MELO3C032690.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032690.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP-3 complex subunit sigma-like
Locationchr07 : 12355683 .. 12358540 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGTCTTTATGTTTCATGCCCACCAACTGTTTGTTGTTTGTTCTGCTTTTGGGTTCTCTTGTGTTTTACTGTGTAATTGGATTCGCTCTGTTGTTGGATTGATTTGGGAATGTGGGTTTTGCAATGTGGTGATTTTTGTGTAAGGGGCGGGTTAATATGTTTCTATTTGATCTTTTTTGTTGACGTCATGAGGATATGTATATGTAGTATCCTCATCATACTAACCGAACCAAGATTTATCAAGTGGGCATACCTTATCAATGTTTCGTTTAATGTGTGCATTAACAACTTTGACTAAATTGAAGTGTAATGTACATGAAACTTCTTAAATTTGAACTTAATGACACTAATACTTTTCCTTCAAAATATAACATGTATACTGGAACGTCTGGGCACATGTATATTTTGGTTCCTCATGTTGGTGTTGTGAACTCTGAAACTTTTTATTTATTACTTTTTCCAGATTGAAGTTCTTAATCAGTGAGCATTTGGGTTTGCACATAGGTTGTAAAATGCCTTATAAATTTGATTCACAAGCACGGTGGTTAGATTGACAATGATGGATCCATCTTCTTGCCTTGTGATACAATCTTGAATGTGCTTCTGAAGGTACTCATCTAGTAAACTACTGTAGTATGAAATTCTGTTTATATTGTCTCTTTAAGTTATTGATTGGTTACCATTTGATTTTCCATTTTTGGTAAATTTGGTATCCACAATGTAACAAGTTTTTTGTTTATGCTTGCAAGATGTTTGATCAAATGTCTCCAAAATCAAATGTTAATTCATAAGGTGTTTTTGTTCTAATTTTTTGTGTTCTTTGAATGGGGCTGAACTTCTCCTAGTGCAAATGACCAATGTGAGTGATTTTTCAGCAGAATTAAACTTGTGCCATTGGTTTAGCTAAATTTTGGTCTCCACAATGTAACAAGTTTTTTATGGAGTAAATTATTGCTAATTCATTGGTATTATGCATAAATTATTGCTAATTTATTTGGTTTGAACTTTGATGTTTCTTTCCTTCCAAGTAATGGGAATAAAAAGGGACAGCTTCAGAATGATTCTAACTGGGTAGATGGTGACAGCTTCAGTGTCTAATGTTCCCTTCCTTTCACTTGAGATAGAAATCAATTAGCATATTGAAGATCAGAGCAAAAAGGAGGAAAATGTGGTTATGTTATAAATCTCAAATTTTGGCAGTTTTTGAAAACATTGGTTGAAACTAGATCATAAACCAAAAAATTTAAAGGTGTAGTGAGTGTTCATAGGCCTAATTTTCAAAGGTAACTAAGTGAGGGCTCAGGAAATGTTCCTTTATGGTTTTTTCAACAGGGAGTCTAAAAAAACGAATCCTTAATCGGCTTGTGTTTTATACCTTGAAAGACCAGGGATGGGAGGCACATATTCTCCTTTGGGAATCATACAACTGAGATTTAGACAATTCTAATTCTGAAAGTAGTATCTCTCTGTATATGAGGTATAAAATAAAAATTCCAATGGCTTTTGCGTGCATGTTCATTATGTTTTCAGGGCTTCTCTTGTTCGTATGCCCTCTACATATATCTGAATGACCAAGTCTTTTCTAGAGTTCTAATTGCATCTGATCTTTTCTCCTATTATCAATAATGACTCTGGGTGCTTGTAATATGAAATCTGTTGGTGCATATCAGATATTTTCCTCAGGATGTTGTTTGCACGCAGTTTTGCTAACTACCTATTTGTTGGTCAGTATTTTCTTCTTTTATATTTATTTTTGTGTACCATGTTTGTAGTTTTATTATTTGAGGCAGTAGTAAAGGGAAGTAATAATGCTCAGATACATCTTTGGAAGTAATATTGCTTATTCATCTTGGAAGTGGTAAAGGGAATAAATATTTGATTTTACTGAATTGTTTCTTCTGTAGGGTTTTGCGCCATTGTTGGGTAAGTTTGATTTTACTGAATTGTTTCTTCTCTTTGAATCCTCTGTTATTTGTTCTTCTGCGCCATTGTTGGGTAAGTTTCAACCTTCAATTCTTAATTATATGTTTTGTATTTTCAGTTCCTTTGATGTTTATGCTCTGTTGCTTGGGATGTTTCTTTAGCTTGTTTTACTTTTGATGTTTAATTTGGGCCTTAATAAATTAGTACGAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTGTCTAATGCAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGGTAATTTAGATTTTATTTGTCTTTGTCTTGGATTAAGTACTATTTTTATGGTCAGTTTCTGACAGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAATGATCAGCTATGTTGATGATTCTGGTGGCCAGGAAGAAACTCTAGGCATTAAATTCATTATGGTTGTTGGAGAATAGAAACTGTGATTTTATTTGTGTAGTATGATTAGCTTATTTTTAATAGTTGTTAGTTGATTTCTCTGACTAAATAAGTTTTGAACATACTTTGTTGTTGTAATGTTATCTTCTTCTTGTAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGAATTGAAGATAGAGGATGCAAATGCAAGTTTATTTGAAGCCAAGTTTTATCCAAAGTTATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTCTGATTTTTGGAACAACATAGTTTGGTTAGTTTTGTAATTTTGGAATTATCATATTAAGTTGGGTAGATAGAA

mRNA sequence

ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGAATTGAAGATAGAGGATGCAAATGCAAGTTTATTTGAAGCCAAGTTTTATCCAAAGTTATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTCTGATTTTTGGAACAACATAGTTTGGTTAGTTTTGTAATTTTGGAATTATCATATTAAGTTGGGTAGATAGAA

