MELO3C032717.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032717.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRetrotransposon gag protein
Locationchr07 : 14508548 .. 14511289 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATACTTTGGGTATGAAAAAATAATGCAAGATTAATTTGATTACCTTTGTCTACACAAAAACTTAATCTAATTCTTGATTGCAACATGTCAAATCTTGAAATTGATTAATGCTAGATGAATCTTCCTTGCTGTTGGCAATTTTTGAATTTGATTGCATCAATTTTATTGTGCACAATTAAATTCAATTAATTCATTGATTGTAAATTGTTTAAAAAAAAAGCGTGAAAGTTACTTTGATCTTCTTTAAACAGCAAAATTAGGCTTTAGTTGTTATTGCAAGAATATACACTAAATGCTTGAGCTGATTGTCTCTTTTCTTGAAATCTTGACCAAAGTTCTTACAAAATCAAGCAAGTTGATCTTGTAAGAATCTTGATTAAGAACCCCTTTTAACCGAGCAAAAATCATTTCATAATCCTATTAATTCAATGATAAGATCAATTGATTAGTGCCTTTTGCTCATTCCCTCATTTCTTTCATaAGATTTAATTTTCACAATTTTTTTTTTTTTTTTTTTGTGAATTGAGTTTACATCCTAAATCACTCTTAAGTCTTGGTTCTAGTACTTGATTTTCCCACACTCTTCAATGCAACTTTTGCTACTAACATCATTTCTTTGAAGCTTAGATTCAAGATACTTACTTAGCCACCATTATCTTGGATTCGACACTAGTACTTCCTACCAAACTACGGTAAAAAGTAAGGGTAAAATTCAAATTCTTTTTGTCGAGGCAAATCTAGGTAGGTGCAACCTACCTTTAGCAGTAAATTTCATTTCTAAACATATTTGTGCTTGATTGTAATGGTCTTGTCTATACATACTTTGATACGTATCATTTTTTGCCTTGTCAAAAAAAAAAAAAAAGAAAATGACACTGTTGCCGGAGAATGACACGACATAGTATCTTTCTTGAATCTCTGCTTGTATATCTTTTTTGTTAGTGATTTCTAGAAAGCATATTATATTTGTAGCTTTTACTTGATAAAAAAAAATTGCATGCTATTTTTTTTTCTTTGCTTTCTTTAGTGCATGATAGGTTAATTTGTTGAAGACATAACCTTGCATGAAAGAAGACTAAGGAAAGAAAAGCAAAAGTAAGTTAGCTCATCACAATTAGAATTAGAATTTCACATTCATATTTTTGAACCATCTTTAGAGAGACCTTTAGAGCCTACCCTAGAGAACCATTCAAACAATCCAATGGGAGAGGAGGCACCTGAGAAAACCCTTAGGGAACTCACCTCGATGTCCATCAAAGGCCAATGGTATAGTGATCCCACCTACCACAACTAACTTTCACCTAATTAGGTTGGATTTGATCTTAAATTTACCCATCTTTAGAGGACCCAATGGGGAGGAGCCACATAAGCATCTTAGAGACTTTTCTTAGGCATGTGATCTCTTTAGACCTTACGAGGTAACCGATCAAAAATTAAATCTTAGGGAATTTTCCTTTTTCCTTGCCCATAGTGCCAAAAGATGGCTTATAAACCTAGAGCCCCAAACTATAACTTCTTGGGAATAACTTAAGAAAAGGTTCTTAAATTTTTTTTCCAATTACTGGAGCTCAATTGGCTTTAAAAGAAATTTATGGTGCTAGGCAATCTCATAATGAAACATTATTTGAATATTGGGAGACGTATAAGGAACTTTGTGCTAGGTTGTCATATAATCAATCGACCGGAAGGGACATTGTGCAATATTTTTACTCAGGATTGTTGCCATCAGATATGAGACTCAATAGATGTCGCTTCGGGAGGGACTTTGATAGATAAAACCCCCTCTGAAGCAAGGAAGTTAGATTCTAGAATGGTCGAGAATTCTCAAAATTTTTCTATTAGAACACTTGATTCTAATTCTTCTTTATCTTGTGCTAATTCTACCAAAGAACAAGTGAATTTACTAACTAAAATTTTTACTTTTTTTTTTGTCAAGGGGGAGGTTCCTATATAAAGTCGCCTCTTGCGGAGATTGTGGCTTGCTAGGCCATCACAATGATCAATGCCCGAAGCTTAAAGAGGTAAGTGCCATGGGAGGTTTCAGAAGAAATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAAGAATCAAAACCTACCAACACTTCTTCTTCCTCCTAATCATCACAAGGTACGTACTTAGAGGAAATAATCTCCAGGTTAGCTCTTAGCTCAAACAATTTTAAAACTGATTTGAGAAAAACTTAGTTAAGTTGAGTGAGCAAAACTGTTAATTCAATTGAAGCCATGAAAAAGGATATAGAAACCATGAAAGCATCCATTTCTGAGTTAGGAGATAAACTTAATCAATTAGCACATGTGTTCTTAAAATGGAAGGGAAAGACAAACTTCTCGCTCAACCCAACCATGAAAATGTGAGTGATATTACTTTAAGAAGTGGCAAAAATACTACTAGAAATTTGGGATTTAAAGATGCAAAATTTGCATCATAAAGAGTTTGAATGACACAATTTTTGCGTCATTAAAGCCCCTGTCAAGAAAGATATTTAACGATACTTTGAAAAAAGCGTCGTTAAATATGCTTAGATGACACCAAGATTGCATAATTAATATCCTTACATTAACGCAATAAATATGTCACCGTTTATCTATAACTCGACACCAATATATTGTCATCAATACCCTTACACTGACGCTTTAAATGTGTCACCATTATCTATAACTTGACCCAATATATTGCCA

