MELO3C032686.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032686.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr07 : 12076742 .. 12077298 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTCCTATCGAAATTCCCCGACAATGATCTACTTGTTGTCGTTGACACTATATCTGTTACTGATATTGGAAATACCCCGTATTTGAGAGAGGATGTGAAATTGATTTGAATTCCATTAGGGGTACTCTGGAGGACTCGTGTGCCATGCTGTCTCCATTTTCGGATGCATTGATCCGAAACAACCCAGGTATAAAAATTACAAATACTCTGTATTTTAACAAACATCACACGATCAATCTAGAAATACACTGTAATTCTAAATTTTTTTATTTGACTGTTTTTAGGTACATATACGACTGAAGAAGCAGATGATGAAGGTCGATTTAATACAAACGAACAAAGGCCGGTGGAAAGCTATCTTAAAAAAAATGGTGGAAACCGATCTTAAGTGGAGAGCGATCTTAAAAGAGTCGGTGGAAAGCAATCCTAAAAGTCACCGCAACATGAGAGAATAGAGATGACCACACGTATCTTAAGTGACGGTGGAAAGCGTTTCAAAAAGGAAGGGAGAAAGTGATCTTATTTTTCGAAGGAAAAAAGAAGATTTAAAAA

mRNA sequence

ATGTTAGTCCTATCGAAATTCCCCGACAATGATCTACTTGTTGTCGTTGACACTATATCTGTTACTGATATTGGAAATACCCCGGGTACTCTGGAGGACTCGTGTGCCATGCTGTCTCCATTTTCGGATGCATTGATCCGAAACAACCCAGGTACATATACGACTGAAGAAGCAGATGATGAAGGTCGATTTAATACAAACGAACAAAGGCCGGTGGAAAGCTATCTTAAAAAAAATGGTGGAAACCGATCTTAAGTGGAGAGCGATCTTAAAAGAGTCGGTGGAAAGCAATCCTAAAAGTCACCGCAACATGAGAGAATAGAGATGACCACACGTATCTTAAGTGACGGTGGAAAGCGTTTCAAAAAGGAAGGGAGAAAGTGATCTTATTTTTCGAAGGAAAAAAGAAGATTTAAAAA

Coding sequence (CDS)

ATGTTAGTCCTATCGAAATTCCCCGACAATGATCTACTTGTTGTCGTTGACACTATATCTGTTACTGATATTGGAAATACCCCGGGTACTCTGGAGGACTCGTGTGCCATGCTGTCTCCATTTTCGGATGCATTGATCCGAAACAACCCAGGTACATATACGACTGAAGAAGCAGATGATGAAGGTCGATTTAATACAAACGAACAAAGGCCGGTGGAAAGCTATCTTAAAAAAAATGGTGGAAACCGATCTTAA

Protein sequence

MLVLSKFPDNDLLVVVDTISVTDIGNTPGTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRFNTNEQRPVESYLKKNGGNRS

Homology

[Close]

BLAST of MELO3C032686.2 vs. NCBI nr
Match: XP_008455803.1 (PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 29  GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
           GT EDS AMLS FSDALIRNNPGTYT EEADDEGRF
Sbjct: 276 GTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRF 311

HSP 2 Score: 47.4 bits (111), Expect = 2.8e-02
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 1   MLVLSKFPDNDLLVVVDTISVTDIGNTP 29
           MLVLSK PDNDLLVV+DT   TDIGNTP
Sbjct: 76  MLVLSKLPDNDLLVVLDTAPATDIGNTP 103

[Close]

BLAST of MELO3C032686.2 vs. NCBI nr
Match: XP_016902696.1 (PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 7.7e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 29 GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
          GT EDS AMLS FSDALIRNNPGTYT EEADDEGRF
Sbjct: 42 GTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRF 77

[Close]

BLAST of MELO3C032686.2 vs. NCBI nr
Match: XP_016901440.1 (PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 29  GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
           GT +DS  MLS FSDALIRNNPGTYT +EADDEGRF
Sbjct: 201 GTPKDSYVMLSTFSDALIRNNPGTYTAKEADDEGRF 236

HSP 2 Score: 47.8 bits (112), Expect = 2.2e-02
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  MLVLSKFPDNDLLVVVDTISVTDIGNT 28
          MLVLSKFPDNDLL+VVDT   TDIGNT
Sbjct: 1  MLVLSKFPDNDLLIVVDTAPATDIGNT 27

[Close]

BLAST of MELO3C032686.2 vs. NCBI nr
Match: XP_011659751.1 (PREDICTED: uncharacterized protein LOC101219435 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-05
Identity = 42/122 (34.43%), Postives = 50/122 (40.98%), Query Frame = 0


Query: 1   MLVLSKFPDNDLLVVVDTISVTDIGNTP-------------------------------- 60
           ML++SKF DND +VVVD+     +GNT                                 
Sbjct: 50  MLIISKFLDNDFVVVVDSAPARLVGNTSCLNNEVNTQQLTHNVAGIIDVHSFDSPNDAVP 109

Query: 61  --------------------------GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEG 65
                                     GT EDS AML+ F+DALIRNN GTYT EE DD+G
Sbjct: 110 IKINHEVNVSYDKAWRGREIALSSIRGTPEDSYAMLAAFTDALIRNNQGTYTAEELDDKG 169

