MELO3C032673.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032673.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCoiled-coil domain-containing protein SCD2
Locationchr07 : 11330984 .. 11334150 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAACCCACGATTTTTCTATCTTTCTCAAATTTCTTTCATTCTCTTCTCAATTCTAAAATTTTCAAATCTCAAAATTTCCTTCTTTCTCTTCTAAAATGTCAAATTTCTTTCACTCTTCTATCTTTTTATTTTCAAATTTATTAAAATAAATTTATTAAAATTTATTTCACTCTTTTTATCTCCCTCTTTCTCTCCACGAAAACCCTTCAATTTGCGTATCCCCACCCTTCATCCGCGTCTGGCTTTTCGTCGACTTCTGCAGTCTCCCATCCGCATTTAGGACGGTGATAGCGACCCACAACGATTTGGTTATGTAAATCAAAATATCAAATTTTCCAAACCATTTCTTCTTTGAAACTTCCACATCTTCTTACCAGGTACAGTCTTCATCTTCCTTCAATTCTTTTATTTCTTGGTTTGAATTTTTCTAGGGCTTCAACTTCAAAATTTCGCGTTTGCAAATTGAAAGGGGTTATTTTGAAGATGGAAGGGGAAAGGGTAATTGAGATGTTTTTTTTCCTCATATTCCATGTTAAACCCACTTTCTAATTTCTTATTTTGATAGAAACTCAGTTATTCAATTTtTCTAAAAAAGTTTTCATGGAATTTGCAGGAAAAAATAAGAACAATGACACCGGAGATGTGGTCGACAATCCTTACCACCCATGGTACTATCTATTTCTGTAGCATTCTGATGAAAAAGAAAAAGGGAAGAGTTTTAAAGGTGATTTTTGGTGTTTGATTTTAGAAGGAAGATATTAAACTGATGGGTTCTATGGAGATGAATGCTTAACGGTTGTCCATTTCTTGGACCCGAATTTTGTCCAGTAAATTCTCCCTCTTTACATTTTCTTTTTCTTCCTTAAAACTCAATTATATATATATATATAATTTAGAAGGTGTTTTATTCAAACAGAAAAACTAATCAATAAATGTTTTTGGAAGTCATATCCCCATCACCACTCTAATCCTTCTGTAGACTTTATAGGGACTGAGAATATTAGAAAAGAATTGAAGTGTTTAGGCACACCAACATTTCTAAATGTTGACTTCCTCCTTTCATTATGTTTTAGTATGTTACTTAAGGTTTGTTTATAAAATCATCTTCTCTCCATTTTTTTCATTAATTTGATTCATCGTTAGTAGTATAACAATTAGTTTTACTTAATTTTGTTATCATCTTCTTGTTAATGTAAAGAGTGATATATAATGAAGATTTGAAGGTTGCACAAATATGAGAAAAATGTCACTGCTCATTAAATTTCTCGACATTGTATTTTTGCTTGTCTGATTCTTACTAGGTTTTTTTATTTATTTGTTTGAAAATTTTGATGAGTTATGAGATTAGTTTGTTCTTGATTGTTCTATGATTATGGTTTTGATCTGAACTATCTTTTTCTTTGTCATTGGTTCTTTGTGTTGCTTTTGATTCTATATGTTCTTAATTTTAATGTTTTGTGTTGTCAGTGATGGAGATTAGAGATGGTTGTGTTATGCAGAAGACAATTGAAGAATTTCTGATGTGGATTATGTGAGATTGTTTTGAGTTTCATTTTGCATTTGTTGTAATGAAAAGAAAAATTACTCTATTGTCCATGCTTTTAATGTAATAAAACAAATATGGATCATGTTCTATTTTATGGTTTTATGAATTGTGAATCAAAAGATTTGAGGAAAATATGGTTTCCTCTTGTTCATCGGTCAACCCATCCCCGCCGTCAATAATCGTTCCTTCTTCTTCCGCCATTAGGAATCTTTGCCCCGAGTCCTCATTTCCTTTTGTTACTTATCTTCTTTTTCTCCATCAATCTTTGAATTTTTGTAATGGGTTCTTGCATAAACTATTGTTTTGTGTTGTTTTGTTTTGCTTCTCATTAAATTTCTTGACATTGTATGTTTTCTTTGTCTGATTCTTACTGGGTTTTCTTTTATTTAATTTTTTGAAAAATTTGATGAGATATGAGATTAGTTTGTTCTTGATTGTTCTATGATTATGATTTTGATCTTAACTATCTTTTTCTTTCTCTTTAGTTTTTTAGATTGCTTTTGGTTCTATATGTTCTTAATTTAATGTTTTGTGTCTTTGTCGGTGGTGGAGATTAGAGATGTTTGTGTTATATGAAGAAGATAATGTAATAAAAAAAATATGGATCATGTTCTATTTTATGGTTTTATGAATTGTGAATCAAAAGATTTGAGGAAAATATGAAATGTCTAACAAATGATGAATGGATGTATAGAGTTTTTCAAATTGTGAAATTTCTTTTTGACTGTTGATCTGAAGGAGACTGAATTTGACCTTTAATTTACAGGTGATATTTAGAAATTTTTATCAGAATATTGAGAATCTCAAGCCTGGTGACTCCTCAGCTTTCATTGGCAAGATTCATTTTCACTTACTTAAATCTTCCTATTTAATCACACCGATGAATCATTCGACTGGTTTTATAGTTAGAAGATTGTTGGCTCCTAGGTAAGTTTGGTATGGAGTTTATTGAAGGTTTGTCAATTTGTTTTGAACTTAAATTGGTTGGTTTTTTTTTAAGTTTGTGGATGTGTTTTTCAGAGGTTGTAGTGATTGGTAGCAGGAAGTGGTTGCATCTGTTGCGGATAAGCTGGAGAAGGTCTGTTATAAATAGTGGTGGGGATGAAGTGAGGAGATTTGCACTTAAAGAAACAAAACAATCAAAGGATGGAGGGACAAGGAAATTGAATCCTTCGAATCTGAAGTTAAGGTTATATTCATTACAGCCTTATGATGTCCAGAATATTAAATATATTTATCTTTTATAGATTTAAAGTAATGTTATCTCTTATTTCTAACTTGAATTAGAAAGCAAAAGAAGAGACTACGAGTGTTGTTCAATACCTTCATGGAGTTGAACATGATGTGGAACCCTTCGATCTATGATGCAAGGAATGATTTTGACTAAAATTTAGAAATGGTTCGTACCTGCTTTACTTAAACTAGAAGTAGCTTGTTATGTTAGTTTGCATTGAGAGAGGAATAATTCATCATTTCTCATTTCAGGAAGAAGTTGTTCTTAAAAGATATTGGCTTGCTTGGTACTGGGGCCTAGCTGCAAAGTATGGTAAATCAGATGGCATGCCTTTTTCTTTTGTTACTTTGAATTCTACATAGTTTTCTTTTTCTCATTTGCTAA

