MELO3C033030.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033030.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPHD finger alfin-like protein
Locationchr08 : 18532351 .. 18532621 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACACTTTTTGATGTGATGTAATTTACTGTGTTGATTACTCGGATTGGTTACATATTCTATCTTTCAAGAATTTTCAGAGTGAAGCTGAAATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTAGAGACGTATGAAGAAGATAAAGACGAGCACAGTGACATCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA

mRNA sequence

TGACACTTTTTGATGTGATGTAATTTACTGTGTTGATTACTCGGATTGGTTACATATTCTATCTTTCAAGAATTTTCAGAGTGAAGCTGAAATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTAGAGACGTATGAAGAAGATAAAGACGAGCACAGTGACATCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAAGGAAAGAGGTAGAGACGTATGAAGAAGATAAAGACGAGCACAGTGACATCTTATGTAGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGTTGTGATATCTATGAGAAATGGTTCCATGGGAAATTTGTTGTATGA

Protein sequence

MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Homology
[Close]
BLAST of MELO3C033030.2 vs. NCBI nr
Match: XP_016903323.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 60
          MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]
BLAST of MELO3C033030.2 vs. NCBI nr
Match: XP_004141692.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KGN45504.1 hypothetical protein Csa_7G450620 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1   MQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. NCBI nr
Match: XP_008462330.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2   QGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]
BLAST of MELO3C033030.2 vs. NCBI nr
Match: XP_008462331.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2   QGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. NCBI nr
Match: XP_022992372.1 (PHD finger protein ALFIN-LIKE 3-like [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 0 

Query: 1   MQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG   RQ  AR+EVET YEED+DEH D LC ACGENYA+DEFWICCDI EKWFHGK V
Sbjct: 168 MQGVYVRQPLAREEVETLYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. TAIR10
Match: AT5G05610.1 (alfin-like 1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-14
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 16  ETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE++ DEH D LC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]
BLAST of MELO3C033030.2 vs. TAIR10
Match: AT5G20510.1 (alfin-like 5)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-11
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 27  DILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           + LC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 204 ETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]
BLAST of MELO3C033030.2 vs. TAIR10
Match: AT2G02470.1 (alfin-like 6)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-10
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0 

Query: 29  LCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +C ACG+NY +DEFWICCD  EKWFHGK V
Sbjct: 202 VCGACGDNYGTDEFWICCDACEKWFHGKCV 231

[Close]
BLAST of MELO3C033030.2 vs. TAIR10
Match: AT1G14510.1 (alfin-like 7)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-10
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 29  LCRACGENYASDEFWICCDIYEKWFHGKFV 59
           +C ACG+NY  DEFWICCD  EKWFHGK V
Sbjct: 197 VCGACGDNYGGDEFWICCDACEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. TAIR10
Match: AT5G26210.1 (alfin-like 4)

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-10
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 30  CRACGENYASDEFWICCDIYEKWFHGKFV 59
           C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 202 CGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match: sp|Q9FFF5|ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-13
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 16  ETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           E+YE++ DEH D LC +CG NY +DEFWICCD+ E+W+HGK V
Sbjct: 174 ESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match: sp|A2Y0Q2|ALFL1_ORYSI (PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-10
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 8   QSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           ++  ++E E Y+ED  +HS+ LC  CG  Y++DEFWI CD+ E+W+HGK V
Sbjct: 183 ENNIKEEDEGYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCV 233

[Close]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match: sp|Q75IR6|ALFL1_ORYSJ (PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0163100 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-10
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 8   QSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           ++  ++E E Y+ED  +HS+ LC  CG  Y++DEFWI CD+ E+W+HGK V
Sbjct: 183 ENNIKEEDEGYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCV 233

[Close]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match: sp|Q5XEM9|ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-10
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 27  DILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           + LC ACG+NYASDEFWICCD+ EKWFHG+ V
Sbjct: 204 ETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match: sp|B8B8C5|ALFL9_ORYSI (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 27  DILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           + LC ACGE+Y +DEFWICCDI EKWFHGK V
Sbjct: 208 ETLCGACGESYGADEFWICCDICEKWFHGKCV 239

[Close]
BLAST of MELO3C033030.2 vs. TrEMBL
Match: tr|A0A1S4E514|A0A1S4E514_CUCME (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.1e-28
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 60
          MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV
Sbjct: 39 MQGTCARQSQARKEVETYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFVV 97

