MELO3C033012.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C033012.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	PHD finger alfin-like protein
Location	chr08 : 16873266 .. 16873511 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTAGTTATGATAATGTTTGTTGCTCTGCTAATGTTAAGATAATGTTTTCAGAGGGAAGCTGAAATGCAAGGAATGTATGCAAGGCAGTCGCGGACAAGGGAAGAGGTAGAGACATTGTATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

mRNA sequence

TACTAGTTATGATAATGTTTGTTGCTCTGCTAATGTTAAGATAATGTTTTCAGAGGGAAGCTGAAATGCAAGGAATGTATGCAAGGCAGTCGCGGACAAGGGAAGAGGTAGAGACATTGTATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

Coding sequence (CDS)

ATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

Protein sequence

MKKMKTSMVTPYVGHAVNYTSDEFWICCDICEKWFHEKFVV

Homology

[Close]

BLAST of MELO3C033012.2 vs. NCBI nr
Match: XP_016903323.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-04
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 18 NYTSDEFWICCDICEKWFHEKFVV 42
          NY SDEFWICCDI EKWFH KFVV
Sbjct: 74 NYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C033012.2 vs. NCBI nr
Match: XP_003633111.1 (PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera] >CBI27844.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 205 NYASDEFWICCDICEKWFHGKCV 227

[Close]

BLAST of MELO3C033012.2 vs. NCBI nr
Match: ABO82473.1 (unknown, partial [Helianthus annuus] >ABO82474.1 unknown, partial [Helianthus annuus] >ABO82475.1 unknown, partial [Helianthus annuus] >ABO82476.1 unknown, partial [Helianthus annuus] >ABO82477.1 unknown, partial [Helianthus annuus] >ABO82478.1 unknown, partial [Helianthus annuus] >ABO82479.1 unknown, partial [Helianthus annuus] >ABO82480.1 unknown, partial [Helianthus annuus] >ABO82481.1 unknown, partial [Helianthus annuus] >ABO82482.1 unknown, partial [Helianthus annuus] >ABO82483.1 unknown, partial [Helianthus annuus] >ABO82484.1 unknown, partial [Helianthus annuus] >ABO82485.1 unknown, partial [Helianthus annuus] >ABO82486.1 unknown, partial [Helianthus annuus] >ABO82487.1 unknown, partial [Helianthus annuus] >ABO82488.1 unknown, partial [Helianthus annuus] >ABO82489.1 unknown, partial [Helianthus annuus] >ABO82490.1 unknown, partial [Helianthus petiolaris] >ABO82491.1 unknown, partial [Helianthus petiolaris] >ABO82492.1 unknown, partial [Helianthus petiolaris] >ABO82493.1 unknown, partial [Helianthus petiolaris] >ABO82494.1 unknown, partial [Helianthus petiolaris] >ABO82495.1 unknown, partial [Helianthus petiolaris] >ABO82496.1 unknown, partial [Helianthus petiolaris] >ABO82497.1 unknown, partial [Helianthus petiolaris] >ABO82498.1 unknown, partial [Helianthus petiolaris] >ABO82499.1 unknown, partial [Helianthus petiolaris] >ABO82500.1 unknown, partial [Helianthus petiolaris] >ABO82501.1 unknown, partial [Helianthus petiolaris] >ABO82502.1 unknown, partial [Helianthus petiolaris] >ABO82503.1 unknown, partial [Helianthus anomalus] >ABO82504.1 unknown, partial [Helianthus anomalus] >ABO82505.1 unknown, partial [Helianthus anomalus] >ABO82506.1 unknown, partial [Helianthus anomalus] >ABO82507.1 unknown, partial [Helianthus anomalus] >ABO82508.1 unknown, partial [Helianthus anomalus] >ABO82509.1 unknown, partial [Helianthus anomalus] >ABO82510.1 unknown, partial [Helianthus anomalus] >ABO82511.1 unknown, partial [Helianthus anomalus] >ABO82512.1 unknown, partial [Helianthus anomalus] >ABO82513.1 unknown, partial [Helianthus anomalus] >ABO82514.1 unknown, partial [Helianthus anomalus] >ABO82515.1 unknown, partial [Helianthus anomalus] >ABO82516.1 unknown, partial [Helianthus anomalus] >ABO82517.1 unknown, partial [Helianthus anomalus] >ABO82518.1 unknown, partial [Helianthus anomalus])