mRNA sequence

ATGAAAGATACTTTGGAGAGACCTTTAGAGCCTACCCTAGAGAACCATTCAAACAATCCAATGGGAGAGGAGGCACCTGAGAAAACCCTTAGGGAACTCACCTCGATGGGGAGGTTCCTATATAAAGTCGCCTCTTGCGGAGATTGTGGCTTGCTAGGCCATCACAATGATCAATGCCCGAAGCTTAAAGAGGTAAGTGCCATGGGAGGTTTCAGAAGAAATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAAGAATCAAAACCTACCAACACTTCTTCTTCCTCCTAATCATCACAAGGTACGTACTTAGAGGAAATAATCTCCAGGTTAGCTCTTAGCTCAAACAATTTTAAAACTGATTTGAGAAAAACTTAGTTAAGTTGAGTGAGCAAAACTGTTAATTCAATTGAAGCCATGAAAAAGGATATAGAAACCATGAAAGCATCCATTTCTGAGTTAGGAGATAAACTTAATCAATTAGCACATGTGTTCTTAAAATGGAAGGGAAAGACAAACTTCTCGCTCAACCCAACCATGAAAATGTGAGTGATATTACTTTAAGAAGTGGCAAAAATACTACTAGAAATTTGGGATTTAAAGATGCAAAATTTGCATCATAAAGAGTTTGAATGACACAATTTTTGCGTCATTAAAGCCCCTGTCAAGAAAGATATTTAACGATACTTTGAAAAAAGCGTCGTTAAATATGCTTAGATGACACCAAGATTGCATAATTAATATCCTTACATTAACGCAATAAATATGTCACCGTTTATCTATAACTCGACACCAATATATTGTCATCAATACCCTTACACTGACGCTTTAAATGTGTCACCATTATCTATAACTTGACCCAATATATTGCCA

Coding sequence (CDS)

ATGAAAGATACTTTGGAGAGACCTTTAGAGCCTACCCTAGAGAACCATTCAAACAATCCAATGGGAGAGGAGGCACCTGAGAAAACCCTTAGGGAACTCACCTCGATGGGGAGGTTCCTATATAAAGTCGCCTCTTGCGGAGATTGTGGCTTGCTAGGCCATCACAATGATCAATGCCCGAAGCTTAAAGAGGTAAGTGCCATGGGAGGTTTCAGAAGAAATGATTCACAGAGTAACACCTATAACTCTGGTTGGAGGGACCATCCAAATCTCAAGTGGGGACCTTAA

Protein sequence

MKDTLERPLEPTLENHSNNPMGEEAPEKTLRELTSMGRFLYKVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWGP
Homology
[Close]
BLAST of MELO3C032717.2 vs. NCBI nr
Match: KGN47319.1 (hypothetical protein Csa_6G295940 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 42 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWGP 96
          KV SCG CGLLGHHNDQCP++KEVSA+GG+RRNDSQSN YNSGWRD P+L+WGP
Sbjct: 32 KVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGP 85

[Close]
BLAST of MELO3C032717.2 vs. NCBI nr
Match: XP_008460738.1 (PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 33  LTSMGRFLYKVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLK 92
           LTS      KV  CG CGL+GH ND+CP+L  +  +   RR D   NTYNSGWRD+PNL+
Sbjct: 236 LTSFVHTPLKVTKCGVCGLVGHLNDKCPEL--IEDVNIVRRYDPHGNTYNSGWRDNPNLR 295

Query: 93  WG 95
           WG
Sbjct: 296 WG 295

[Close]
BLAST of MELO3C032717.2 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 42  KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
           KV  CG CGL+GH ND+CP++  +  +   RR D   NTYNSGWRD+PNL+WG
Sbjct: 72  KVTKCGVCGLVGHQNDKCPEV--IEDVNIVRRYDPHGNTYNSGWRDNPNLRWG 122

[Close]
BLAST of MELO3C032717.2 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 42 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
          KV  CG CGL+GH ND+CP++  +  +   ++ D   NTYNSGWRD+PNL+WG
Sbjct: 15 KVTKCGVCGLVGHPNDKCPEV--IEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 65