Coding sequence (CDS)

ATGTCGAGGAAGGCTGATATGAAGAAAGAAGTAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATAGAAAAGAGGTTGAGAGTTGCTTGCCTTATGCAAATATCAATAATGTTGTGAAGATTGGTTCTTCTGTTGGTGGTACTTATTTTAGCTCATGA

Protein sequence

MSRKADMKKEVGLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS
Homology
[Close]
BLAST of MELO3C032690.2 vs. NCBI nr
Match: XP_008465395.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 62  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C032690.2 vs. NCBI nr
Match: XP_008465396.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 12 GLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS 63
          GLQKKCIYKSRFAMHECYTKH KE               IGS+VGG YFSS
Sbjct: 62 GLQKKCIYKSRFAMHECYTKHGKE---------------IGSAVGGNYFSS 97

[Close]
BLAST of MELO3C032690.2 vs. TrEMBL
Match: tr|A0A1S3CQA2|A0A1S3CQA2_CUCME (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-18
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 12  GLQKKCIYKSRFAMHECYTKHRKEVESCLP-YANINNVVKIGSSVGGTYFSS 63
           GLQKKCIYKSRFAMHECYTKH KEVESCLP YANINNVVKIGS+VGG YFSS
Sbjct: 62  GLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGNYFSS 113

[Close]
BLAST of MELO3C032690.2 vs. TrEMBL
Match: tr|A0A1S3CNT1|A0A1S3CNT1_CUCME (uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 33/51 (64.71%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 12 GLQKKCIYKSRFAMHECYTKHRKEVESCLPYANINNVVKIGSSVGGTYFSS 63
          GLQKKCIYKSRFAMHECYTKH KE               IGS+VGG YFSS
Sbjct: 62 GLQKKCIYKSRFAMHECYTKHGKE---------------IGSAVGGNYFSS 97

The following BLAST results are available for this feature:
BLAST of MELO3C032690.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465395.16.1e-1892.31PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo][more]
XP_008465396.14.8e-0764.71PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo][more]
BLAST of MELO3C032690.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032690.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032690.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CQA2|A0A1S3CQA2_CUCME4.0e-1892.31uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CNT1|A0A1S3CNT1_CUCME3.2e-0764.71uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032690.2.1MELO3C032690.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032690.2Wax gourdmedwgoB586
MELO3C032690.2Wax gourdmedwgoB598
MELO3C032690.2Cucumber (Gy14) v2cgybmedB067
MELO3C032690.2Cucumber (Gy14) v2cgybmedB269
MELO3C032690.2Cucumber (Gy14) v1cgymedB162
MELO3C032690.2Cucumber (Gy14) v1cgymedB302
MELO3C032690.2Cucurbita maxima (Rimu)cmamedB232
MELO3C032690.2Cucurbita maxima (Rimu)cmamedB280
MELO3C032690.2Cucurbita maxima (Rimu)cmamedB502
MELO3C032690.2Cucurbita moschata (Rifu)cmomedB216
MELO3C032690.2Cucurbita moschata (Rifu)cmomedB266
MELO3C032690.2Cucurbita moschata (Rifu)cmomedB490
MELO3C032690.2Cucurbita pepo (Zucchini)cpemedB570
MELO3C032690.2Cucurbita pepo (Zucchini)cpemedB641
MELO3C032690.2Cucurbita pepo (Zucchini)cpemedB700
MELO3C032690.2Wild cucumber (PI 183967)cpimedB071
MELO3C032690.2Wild cucumber (PI 183967)cpimedB304
MELO3C032690.2Cucumber (Chinese Long) v2cumedB073
MELO3C032690.2Cucumber (Chinese Long) v2cumedB300
MELO3C032690.2Melon (DHL92) v3.6.1medmedB073
MELO3C032690.2Bottle gourd (USVL1VR-Ls)lsimedB236
MELO3C032690.2Bottle gourd (USVL1VR-Ls)lsimedB466
MELO3C032690.2Watermelon (Charleston Gray)medwcgB483
MELO3C032690.2Watermelon (Charleston Gray)medwcgB468
MELO3C032690.2Watermelon (97103) v1medwmB502
MELO3C032690.2Watermelon (97103) v1medwmB521
MELO3C032690.2Silver-seed gourdcarmedB0712
MELO3C032690.2Cucumber (Chinese Long) v3cucmedB080
MELO3C032690.2Cucumber (Chinese Long) v3cucmedB310
MELO3C032690.2Watermelon (97103) v2medwmbB472
MELO3C032690.2Watermelon (97103) v2medwmbB486