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18 NYTSDEFWICCDICEKWFHEKFV 41
          NY SDEFWICCDICEKWFH K V
Sbjct: 8  NYASDEFWICCDICEKWFHGKCV 30

[Close]

BLAST of MELO3C033012.2 vs. NCBI nr
Match: ACU14823.1 (unknown [Glycine max])

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 201 NYASDEFWICCDICEKWFHGKCV 223

[Close]

BLAST of MELO3C033012.2 vs. NCBI nr
Match: XP_004141692.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KGN45504.1 hypothetical protein Csa_7G450620 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 204 NYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C033012.2 vs. TAIR10
Match: AT5G05610.1 (alfin-like 1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-07
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NYT+DEFWICCD+CE+W+H K V
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C033012.2 vs. TAIR10
Match: AT5G20510.1 (alfin-like 5)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-07
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCD+CEKWFH + V
Sbjct: 213 NYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C033012.2 vs. TAIR10
Match: AT2G02470.1 (alfin-like 6)

HSP 1 Score: 49.3 bits (116), Expect = 6.6e-07
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD CEKWFH K V
Sbjct: 209 NYGTDEFWICCDACEKWFHGKCV 231

[Close]

BLAST of MELO3C033012.2 vs. TAIR10
Match: AT1G14510.1 (alfin-like 7)

HSP 1 Score: 48.9 bits (115), Expect = 8.6e-07
Identity = 18/23 (78.26%), Postives = 18/23 (78.26%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY  DEFWICCD CEKWFH K V
Sbjct: 204 NYGGDEFWICCDACEKWFHGKCV 226

[Close]

BLAST of MELO3C033012.2 vs. TAIR10
Match: AT3G11200.1 (alfin-like 2)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-06
Identity = 15/23 (65.22%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           +YT++EFWICCD+CE+W+H K V
Sbjct: 199 HYTNEEFWICCDVCERWYHGKCV 221

[Close]

BLAST of MELO3C033012.2 vs. Swiss-Prot
Match: sp|Q9FFF5|ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.1e-06
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NYT+DEFWICCD+CE+W+H K V
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C033012.2 vs. Swiss-Prot
Match: sp|Q5XEM9|ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.3e-06
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCD+CEKWFH + V
Sbjct: 213 NYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C033012.2 vs. Swiss-Prot
Match: sp|Q40359|ALFIN_MEDSA (PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.0e-06
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD+CEKWFH K V
Sbjct: 209 NYGTDEFWICCDMCEKWFHGKCV 231

[Close]

BLAST of MELO3C033012.2 vs. Swiss-Prot
Match: sp|Q8S8M9|ALFL6_ARATH (PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD CEKWFH K V
Sbjct: 209 NYGTDEFWICCDACEKWFHGKCV 231

[Close]

BLAST of MELO3C033012.2 vs. Swiss-Prot
Match: sp|B8B8C5|ALFL9_ORYSI (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           +Y +DEFWICCDICEKWFH K V
Sbjct: 217 SYGADEFWICCDICEKWFHGKCV 239

[Close]

BLAST of MELO3C033012.2 vs. TrEMBL
Match: tr|A0A2N9GLH5|A0A2N9GLH5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28161 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.5e-05
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 2   KKMKTSMVTPYVGH-AVNYTSDEFWICCDICEKWFHEKFV 41
           K+MK S V P  G    NY +DEFWI CDICEKWFH K V
Sbjct: 157 KRMKMSTVKPLCGSCGGNYNADEFWIGCDICEKWFHGKCV 196

[Close]

BLAST of MELO3C033012.2 vs. TrEMBL
Match: tr|A0A1S4E514|A0A1S4E514_CUCME (PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-04
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 18 NYTSDEFWICCDICEKWFHEKFVV 42
          NY SDEFWICCDI EKWFH KFVV
Sbjct: 74 NYASDEFWICCDIYEKWFHGKFVV 97

[Close]