[Close]
BLAST of MELO3C032717.2 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 42  KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
           KV  CG CGL+G+ ND+CPK+  +  +   RR D   NTYN GWRD+PNL+WG
Sbjct: 70  KVTKCGVCGLVGYPNDKCPKV--IEDVNIVRRYDPHGNTYNLGWRDNPNLRWG 120

[Close]
BLAST of MELO3C032717.2 vs. TrEMBL
Match: tr|A0A0A0KEQ8|A0A0A0KEQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 42 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWGP 96
          KV SCG CGLLGHHNDQCP++KEVSA+GG+RRNDSQSN YNSGWRD P+L+WGP
Sbjct: 32 KVVSCGVCGLLGHHNDQCPEIKEVSALGGYRRNDSQSNAYNSGWRDDPSLRWGP 85

[Close]
BLAST of MELO3C032717.2 vs. TrEMBL
Match: tr|A0A1S3CD34|A0A1S3CD34_CUCME (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 33  LTSMGRFLYKVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLK 92
           LTS      KV  CG CGL+GH ND+CP+L  +  +   RR D   NTYNSGWRD+PNL+
Sbjct: 236 LTSFVHTPLKVTKCGVCGLVGHLNDKCPEL--IEDVNIVRRYDPHGNTYNSGWRDNPNLR 295

Query: 93  WG 95
           WG
Sbjct: 296 WG 295

[Close]
BLAST of MELO3C032717.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 42  KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
           KV  CG CGL+GH ND+CP++  +  +   RR D   NTYNSGWRD+PNL+WG
Sbjct: 72  KVTKCGVCGLVGHQNDKCPEV--IEDVNIVRRYDPHGNTYNSGWRDNPNLRWG 122

[Close]
BLAST of MELO3C032717.2 vs. TrEMBL
Match: tr|A0A1S4E3R2|A0A1S4E3R2_CUCME (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.8e-09
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 42 KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
          KV  CG CGL+GH ND+CP++  +  +   ++ D   NTYNSGWRD+PNL+WG
Sbjct: 15 KVTKCGVCGLVGHPNDKCPEV--IEDVNIVQKYDPHGNTYNSGWRDNPNLRWG 65

[Close]
BLAST of MELO3C032717.2 vs. TrEMBL
Match: tr|A0A1S3CQU8|A0A1S3CQU8_CUCME (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.9e-09
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 42  KVASCGDCGLLGHHNDQCPKLKEVSAMGGFRRNDSQSNTYNSGWRDHPNLKWG 95
           KV  CG CGL+G+ ND+CPK+  +  +   RR D   NTYN GWRD+PNL+WG
Sbjct: 70  KVTKCGVCGLVGYPNDKCPKV--IEDVNIVRRYDPHGNTYNLGWRDNPNLRWG 120

The following BLAST results are available for this feature:
BLAST of MELO3C032717.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47319.12.0e-2081.48hypothetical protein Csa_6G295940 [Cucumis sativus][more]
XP_008460738.12.5e-1054.84PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo][more]
XP_008465471.19.3e-1056.60PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo][more]
XP_016902871.11.0e-0852.83PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo][more]
XP_008465649.11.3e-0854.72PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo][more]
BLAST of MELO3C032717.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032717.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032717.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KEQ8|A0A0A0KEQ8_CUCSA1.3e-2081.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G295940 PE=4 SV=1[more]
tr|A0A1S3CD34|A0A1S3CD34_CUCME1.6e-1054.84uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=... [more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME6.2e-1056.60uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
tr|A0A1S4E3R2|A0A1S4E3R2_CUCME6.8e-0952.83uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... [more]
tr|A0A1S3CQU8|A0A1S3CQU8_CUCME8.9e-0954.72uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032717.2.1MELO3C032717.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..95

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032717.2Cucumber (Gy14) v2cgybmedB257
MELO3C032717.2Cucumber (Gy14) v1cgymedB453
MELO3C032717.2Cucurbita maxima (Rimu)cmamedB352
MELO3C032717.2Cucurbita maxima (Rimu)cmamedB788
MELO3C032717.2Cucurbita moschata (Rifu)cmomedB340
MELO3C032717.2Cucurbita moschata (Rifu)cmomedB784
MELO3C032717.2Cucurbita pepo (Zucchini)cpemedB493
MELO3C032717.2Wild cucumber (PI 183967)cpimedB292
MELO3C032717.2Cucumber (Chinese Long) v2cumedB288
MELO3C032717.2Bottle gourd (USVL1VR-Ls)lsimedB286
MELO3C032717.2Watermelon (Charleston Gray)medwcgB449
MELO3C032717.2Watermelon (97103) v1medwmB481
MELO3C032717.2Silver-seed gourdcarmedB0931
MELO3C032717.2Silver-seed gourdcarmedB1005
MELO3C032717.2Cucumber (Chinese Long) v3cucmedB296
MELO3C032717.2Watermelon (97103) v2medwmbB459
MELO3C032717.2Wax gourdmedwgoB571