MELO3C033020.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C033020.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionZf-CCHC domain-containing protein
Locationchr08 : 17471691 .. 17472061 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAATGAGATTGTTGCGGAATATGGGAAGAAGTTTATGGAGTTAGCAAGGTATGCAATAACCTTCATAATGAATGAAGAGGATAAGTGTATGCATTTTGAAGAAGGCCTAAGAATATCAATTCGAGCTTTAGTGATGGCATGTGCAGGCTCGTTAGATTTTTCTAAGTTGGTTGAGGCAGCCATACGCATTGAGTAATGTTTGGTTGAGGAAGATGAAGAGAAAATGGTAGAAGGAGAAGAGTCAAGTCCATTGTTGGATAGAGGACAAGAAAAGGAAGACAACAAAGAAGCAGAGAAGTGGACTATGTTTTGCTTTAGGCAAGGATCGCATTGGTTTGGCGATAATAGACCAAGGTGTTCGGAGTGTGGA

mRNA sequence

GCAATGAGATTGTTGCGGAATATGGGAAGAAGTTTATGGAGTTAGCAAGGTATGCAATAACCTTCATAATGAATGAAGAGGATAAGTGTATGCATTTTGAAGAAGGCCTAAGAATATCAATTCGAGCTTTAGTGATGGCATGTGCAGGCTCGTTAGATTTTTCTAAGTTGGTTGAGGCAGCCATACGCATTGAGTAATGTTTGGTTGAGGAAGATGAAGAGAAAATGGTAGAAGGAGAAGAGTCAAGTCCATTGTTGGATAGAGGACAAGAAAAGGAAGACAACAAAGAAGCAGAGAAGTGGACTATGTTTTGCTTTAGGCAAGGATCGCATTGGTTTGGCGATAATAGACCAAGGTGTTCGGAGTGTGGA

Coding sequence (CDS)

ATGGAGTTAGCAAGGTATGCAATAACCTTCATAATGAATGAAGAGGATAAGTGTATGCATTTTGAAGAAGGCCTAAGAATATCAATTCGAGCTTTAGTGATGGCATGTGCAGGCTCGTTAGATTTTTCTAAGTTGGTTGAGGCAGCCATACGCATTGAGTAA

Protein sequence

MELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE
BLAST of MELO3C033020.2 vs. NCBI nr
Match: XP_011654404.1 (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-06
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 2  ELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
          +L++YA + I +E ++C  FEEGLR  IR LV ACA  +DFSK +EAA+R+E
Sbjct: 12 KLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAALRVE 63

BLAST of MELO3C033020.2 vs. NCBI nr
Match: XP_016903324.1 (PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-05
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 2   ELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           EL+RYA   + +E D+C  FE GLR  IR LV   A   DFS+LVE A+R+E
Sbjct: 119 ELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAKWTDFSQLVETALRVE 170

BLAST of MELO3C033020.2 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-04
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2   ELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           EL+RYA   + +E D+C  FE GLR  IR  + A A  ++FS+LVE A+R+E
Sbjct: 67  ELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRVE 118

BLAST of MELO3C033020.2 vs. NCBI nr
Match: XP_022863736.1 (uncharacterized protein LOC111383805 [Olea europaea var. sylvestris])

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 1   MELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           +EL++YA   + NE DKC  FE GLR  IR++V A  G  +F KLVE+A+R+E
Sbjct: 176 IELSKYAQVLVCNEIDKCRRFENGLREEIRSVVTA-VGWNEFGKLVESALRVE 227

BLAST of MELO3C033020.2 vs. NCBI nr
Match: XP_022846657.1 (uncharacterized protein LOC111369392 isoform X1 [Olea europaea var. sylvestris] >XP_022846658.1 uncharacterized protein LOC111369392 isoform X1 [Olea europaea var. sylvestris])

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 1   MELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           +EL++YA   + NE DKC  FE GLR  IR++V A AG   F KLVE+A+R+E
Sbjct: 190 IELSKYAQVLVSNEIDKCRRFENGLREEIRSVVTA-AGWNVFGKLVESALRVE 241

BLAST of MELO3C033020.2 vs. TrEMBL
Match: tr|A0A1S4E521|A0A1S4E521_CUCME (uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 2   ELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           EL+RYA   + +E D+C  FE GLR  IR LV   A   DFS+LVE A+R+E
Sbjct: 119 ELSRYAEMIVASESDRCRSFERGLRFEIRTLVTVIAKWTDFSQLVETALRVE 170

BLAST of MELO3C033020.2 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2   ELARYAITFIMNEEDKCMHFEEGLRISIRALVMACAGSLDFSKLVEAAIRIE 54
           EL+RYA   + +E D+C  FE GLR  IR  + A A  ++FS+LVE A+R+E
Sbjct: 67  ELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETALRVE 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654404.14.6e-0653.85PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
XP_016903324.13.9e-0551.92PREDICTED: uncharacterized protein LOC103502804 [Cucumis melo][more]
XP_008464978.12.5e-0448.08PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
XP_022863736.13.3e-0450.94uncharacterized protein LOC111383805 [Olea europaea var. sylvestris][more]
XP_022846657.14.3e-0452.83uncharacterized protein LOC111369392 isoform X1 [Olea europaea var. sylvestris] ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E521|A0A1S4E521_CUCME2.5e-0551.92uncharacterized protein LOC103502804 OS=Cucumis melo OX=3656 GN=LOC103502804 PE=... [more]
tr|A0A1S3CMU0|A0A1S3CMU0_CUCME1.7e-0448.08uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033020.2.1MELO3C033020.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None