BLAST of MELO3C033012.2 vs. TrEMBL
Match: tr|A0A1U8A4B7|A0A1U8A4B7_NELNU (PHD finger protein ALFIN-LIKE 4 OS=Nelumbo nucifera OX=4432 GN=LOC104600621 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 205 NYASDEFWICCDICEKWFHGKCV 227

[Close]

BLAST of MELO3C033012.2 vs. TrEMBL
Match: tr|B9HD31|B9HD31_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G223500v3 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 206 NYASDEFWICCDICEKWFHGKCV 228

[Close]

BLAST of MELO3C033012.2 vs. TrEMBL
Match: tr|I1LY29|I1LY29_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500110 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-04
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0


Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCDICEKWFH K V
Sbjct: 204 NYASDEFWICCDICEKWFHGKCV 226

The following BLAST results are available for this feature:

BLAST of MELO3C033012.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903323.1	1.9e-04	87.50	PREDICTED: PHD finger protein ALFIN-LIKE 3-like [Cucumis melo]	[more]
XP_003633111.1	2.5e-04	86.96	PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera] >CBI27844...	[more]
ABO82473.1	2.5e-04	86.96	unknown, partial [Helianthus annuus] >ABO82474.1 unknown, partial [Helianthus an...	[more]
ACU14823.1	2.5e-04	86.96	unknown [Glycine max]	[more]
XP_004141692.1	2.5e-04	86.96	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus] >KG...	[more]

BLAST of MELO3C033012.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05610.1	1.7e-07	73.91	alfin-like 1	[more]
AT5G20510.1	3.0e-07	78.26	alfin-like 5	[more]
AT2G02470.1	6.6e-07	78.26	alfin-like 6	[more]
AT1G14510.1	8.6e-07	78.26	alfin-like 7	[more]
AT3G11200.1	1.9e-06	65.22	alfin-like 2	[more]

BLAST of MELO3C033012.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFF5\|ALFL1_ARATH	3.1e-06	73.91	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
sp\|Q5XEM9\|ALFL5_ARATH	5.3e-06	78.26	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1	[more]
sp\|Q40359\|ALFIN_MEDSA	7.0e-06	78.26	PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1	[more]
sp\|Q8S8M9\|ALFL6_ARATH	1.2e-05	78.26	PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1	[more]
sp\|B8B8C5\|ALFL9_ORYSI	1.2e-05	78.26	PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26...	[more]

BLAST of MELO3C033012.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9GLH5\|A0A2N9GLH5_FAGSY	7.5e-05	62.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28161 PE=4 SV=1	[more]
tr\|A0A1S4E514\|A0A1S4E514_CUCME	1.3e-04	87.50	PHD finger protein ALFIN-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC107992128 PE=...	[more]
tr\|A0A1U8A4B7\|A0A1U8A4B7_NELNU	1.7e-04	86.96	PHD finger protein ALFIN-LIKE 4 OS=Nelumbo nucifera OX=4432 GN=LOC104600621 PE=4...	[more]
tr\|B9HD31\|B9HD31_POPTR	1.7e-04	86.96	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G223500v3 PE=...	[more]
tr\|I1LY29\|I1LY29_SOYBN	1.7e-04	86.96	Uncharacterized protein OS=Glycine max OX=3847 GN=100500110 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011011	Znf_FYVE_PHD
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033012.2.1	MELO3C033012.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 4..41 e-value: 4.5E-10 score: 40.6
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	coord: 18..38

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C033012.2	Wax gourd	medwgoB649
MELO3C033012.2	Cucumber (Gy14) v2	cgybmedB281
MELO3C033012.2	Cucurbita maxima (Rimu)	cmamedB708
MELO3C033012.2	Cucurbita moschata (Rifu)	cmomedB699
MELO3C033012.2	Cucurbita pepo (Zucchini)	cpemedB085
MELO3C033012.2	Wild cucumber (PI 183967)	cpimedB315
MELO3C033012.2	Cucumber (Chinese Long) v2	cumedB313
MELO3C033012.2	Bottle gourd (USVL1VR-Ls)	lsimedB166
MELO3C033012.2	Watermelon (Charleston Gray)	medwcgB530
MELO3C033012.2	Silver-seed gourd	carmedB0200
MELO3C033012.2	Cucumber (Chinese Long) v3	cucmedB322
MELO3C033012.2	Watermelon (97103) v2	medwmbB535