MELO3C033001.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033001.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr08 : 15814244 .. 15814572 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTCCAATGAAAATGTGAAATTAGACGGATCTTTGAATCTCGCATCGAAAATGAAGTGGAAGATCCAGAGAATGATGAAAAGGACGATGAGGAAAGAGATAAAGATGTGGATTATGCATCATCTTCCATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

mRNA sequence

ATGCTCTTCCAATGAAAATGTGAAATTAGACGGATCTTTGAATCTCGCATCGAAAATGAAGTGGAAGATCCAGAGAATGATGAAAAGGACGATGAGGAAAGAGATAAAGATGTGGATTATGCATCATCTTCCATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

Coding sequence (CDS)

ATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAG

Protein sequence

MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPKVRLRREGRK
Homology
[Close]
BLAST of MELO3C033001.2 vs. NCBI nr
Match: XP_008449922.1 (PREDICTED: uncharacterized protein LOC103491651 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSD-RTAEEEEKIESSSDSTLNPKVRL 60
           +PS  KNALI TRC+S P RSSFNDNRY + SITSD  T EEEEK E    +    K+ L
Sbjct: 150 VPSPPKNALILTRCRSTPNRSSFNDNRYRSSSITSDGSTVEEEEKTERGFGNNTASKIEL 209

Query: 61  RREGR 65
           R   R
Sbjct: 210 RNSER 214

[Close]
BLAST of MELO3C033001.2 vs. NCBI nr
Match: KGN48131.1 (hypothetical protein Csa_6G439970 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 4.0e-04
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRT--AEEEEKIESSSDSTLNPKVR 60
           +PS  KNALI +RC+SAP RSSFN  RY + SITSD T   EEEEK E    +    K+ 
Sbjct: 150 VPSPPKNALILSRCRSAPNRSSFNGTRYRSSSITSDGTVEVEEEEKTEGGFRNNAASKIE 209

Query: 61  LRREGR 65
           L +  R
Sbjct: 210 LGKSER 215

[Close]
BLAST of MELO3C033001.2 vs. NCBI nr
Match: XP_011658465.1 (PREDICTED: uncharacterized protein LOC105436016 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 4.0e-04
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRT--AEEEEKIESSSDSTLNPKVR 60
           +PS  KNALI +RC+SAP RSSFN  RY + SITSD T   EEEEK E    +    K+ 
Sbjct: 45  VPSPPKNALILSRCRSAPNRSSFNGTRYRSSSITSDGTVEVEEEEKTEGGFRNNAASKIE 104

Query: 61  LRREGR 65
           L +  R
Sbjct: 105 LGKSER 110

[Close]
BLAST of MELO3C033001.2 vs. TrEMBL
Match: tr|A0A1S3BN59|A0A1S3BN59_CUCME (uncharacterized protein LOC103491651 OS=Cucumis melo OX=3656 GN=LOC103491651 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSD-RTAEEEEKIESSSDSTLNPKVRL 60
           +PS  KNALI TRC+S P RSSFNDNRY + SITSD  T EEEEK E    +    K+ L
Sbjct: 150 VPSPPKNALILTRCRSTPNRSSFNDNRYRSSSITSDGSTVEEEEKTERGFGNNTASKIEL 209

Query: 61  RREGR 65
           R   R
Sbjct: 210 RNSER 214

[Close]
BLAST of MELO3C033001.2 vs. TrEMBL
Match: tr|A0A0A0KK43|A0A0A0KK43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439970 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-04
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRT--AEEEEKIESSSDSTLNPKVR 60
           +PS  KNALI +RC+SAP RSSFN  RY + SITSD T   EEEEK E    +    K+ 
Sbjct: 150 VPSPPKNALILSRCRSAPNRSSFNGTRYRSSSITSDGTVEVEEEEKTEGGFRNNAASKIE 209

Query: 61  LRREGR 65
           L +  R
Sbjct: 210 LGKSER 215

The following BLAST results are available for this feature:
BLAST of MELO3C033001.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449922.11.9e-0656.92PREDICTED: uncharacterized protein LOC103491651 [Cucumis melo][more]
KGN48131.14.0e-0451.52hypothetical protein Csa_6G439970 [Cucumis sativus][more]
XP_011658465.14.0e-0451.52PREDICTED: uncharacterized protein LOC105436016 [Cucumis sativus][more]
BLAST of MELO3C033001.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033001.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033001.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BN59|A0A1S3BN59_CUCME1.3e-0656.92uncharacterized protein LOC103491651 OS=Cucumis melo OX=3656 GN=LOC103491651 PE=... [more]
tr|A0A0A0KK43|A0A0A0KK43_CUCSA2.6e-0451.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439970 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033001.2.1MELO3C033001.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..65

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033001.2Cucurbita maxima (Rimu)cmamedB911
MELO3C033001.2Cucurbita moschata (Rifu)cmomedB899
MELO3C033001.2Cucurbita pepo (Zucchini)cpemedB536