[Close]
BLAST of MELO3C033030.2 vs. TrEMBL
Match: tr|A0A0A0K9L1|A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1   MQGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           MQG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. TrEMBL
Match: tr|A0A1S3CI87|A0A1S3CI87_CUCME (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2   QGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]
BLAST of MELO3C033030.2 vs. TrEMBL
Match: tr|A0A1S3CGR0|A0A1S3CGR0_CUCME (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-19
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0 

Query: 2   QGTCARQSQARKEVET-YEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  ARQSQAR+EVET YEED+DEH D LC ACGENYASDEFWICCDI EKWFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C033030.2 vs. TrEMBL
Match: tr|A0A2P6Q1H7|A0A2P6Q1H7_ROSCH (Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0311511 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-14
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 2   QGTCARQSQARKEVE--TYEEDKDEHSDILCRACGENYASDEFWICCDIYEKWFHGKFV 59
           QG  A+  QAR++ E  T +ED+DEH + LC ACGENYASDEFWICCD+ EKWFHGK V
Sbjct: 170 QGKYAKVMQAREDYEDGTEDEDEDEHGETLCGACGENYASDEFWICCDVCEKWFHGKCV 228

The following BLAST results are available for this feature:
BLAST of MELO3C033030.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903323.16.2e-28100.00PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo][more]
XP_004141692.12.3e-1983.05PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KG... [more]
XP_008462330.11.2e-1882.76PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
XP_008462331.11.2e-1882.76PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo][more]
XP_022992372.12.9e-1776.27PHD finger protein ALFIN-LIKE 3-like [Cucurbita maxima][more]
BLAST of MELO3C033030.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G05610.14.7e-1462.79alfin-like 1[more]
AT5G20510.14.9e-1175.00alfin-like 5[more]
AT2G02470.15.4e-1073.33alfin-like 6[more]
AT1G14510.17.0e-1073.33alfin-like 7[more]
AT5G26210.19.2e-1075.86alfin-like 4[more]
BLAST of MELO3C033030.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFF5|ALFL1_ARATH8.5e-1362.79PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1[more]
sp|A2Y0Q2|ALFL1_ORYSI6.7e-1049.02PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18... [more]
sp|Q75IR6|ALFL1_ORYSJ6.7e-1049.02PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05... [more]
sp|Q5XEM9|ALFL5_ARATH8.8e-1075.00PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1[more]
sp|B8B8C5|ALFL9_ORYSI1.5e-0975.00PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26... [more]
BLAST of MELO3C033030.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E514|A0A1S4E514_CUCME4.1e-28100.00PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=... [more]
tr|A0A0A0K9L1|A0A0A0K9L1_CUCSA1.5e-1983.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=4 SV=1[more]
tr|A0A1S3CI87|A0A1S3CI87_CUCME7.7e-1982.76PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CGR0|A0A1S3CGR0_CUCME7.7e-1982.76PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2P6Q1H7|A0A2P6Q1H7_ROSCH4.4e-1466.10Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_C... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0042393 histone binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033030.2.1MELO3C033030.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 22..59
e-value: 4.2E-11
score: 43.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR12321:SF98PHD FINGER PROTEIN ALFIN-LIKE 3-RELATEDcoord: 6..58
NoneNo IPR availablePANTHERPTHR12321CPG BINDING PROTEINcoord: 6..58
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILYSSF57903FYVE/PHD zinc fingercoord: 11..55

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033030.2Cucumber (Gy14) v2cgybmedB281
MELO3C033030.2Cucumber (Gy14) v1cgymedB282
MELO3C033030.2Cucurbita maxima (Rimu)cmamedB908
MELO3C033030.2Cucurbita moschata (Rifu)cmomedB691
MELO3C033030.2Cucurbita moschata (Rifu)cmomedB898
MELO3C033030.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C033030.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C033030.2Wild cucumber (PI 183967)cpimedB315
MELO3C033030.2Cucumber (Chinese Long) v2cumedB313
MELO3C033030.2Bottle gourd (USVL1VR-Ls)lsimedB161
MELO3C033030.2Silver-seed gourdcarmedB0199
MELO3C033030.2Silver-seed gourdcarmedB0299
MELO3C033030.2Cucumber (Chinese Long) v3cucmedB322
MELO3C033030.2Wax gourdmedwgoB653