MELO3C032669.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032669.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr07 : 11115784 .. 11116707 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTATTTGAATTGTACATTATTTGTTCACTTACTTTAATGTATATAATTATATTTATGTAAAAAATTTTGTAGGATGTCGTCAAGAAATTTTGGACTAGGAAATCGTAGTAGGTCATCTTCAAATGTGAATGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGTATGTATTCATTTCTATGTTAATCTTCTAGTTTTCTTTCAACATTAGATGTATTAATATTAATATTTCTTATGTAGGTTATAGTACAAAAACAAAAGGCCGAGGAGCAACTAGAGGGGTTGGACTTGAGAAATATGTCTAAACAAATGGTCCCATTCGAATTAGAATTGACTTTGAAGATAGAAAACCAATTTGTAAGGATTCCTTCAAGTTAAACTCTCAAATTGGAAAGGAGGTACGAGCGGTAGTACCACTTGAATGTGAACATTGGTCAGATGTATTGAAAGAGGTGAAAAGGGAGATAGTAGATAGACTTTCGGTAAGCTATTTAAGTTTAGTTTTAAGGAAATACTATGTAATTTGTTCTAGACCAAGTATAAACTAATTTGTTTTATTTCTTAATGCTAGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAGATGAGCGTGTTGCATAGAGACTTTCGTTGTTCACTACATAAAAGCTACAAAAAGTATGACTCTTCAGCTGAAGCACGAAAACACTGTGACAAACGAGTGGCACGAGATTTAGATTGGGCTCGTTTATGTGATCAATGGGAACGAGAAGACTTTAAGAGTAGATCTGAAGCAAATACTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACGATAA

mRNA sequence

TCTATTTGAATTGTACATTATTTGTTCACTTACTTTAATGTATATAATTATATTTATGTAAAAAATTTTGTAGGATGTCGTCAAGAAATTTTGGACTAGGAAATCGTAGTAGGTCATCTTCAAATGTGAATGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGTTATAGTACAAAAACAAAAGGCCGAGGAGCAACTAGAGGGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAGATGAGCGTGTTGCATAGAGACTTTCGTTGTTCACTACATAAAAGCTACAAAAAGTATGACTCTTCAGCTGAAGCACGAAAACACTGTGACAAACGAGTGGCACGAGATTTAGATTGGGCTCGTTTATGTGATCAATGGGAACGAGAAGACTTTAAGAGTAGATCTGAAGCAAATACTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACGATAA

Coding sequence (CDS)

ATGTCGTCAAGAAATTTTGGACTAGGAAATCGTAGTAGGTCATCTTCAAATGTGAATGAAGCAAACAATTCTAATCAAAATAGTATTGGTGAGCAAGAAGTGGTGTCCATAGATTCAGACATTCAAAGTTATAGTACAAAAACAAAAGGCCGAGGAGCAACTAGAGGGAATTACTTCATTCTAGACTTAAATGAACCTTTGGTACAAGATTATCTTGAACATGAGATGAGCGTGTTGCATAGAGACTTTCGTTGTTCACTACATAAAAGCTACAAAAAGTATGACTCTTCAGCTGAAGCACGAAAACACTGTGACAAACGAGTGGCACGAGATTTAGATTGGGCTCGTTTATGTGATCAATGGGAACGAGAAGACTTTAAGAGTAGATCTGAAGCAAATACTAAGGCACGATCTAAACTTCCATTCACCCATCGAGGTGGAACTTCAACATTTTTACGCCATAAGCAGAAAATGGTACGATAA

Protein sequence

MSSRNFGLGNRSRSSSNVNEANNSNQNSIGEQEVVSIDSDIQSYSTKTKGRGATRGNYFILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLCDQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKMVR

Homology

[Close]

BLAST of MELO3C032669.2 vs. NCBI nr
Match: KGN62059.1 (hypothetical protein Csa_2G294860 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 8.8e-45
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 57  NYFILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWAR 116
           NYFILDL++PLVQDYL+HEMSVL+RDF CSLHKSYKK DS  EARKHCDKRVA+D DWAR
Sbjct: 68  NYFILDLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDKRVAQDSDWAR 127

