3XNU7_TOBAC (uncharacterized protein LOC107767182 OS=Nicotiana tabacum OX=4097 GN=LOC107767182 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MDDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAF 60
           +DD+  F +   A+G+SI GW +C P+IS+D TF K KF D+L+ + S+D NNQIFPLAF
Sbjct: 287 IDDNNRFLYMFYAYGSSISGWNHCRPVISVDATFLKSKFRDVLIISDSKDANNQIFPLAF 346

Query: 61  AIVDSKNDAS 71
            I +S+N+ S
Sbjct: 347 GIAESENNNS 356

[Close]

BLAST of MELO3C033035.2 vs. TrEMBL
Match: tr|A0A1U7YY21|A0A1U7YY21_NICSY (uncharacterized protein LOC104249347 OS=Nicotiana sylvestris OX=4096 GN=LOC104249347 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MDDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAF 60
           +DD+  F +   A+G+SI GW +C P+IS+D TF K KF D+L+ + S+D NNQIFPLAF
Sbjct: 287 IDDNNRFLYMFYAYGSSISGWNHCRPVISVDATFLKSKFRDVLIISDSKDANNQIFPLAF 346

Query: 61  AIVDSKNDAS 71
            I +S+N+ S
Sbjct: 347 GIAESENNNS 356

[Close]

BLAST of MELO3C033035.2 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 2   DDSGHFKFFLMAFGASIEGWKYCSPIISIDGTFFKCKFGDILLTASSQDGNNQIFPLAFA 61
           DD G FKF+ MA   SI+ W YC P+IS+DG   K K+   L++A + DGN+QI PLAFA
Sbjct: 231 DDEGRFKFYFMALATSIDAWNYCVPVISVDGATMKNKYLGTLISACTIDGNSQIMPLAFA 290

Query: 62  IVDSKNDAS 71
           +VDS+ND S
Sbjct: 291 VVDSENDLS 299

The following BLAST results are available for this feature:

BLAST of MELO3C033035.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155934.1	1.1e-15	61.43	uncharacterized protein LOC111022933 [Momordica charantia]	[more]
XP_016900337.1	1.9e-15	66.10	PREDICTED: uncharacterized protein LOC107990862 [Cucumis melo]	[more]
XP_016902696.1	1.2e-14	56.52	PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]	[more]
XP_009804059.1	1.6e-14	51.43	PREDICTED: uncharacterized protein LOC104249347 [Nicotiana sylvestris] >XP_01644...	[more]
XP_022134813.1	1.6e-14	53.62	uncharacterized protein LOC111006994 [Momordica charantia]	[more]

BLAST of MELO3C033035.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C033035.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C033035.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWH2\|A0A1S4DWH2_CUCME	1.2e-15	66.10	uncharacterized protein LOC107990862 OS=Cucumis melo OX=3656 GN=LOC107990862 PE=...	[more]
tr\|A0A1S4E392\|A0A1S4E392_CUCME	8.0e-15	56.52	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
tr\|A0A1S3XNU7\|A0A1S3XNU7_TOBAC	1.0e-14	51.43	uncharacterized protein LOC107767182 OS=Nicotiana tabacum OX=4097 GN=LOC10776718...	[more]
tr\|A0A1U7YY21\|A0A1U7YY21_NICSY	1.0e-14	51.43	uncharacterized protein LOC104249347 OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]
tr\|A0A1S4E0D5\|A0A1S4E0D5_CUCME	2.3e-14	55.07	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018289	MULE_transposase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033035.2.1	MELO3C033035.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 27..69 e-value: 1.6E-7 score: 31.5
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 2..68

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033035.2	Cucurbita maxima (Rimu)	cmamedB908
MELO3C033035.2	Cucurbita moschata (Rifu)	cmomedB691
MELO3C033035.2	Cucurbita moschata (Rifu)	cmomedB898
MELO3C033035.2	Cucurbita pepo (Zucchini)	cpemedB094
MELO3C033035.2	Cucurbita pepo (Zucchini)	cpemedB534
MELO3C033035.2	Wild cucumber (PI 183967)	cpimedB315
MELO3C033035.2	Bottle gourd (USVL1VR-Ls)	lsimedB161
MELO3C033035.2	Watermelon (Charleston Gray)	medwcgB525
MELO3C033035.2	Watermelon (97103) v1	medwmB578
MELO3C033035.2	Silver-seed gourd	carmedB0199
MELO3C033035.2	Silver-seed gourd	carmedB0299
MELO3C033035.2	Watermelon (97103) v2	medwmbB529
MELO3C033035.2	Wax gourd	medwgoB653