MELO3C032748.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032748.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr07 : 17981505 .. 17982300 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAGTTTGTTGAGCATCAGATGCTCACAATCTTTAAAGAGTTCCGAGCTGACTGTCACAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGACACTTCCTTTGCGACCACTATATCAGCCGTGCATTCCAGGTATTTGTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAACAATATAATTGTTTTAATGCAGGAGTAATCACGGATGAACAATGCTGCTAGATAGAGGTAGCCTTACAATCATAGTAGCGGGTCCAAGTCATTTCTACAATGACAGTACGAGCTCGTTGAGAGAAAAGGGAAGCCGGTCGATCGTGTGGAGTTGTTCCGGGAAACATACGTTTGAGCTGGGACGTTTGTGTCGCAGGCTGCCGAGGATGTGCATATAAGTTATGCCCTTATTAATTATCCTCATTATATATTTTTGCGCGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGAGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAATGGCCTTGGTTGGGGACTAAAGCCGAAGGCCTACAGGACGACGAGTGCGAGCAATTCGTCGACATCTTGTTCACAGTCCACGCAAAAAGAAATTAATTACAATCTAAAATTAATGAAGCTTTGGAACGAATTAAAGTGCAAGATAAAAATCACCAAGCGTTAG

mRNA sequence

ATGAATAAGTTTGTTGAGCATCAGATGCTCACAATCTTTAAAGAGTTCCGAGCTGACTGTCACAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGAGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAATGGCCTTGGTTGGGGACTAAAGCCGAAGGCCTACAGGACGACGAGTGCGAGCAATTCGTCGACATCTTGTTCACAGTCCACGCAAAAAGAAATTAATTACAATCTAAAATTAATGAAGCTTTGGAACGAATTAAAGTGCAAGATAAAAATCACCAAGCGTTAG

Coding sequence (CDS)

ATGAATAAGTTTGTTGAGCATCAGATGCTCACAATCTTTAAAGAGTTCCGAGCTGACTGTCACAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGAGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGACGACCAGGCTACTCAAATGGCCTTGGTTGGGGACTAAAGCCGAAGGCCTACAGGACGACGAGTGCGAGCAATTCGTCGACATCTTGTTCACAGTCCACGCAAAAAGAAATTAATTACAATCTAAAATTAATGAAGCTTTGGAACGAATTAAAGTGCAAGATAAAAATCACCAAGCGTTAG

Protein sequence

MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNALNQMLELQSQPTLESSQPLSEDEICDQVLGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCSQSTQKEINYNLKLMKLWNELKCKIKITKR
Homology
[Close]
BLAST of MELO3C032748.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 59/150 (39.33%), Postives = 63/150 (42.00%), Query Frame = 0 

Query: 1   MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNAL------------------- 60
           MN+FVEHQM+T FKEF+ DCHRHFKKYSDPE+ARANPPNAL                   
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  ------------------------------------------------------------ 67
                                                                       
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFRETHVRAGTFMSQA 245

[Close]
BLAST of MELO3C032748.2 vs. NCBI nr
Match: XP_008447319.1 (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 9.8e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 46  ELQSQPTLESSQPLSEDEICDQVLGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCSQS 104
           ++ SQPTLE +QPLS DEI + +L RR G S GLGWG KPKA + TSAS+S TSC QS
Sbjct: 7   DVHSQPTLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTSASSSMTSCPQS 64

[Close]
BLAST of MELO3C032748.2 vs. NCBI nr
Match: CAN64494.1 (hypothetical protein VITISV_018031 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 49/141 (34.75%), Postives = 67/141 (47.52%), Query Frame = 0 

Query: 1    MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNALN------------------ 60
            + K +E +M   +++ R  CH+HFKKY     A+ NP   ++                  
Sbjct: 1115 VKKAIEGKMAARYRDHRNKCHKHFKKYPTIALAKQNPYKHVSDQKQWDWLCDRFASEKFQ 1174

Query: 61   -QMLELQSQPTLESSQPLSEDEICDQVLGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCS 120
             +MLELQ QP  E  Q L E EIC QVLG R GY  GLG G +P         +SS+  +
Sbjct: 1175 EKMLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRP--------PSSSSKST 1234

Query: 121  QSTQKEINYNLKLMKLWNELK 123
              + +EI       +L NELK
Sbjct: 1235 HKSHREI-------ELENELK 1240

[Close]
BLAST of MELO3C032748.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1   MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNAL 42
           MN  VE+QM   FKEF  DCH+ FKKYSDPE+ARANPPN L
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

[Close]
BLAST of MELO3C032748.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 1   MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNAL 42
           +N+FVEHQMLT FKEF  DCHRHFK      +ARANPPN L
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVL 169

[Close]
BLAST of MELO3C032748.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 59/150 (39.33%), Postives = 63/150 (42.00%), Query Frame = 0 

Query: 1   MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNAL------------------- 60
           MN+FVEHQM+T FKEF+ DCHRHFKKYSDPE+ARANPPNAL                   
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYIRRAF 185