Query: 117 LCDQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKMV 160
           LCD+WERE FKSRSEANTKARSKLPFTHRGGT TFLRHKQKMV
Sbjct: 128 LCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKMV 170

[Close]

BLAST of MELO3C032669.2 vs. NCBI nr
Match: XP_019078959.1 (PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 59  FILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLC 118
           F LDL +  V+  LE ++S   R++RC LHK +KK+ +  EA+++  + V+   DW  LC
Sbjct: 100 FALDLTQEHVKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHESVSNQEDWDYLC 159

Query: 119 DQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRH 155
           D++  E+FK RS  N+  RSK+PF HRGG+ +F++H
Sbjct: 160 DRFSSEEFKRRSAINSVNRSKMPFHHRGGSRSFIQH 195

[Close]

BLAST of MELO3C032669.2 vs. NCBI nr
Match: XP_019080375.1 (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 59  FILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLC 118
           F LDL +  V+  LE ++S   R++RC LHK +KK+ +  EA+++  + V+   DW  LC
Sbjct: 87  FALDLTQEHVKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHESVSNQEDWDYLC 146

Query: 119 DQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRH 155
           D++  E+FK RS  N+  RSK+PF HRGG+ +F++H
Sbjct: 147 DRFSSEEFKRRSAINSVNRSKMPFHHRGGSRSFIQH 182

[Close]

BLAST of MELO3C032669.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 2.2e-11
Identity = 34/101 (33.66%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 58  YFILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARL 117
           +F +DL++ +V  ++E +M +  + +R  LH+ Y +++   EAR +  +R+    DW  L
Sbjct: 20  HFRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNPEDWNHL 79

Query: 118 CDQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKM 159
           CD+WE  ++K  ++ N K R+KLPF HR G+ +FL+ + ++
Sbjct: 80  CDRWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQLQHEL 120

[Close]

BLAST of MELO3C032669.2 vs. NCBI nr
Match: XP_022159083.1 (uncharacterized protein LOC111025525 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 59  FILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLC 118
           F +D+++P V  Y+ +E+    +D+R  LH+ YKK    A AR+   K + ++  W  LC
Sbjct: 93  FAVDISQPHVHRYILYEIGTRFKDYRAKLHRHYKKSRDPARARQKPYKDIKQE-XWNILC 152

Query: 119 DQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRH 155
           D+WE   +K +S  N  ARSKL F HRGG   FL H
Sbjct: 153 DRWESPAWKEKSARNKMARSKLRFNHRGGPKPFLCH 187

[Close]

BLAST of MELO3C032669.2 vs. TrEMBL
Match: tr|A0A0A0LM17|A0A0A0LM17_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.8e-45
Identity = 90/103 (87.38%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 57  NYFILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWAR 116
           NYFILDL++PLVQDYL+HEMSVL+RDF CSLHKSYKK DS  EARKHCDKRVA+D DWAR
Sbjct: 68  NYFILDLDDPLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDKRVAQDSDWAR 127

Query: 117 LCDQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKMV 160
           LCD+WERE FKSRSEANTKARSKLPFTHRGGT TFLRHKQKMV
Sbjct: 128 LCDRWEREGFKSRSEANTKARSKLPFTHRGGTVTFLRHKQKMV 170

[Close]

BLAST of MELO3C032669.2 vs. TrEMBL
Match: tr|A0A067DNP7|A0A067DNP7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041625mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 59  FILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLC 118
           F  D++ P + +Y+ H M   + D R + HK +KKY + +EAR+H  K +++  DW  LC
Sbjct: 3   FEFDMSMPHILNYVTHSMVERYLDHRYNCHKHFKKYATPSEARQHAYKNISQQ-DWDWLC 62

Query: 119 DQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQK 158
           + +E + FK +   N   R KL + HRGG+ +F  H++K
Sbjct: 63  NHFESDKFKEKVRKNVDNRKKLKYNHRGGSLSFPGHREK 100

[Close]

BLAST of MELO3C032669.2 vs. TrEMBL
Match: tr|A0A2H5Q237|A0A2H5Q237_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 63  LNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLCDQWE 122
           ++ P + +Y+ H M   + D R + HK +KKY + +EAR+H  K +++  DW  LC+ +E
Sbjct: 1   MSMPHILNYVTHSMVERYLDHRYNCHKHFKKYATPSEARQHAYKNISQQ-DWDWLCNHFE 60