mRNA sequence

CTCAAACCCACGATTTTTCTATCTTTCTCAAATTTCTTTCATTCTCTTCTCAATTCTAAAATTTTCAAATCTCAAAATTTCCTTCTTTCTCTTCTAAAATGTCAAATTTCTTTCACTCTTCTATCTTTTTATTTTCAAATTTATTAAAATAAATTTATTAAAATTTATTTCACTCTTTTTATCTCCCTCTTTCTCTCCACGAAAACCCTTCAATTTGCGTATCCCCACCCTTCATCCGCGTCTGGCTTTTCGTCGACTTCTGCAGTCTCCCATCCGCATTTAGGACGGTGATAGCGACCCACAACGATTTGGTTATGTAAATCAAAATATCAAATTTTCCAAACCATTTCTTCTTTGAAACTTCCACATCTTCTTACCAGGAAAAAATAAGAACAATGACACCGGAGATGTGGTCGACAATCCTTACCACCCATGAGGTTGTAGTGATTGGTAGCAGGAAGTGGTTGCATCTGTTGCGGATAAGCTGGAGAAGGTCTGTTATAAATAGTGGTGGGGATGAAGTGAGGAGATTTGCACTTAAAGAAACAAAACAATCAAAGGATGGAGGGACAAGGAAATTGAATCCTTCGAATCTGAAGTTAAGATTTAAAGAAGAAGTTGTTCTTAAAAGATATTGGCTTGCTTGGTACTGGGGCCTAGCTGCAAAGTATGGTAAATCAGATGGCATGCCTTTTTCTTTTGTTACTTTGAATTCTACATAGTTTTCTTTTTCTCATTTGCTAA

Coding sequence (CDS)

ATGACACCGGAGATGTGGTCGACAATCCTTACCACCCATGAGGTTGTAGTGATTGGTAGCAGGAAGTGGTTGCATCTGTTGCGGATAAGCTGGAGAAGGTCTGTTATAAATAGTGGTGGGGATGAAGTGAGGAGATTTGCACTTAAAGAAACAAAACAATCAAAGGATGGAGGGACAAGGAAATTGAATCCTTCGAATCTGAAGTTAAGATTTAAAGAAGAAGTTGTTCTTAAAAGATATTGGCTTGCTTGGTACTGGGGCCTAGCTGCAAAGTATGGTAAATCAGATGGCATGCCTTTTTCTTTTGTTACTTTGAATTCTACATAG

Protein sequence

MTPEMWSTILTTHEVVVIGSRKWLHLLRISWRRSVINSGGDEVRRFALKETKQSKDGGTRKLNPSNLKLRFKEEVVLKRYWLAWYWGLAAKYGKSDGMPFSFVTLNST
Homology
[Close]
BLAST of MELO3C032673.2 vs. TAIR10
Match: AT5G13260.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 0 

Query: 73  EEVVLKRYWLAWYWGLAAKYG 94
           EEVVLKR WLA YWGLA++YG
Sbjct: 320 EEVVLKRCWLARYWGLASRYG 340

The following BLAST results are available for this feature:
BLAST of MELO3C032673.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032673.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G13260.16.2e-0480.95unknown protein[more]
BLAST of MELO3C032673.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032673.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0040008 regulation of growth
cellular_component GO:0030136 clathrin-coated vesicle
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032673.2.1MELO3C032673.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032673.2Cucumber (Chinese Long) v3cucmedB310
MELO3C032673.2Watermelon (97103) v2medwmbB488
MELO3C032673.2Wax gourdmedwgoB591
MELO3C032673.2Cucumber (Gy14) v2cgybmedB269
MELO3C032673.2Cucurbita maxima (Rimu)cmamedB280
MELO3C032673.2Cucurbita maxima (Rimu)cmamedB502
MELO3C032673.2Cucurbita moschata (Rifu)cmomedB266
MELO3C032673.2Cucurbita moschata (Rifu)cmomedB490
MELO3C032673.2Cucurbita pepo (Zucchini)cpemedB641
MELO3C032673.2Cucurbita pepo (Zucchini)cpemedB700
MELO3C032673.2Wild cucumber (PI 183967)cpimedB304
MELO3C032673.2Cucumber (Chinese Long) v2cumedB300
MELO3C032673.2Bottle gourd (USVL1VR-Ls)lsimedB466
MELO3C032673.2Watermelon (Charleston Gray)medwcgB485
MELO3C032673.2Watermelon (97103) v1medwmB505