Query: 61  ------------------------------------------------------------ 67
                                                                       
Sbjct: 186 QEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFRETHVRAGTFMSQA 245

[Close]
BLAST of MELO3C032748.2 vs. TrEMBL
Match: tr|A0A1S3BH46|A0A1S3BH46_CUCME (uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 46  ELQSQPTLESSQPLSEDEICDQVLGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCSQS 104
           ++ SQPTLE +QPLS DEI + +L RR G S GLGWG KPKA + TSAS+S TSC QS
Sbjct: 7   DVHSQPTLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTSASSSMTSCPQS 64

[Close]
BLAST of MELO3C032748.2 vs. TrEMBL
Match: tr|F6HAB8|F6HAB8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g00610 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 0 

Query: 9   MLTIFKEFRADCHRHFKKYSDPEKARANPPNALNQMLELQSQPTLESSQPLSEDEICDQV 68
           M   +++ R  CH+HFKKY     A+ NP     +MLELQ QP  E  Q L E EIC QV
Sbjct: 1   MAARYRDHRNKCHKHFKKYLTIALAKQNPYKH-EKMLELQKQPVPEGGQALKEAEICVQV 60

Query: 69  LGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCSQSTQKEINYNLKLMKLWNELK 123
           LG R GY  GLG G +P         +SS+  +  + +EI       +L NELK
Sbjct: 61  LGSRSGYIKGLGHGPRP--------PSSSSKSTHKSHREI-------ELENELK 98

[Close]
BLAST of MELO3C032748.2 vs. TrEMBL
Match: tr|A5AEV7|A5AEV7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 49/141 (34.75%), Postives = 67/141 (47.52%), Query Frame = 0 

Query: 1    MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNALN------------------ 60
            + K +E +M   +++ R  CH+HFKKY     A+ NP   ++                  
Sbjct: 1115 VKKAIEGKMAARYRDHRNKCHKHFKKYPTIALAKQNPYKHVSDQKQWDWLCDRFASEKFQ 1174

Query: 61   -QMLELQSQPTLESSQPLSEDEICDQVLGRRPGYSNGLGWGLKPKAYRTTSASNSSTSCS 120
             +MLELQ QP  E  Q L E EIC QVLG R GY  GLG G +P         +SS+  +
Sbjct: 1175 EKMLELQKQPVPEGGQALKEAEICVQVLGSRSGYIKGLGHGPRP--------PSSSSKST 1234

Query: 121  QSTQKEINYNLKLMKLWNELK 123
              + +EI       +L NELK
Sbjct: 1235 HKSHREI-------ELENELK 1240

[Close]
BLAST of MELO3C032748.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 1   MNKFVEHQMLTIFKEFRADCHRHFKKYSDPEKARANPPNAL 42
           MN  VE+QM   FKEF  DCH+ FKKYSDPE+ARANPPN L
Sbjct: 139 MNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLL 179

The following BLAST results are available for this feature:
BLAST of MELO3C032748.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34071.13.5e-1539.33CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_008447319.19.8e-1063.79PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo][more]
CAN64494.15.4e-0834.75hypothetical protein VITISV_018031 [Vitis vinifera][more]
XP_016901155.14.5e-0770.73PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_016901035.11.9e-0568.29PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
BLAST of MELO3C032748.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032748.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032748.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME2.3e-1539.33CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BH46|A0A1S3BH46_CUCME6.5e-1063.79uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=... [more]
tr|F6HAB8|F6HAB8_VITVI9.3e-0941.23Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0009g00610 PE=4 SV=... [more]
tr|A5AEV7|A5AEV7_VITVI3.5e-0834.75Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME3.0e-0770.73LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032748.2.1MELO3C032748.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032748.2Cucumber (Gy14) v2cgybmedB272
MELO3C032748.2Cucumber (Gy14) v1cgymedB648
MELO3C032748.2Cucurbita maxima (Rimu)cmamedB359
MELO3C032748.2Cucurbita maxima (Rimu)cmamedB795
MELO3C032748.2Cucurbita moschata (Rifu)cmomedB338
MELO3C032748.2Cucurbita moschata (Rifu)cmomedB790
MELO3C032748.2Cucurbita pepo (Zucchini)cpemedB241
MELO3C032748.2Cucurbita pepo (Zucchini)cpemedB501
MELO3C032748.2Wild cucumber (PI 183967)cpimedB307
MELO3C032748.2Cucumber (Chinese Long) v2cumedB303
MELO3C032748.2Bottle gourd (USVL1VR-Ls)lsimedB284
MELO3C032748.2Watermelon (Charleston Gray)medwcgB448
MELO3C032748.2Silver-seed gourdcarmedB0389
MELO3C032748.2Cucumber (Chinese Long) v3cucmedB313
MELO3C032748.2Watermelon (97103) v2medwmbB458
MELO3C032748.2Wax gourdmedwgoB570