Query: 123 REDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQK 158
            + FK +   N   R KL + HRGG+ +F  H++K
Sbjct: 61  SDKFKEKVRKNVDNRKKLKYNHRGGSLSFPGHREK 94

[Close]

BLAST of MELO3C032669.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 58  YFILDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKH-CDKRVARDLDWAR 117
           +F+LD N+  +  ++EH+M    ++F+   H+ +KKY    EAR +  +  V RD DW  
Sbjct: 116 FFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHF 175

Query: 118 LCDQWEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKM 159
           L D + R  F+ +S  N  AR K P+ H  G+ +FL+ + ++
Sbjct: 176 LYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYEL 217

[Close]

BLAST of MELO3C032669.2 vs. TrEMBL
Match: tr|A0A2P6RFD0|A0A2P6RFD0_ROSCH (Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0486961 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-06
Identity = 29/98 (29.59%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 61  LDLNEPLVQDYLEHEMSVLHRDFRCSLHKSYKKYDSSAEARKHCDKRVARDLDWARLCDQ 120
           +D++ P V+ Y+      +  +FR  L K ++++ +  EA ++  K V  + +WA LC  
Sbjct: 192 IDMSLPWVKRYVNKSFGTVFANFRYKLKKHFEQFSTKEEALENKHKDVKTEEEWAFLCTY 251

Query: 121 WEREDFKSRSEANTKARSKLPFTHRGGTSTFLRHKQKM 159
           +  EDF+  SE N+  RS+L + H+ G+ +F+ H++++
Sbjct: 252 FSSEDFQIVSEKNSINRSRLKYHHKAGSKSFMLHQEQI 289

The following BLAST results are available for this feature:

BLAST of MELO3C032669.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62059.1	8.8e-45	87.38	hypothetical protein Csa_2G294860 [Cucumis sativus]	[more]
XP_019078959.1	1.0e-13	42.71	PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera]	[more]
XP_019080375.1	1.0e-13	42.71	PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera]	[more]
XP_022156286.1	2.2e-11	33.66	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
XP_022159083.1	3.2e-10	40.63	uncharacterized protein LOC111025525 [Momordica charantia]	[more]

BLAST of MELO3C032669.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032669.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032669.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM17\|A0A0A0LM17_CUCSA	5.8e-45	87.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1	[more]
tr\|A0A067DNP7\|A0A067DNP7_CITSI	4.7e-10	36.36	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041625m...	[more]
tr\|A0A2H5Q237\|A0A2H5Q237_CITUN	5.1e-09	35.79	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188460 PE=4 SV=1	[more]
tr\|E5GC72\|E5GC72_CUCME	1.1e-08	33.33	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A2P6RFD0\|A0A2P6RFD0_ROSCH	4.1e-06	29.59	Putative transposase, Ptta/En/Spm, plant OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032669.2.1	MELO3C032669.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 114..158 e-value: 3.3E-7 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33499	FAMILY NOT NAMED	coord: 64..151

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032669.2	Cucumber (Gy14) v2	cgybmedB269
MELO3C032669.2	Cucurbita maxima (Rimu)	cmamedB280
MELO3C032669.2	Cucurbita moschata (Rifu)	cmomedB266
MELO3C032669.2	Cucurbita pepo (Zucchini)	cpemedB641
MELO3C032669.2	Cucurbita pepo (Zucchini)	cpemedB700
MELO3C032669.2	Wild cucumber (PI 183967)	cpimedB304
MELO3C032669.2	Cucumber (Chinese Long) v2	cumedB300
MELO3C032669.2	Bottle gourd (USVL1VR-Ls)	lsimedB466
MELO3C032669.2	Watermelon (Charleston Gray)	medwcgB485
MELO3C032669.2	Watermelon (97103) v1	medwmB505
MELO3C032669.2	Cucumber (Chinese Long) v3	cucmedB310
MELO3C032669.2	Watermelon (97103) v2	medwmbB488
MELO3C032669.2	Wax gourd	medwgoB591