[Close]

BLAST of MELO3C032686.2 vs. TrEMBL
Match: tr|A0A1S3C300|A0A1S3C300_CUCME (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 29  GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
           GT EDS AMLS FSDALIRNNPGTYT EEADDEGRF
Sbjct: 276 GTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRF 311

HSP 2 Score: 47.4 bits (111), Expect = 1.9e-02
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 1   MLVLSKFPDNDLLVVVDTISVTDIGNTP 29
           MLVLSK PDNDLLVV+DT   TDIGNTP
Sbjct: 76  MLVLSKLPDNDLLVVLDTAPATDIGNTP 103

[Close]

BLAST of MELO3C032686.2 vs. TrEMBL
Match: tr|A0A1S4E392|A0A1S4E392_CUCME (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-08
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 29 GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
          GT EDS AMLS FSDALIRNNPGTYT EEADDEGRF
Sbjct: 42 GTPEDSYAMLSAFSDALIRNNPGTYTAEEADDEGRF 77

[Close]

BLAST of MELO3C032686.2 vs. TrEMBL
Match: tr|A0A1S4E0D5|A0A1S4E0D5_CUCME (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 29  GTLEDSCAMLSPFSDALIRNNPGTYTTEEADDEGRF 65
           GT +DS  MLS FSDALIRNNPGTYT +EADDEGRF
Sbjct: 201 GTPKDSYVMLSTFSDALIRNNPGTYTAKEADDEGRF 236

HSP 2 Score: 47.8 bits (112), Expect = 1.4e-02
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  MLVLSKFPDNDLLVVVDTISVTDIGNT 28
          MLVLSKFPDNDLL+VVDT   TDIGNT
Sbjct: 1  MLVLSKFPDNDLLIVVDTAPATDIGNT 27

The following BLAST results are available for this feature:

BLAST of MELO3C032686.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455803.1	7.7e-08	88.89	PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo]	[more]
XP_016902696.1	7.7e-08	88.89	PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]	[more]
XP_016901440.1	1.9e-06	80.56	PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]	[more]
XP_011659751.1	2.1e-05	34.43	PREDICTED: uncharacterized protein LOC101219435 [Cucumis sativus]	[more]

BLAST of MELO3C032686.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032686.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032686.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C300\|A0A1S3C300_CUCME	5.1e-08	88.89	uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=...	[more]
tr\|A0A1S4E392\|A0A1S4E392_CUCME	5.1e-08	88.89	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
tr\|A0A1S4E0D5\|A0A1S4E0D5_CUCME	1.3e-06	80.56	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032686.2.1	MELO3C032686.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..84

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032686.2	Cucumber (Gy14) v2	cgybmedB067
MELO3C032686.2	Cucumber (Gy14) v2	cgybmedB269
MELO3C032686.2	Cucumber (Gy14) v1	cgymedB162
MELO3C032686.2	Cucumber (Gy14) v1	cgymedB302
MELO3C032686.2	Cucurbita maxima (Rimu)	cmamedB232
MELO3C032686.2	Cucurbita maxima (Rimu)	cmamedB280
MELO3C032686.2	Cucurbita maxima (Rimu)	cmamedB502
MELO3C032686.2	Cucurbita moschata (Rifu)	cmomedB216
MELO3C032686.2	Cucurbita moschata (Rifu)	cmomedB266
MELO3C032686.2	Cucurbita moschata (Rifu)	cmomedB490
MELO3C032686.2	Cucurbita pepo (Zucchini)	cpemedB570
MELO3C032686.2	Cucurbita pepo (Zucchini)	cpemedB641
MELO3C032686.2	Cucurbita pepo (Zucchini)	cpemedB700
MELO3C032686.2	Wild cucumber (PI 183967)	cpimedB071
MELO3C032686.2	Wild cucumber (PI 183967)	cpimedB304
MELO3C032686.2	Cucumber (Chinese Long) v2	cumedB073
MELO3C032686.2	Cucumber (Chinese Long) v2	cumedB300
MELO3C032686.2	Melon (DHL92) v3.6.1	medmedB073
MELO3C032686.2	Bottle gourd (USVL1VR-Ls)	lsimedB236
MELO3C032686.2	Bottle gourd (USVL1VR-Ls)	lsimedB466
MELO3C032686.2	Watermelon (Charleston Gray)	medwcgB483
MELO3C032686.2	Watermelon (Charleston Gray)	medwcgB468
MELO3C032686.2	Watermelon (97103) v1	medwmB502
MELO3C032686.2	Watermelon (97103) v1	medwmB521
MELO3C032686.2	Silver-seed gourd	carmedB0712
MELO3C032686.2	Cucumber (Chinese Long) v3	cucmedB080
MELO3C032686.2	Cucumber (Chinese Long) v3	cucmedB310
MELO3C032686.2	Watermelon (97103) v2	medwmbB472
MELO3C032686.2	Watermelon (97103) v2	medwmbB486
MELO3C032686.2	Wax gourd	medwgoB586
MELO3C032686.2	Wax gourd	medwgoB598