MELO3C032668.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032668.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUPF0261 protein BPP1817-like
Locationchr07 : 11000758 .. 11001399 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATGTTGTAGATATGTCAGAGCGGCTGCTAGAAAAACAACTTATTCAACTGTCAGAATGCAAATGACCAGGACAAGCAAGAAAAGTAGATGATCTTAACTAATGTAAGTACCATTGGGTCATTAGTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGGTATTCCCATATCAACATCACTTTATGATCAAAGGAAAAATGTGATTTAGTTAATTGGGACTTTTGAACCCTATAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

mRNA sequence

ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

Coding sequence (CDS)

ATGAAATTTTCTTCCAAGGAAAATGAGACCAAAGCTAAAGAGAGAGATGACAAAGAGAAGCATCATCCAACTCTTAAAGAAAGGCAGGAGAAATTTTATCTATTTCCTAACTTTAATTCACCTGTTGAGAAGTACTTCGTGTTAAAGGAGCTAATTCTAAAGTTAACTTATGAAAAGAAGATCGAACTAGATATTGATGAAGTAACTCAAACGAATCATGTTGCAGTCAAGATGACTTCAGCTGTTCGATTCCAACAAAAGATCATGTTGATAGACTCTCAAAACAAAGAAGAGCCTATGGTAGGGATGGATAGTCATGACTCATCGAAAAGGGAGACAACCAAATTCCATTCAAAAGGAGTTCTCATTCCATCAAAAGCATGGAAAAGGAAGCAACTCTCACAAAAAGAAGGGGAAAAGAAACAAGAAGATGTGGAAGCCTAG

Protein sequence

MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSSKRETTKFHSKGVLIPSKAWKRKQLSQKEGEKKQEDVEA
Homology
[Close]
BLAST of MELO3C032668.2 vs. NCBI nr
Match: XP_008444299.1 (PREDICTED: UPF0261 protein BPP1817-like, partial [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-44
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN-SPVEKYFVLKELILKLTYEK 60
           MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN SPVEKYFVLKELILKLTYEK
Sbjct: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNVSPVEKYFVLKELILKLTYEK 60

Query: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSS 110
           KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMV +   D S
Sbjct: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVEVTIVDVS 110

[Close]
BLAST of MELO3C032668.2 vs. NCBI nr
Match: ADN33709.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 77/224 (34.38%), Postives = 94/224 (41.96%), Query Frame = 0 

Query: 1   MKFSSKENETK-AKERDDKEKHHPTLKERQEKFYLF------------------------ 60
           +K  SK  ETK  +  D  EK  PTL+ERQ+K Y F                        
Sbjct: 344 LKSFSKRKETKHERNHDGDEKRCPTLRERQKKVYPFLDSNVANMLEQLIEKQLIQLPECE 403

Query: 61  ----------PNF-------NSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKM 120
                     PN+       + PVEK FVLKE ILKL  E KI+LDIDEV QTNHVAV M
Sbjct: 404 RPEQARKVDDPNYCKYHWVISHPVEKCFVLKERILKLARENKIQLDIDEVAQTNHVAVNM 463

Query: 121 TSA------------------------VRFQQKIMLIDSQNKEEPMVG------------ 145
           TS+                        VRFQQKIM  +SQNK+EP+              
Sbjct: 464 TSSVPSSILLYNRRESLIQFGTFEPILVRFQQKIMTSNSQNKKEPIEDEGEEWIVVAHKK 523

[Close]
BLAST of MELO3C032668.2 vs. NCBI nr
Match: ADN33752.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 58/190 (30.53%), Postives = 81/190 (42.63%), Query Frame = 0 

Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPN----------------------- 60
           +K  SKE + + K +D+ EK  PTLKERQEK Y FP+                       
Sbjct: 213 LKLVSKEKKME-KRQDEGEKRCPTLKERQEKVYPFPDSDLSDMLDQLLKKQLIQLPEFKR 272

Query: 61  ------------------FNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMT 120
                              + P+EK FVLKELILKL  +KKIEL++D+V QTNH  + + 
Sbjct: 273 PVEMGRVNDPNYCKYHRVISHPIEKCFVLKELILKLALDKKIELELDDVAQTNHATIIIQ 332

Query: 121 SAVRFQQKIMLIDSQNKEEPMVGMDSHD----SSKRETTKFHSKGVLIPSKAW----KRK 142
              R      LI   + E  ++     D      + +  K   K V    + W    +RK
Sbjct: 333 PDSRLPVVGSLIQFGSLEPVIIHSSPEDLQNNDFQTDGPKEEEKQVDNVEEGWTLVTRRK 392

[Close]
BLAST of MELO3C032668.2 vs. TrEMBL
Match: tr|A0A1S3B9K4|A0A1S3B9K4_CUCME (UPF0261 protein BPP1817-like OS=Cucumis melo OX=3656 GN=LOC103487666 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN-SPVEKYFVLKELILKLTYEK 60
           MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFN SPVEKYFVLKELILKLTYEK
Sbjct: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPNFNVSPVEKYFVLKELILKLTYEK 60

Query: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVGMDSHDSS 110
           KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMV +   D S
Sbjct: 61  KIELDIDEVTQTNHVAVKMTSAVRFQQKIMLIDSQNKEEPMVEVTIVDVS 110

[Close]
BLAST of MELO3C032668.2 vs. TrEMBL
Match: tr|E5GB67|E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.5e-10
Identity = 77/224 (34.38%), Postives = 94/224 (41.96%), Query Frame = 0 

Query: 1   MKFSSKENETK-AKERDDKEKHHPTLKERQEKFYLF------------------------ 60
           +K  SK  ETK  +  D  EK  PTL+ERQ+K Y F                        
Sbjct: 344 LKSFSKRKETKHERNHDGDEKRCPTLRERQKKVYPFLDSNVANMLEQLIEKQLIQLPECE 403

Query: 61  ----------PNF-------NSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKM 120
                     PN+       + PVEK FVLKE ILKL  E KI+LDIDEV QTNHVAV M
Sbjct: 404 RPEQARKVDDPNYCKYHWVISHPVEKCFVLKERILKLARENKIQLDIDEVAQTNHVAVNM 463

Query: 121 TSA------------------------VRFQQKIMLIDSQNKEEPMVG------------ 145
           TS+                        VRFQQKIM  +SQNK+EP+              
Sbjct: 464 TSSVPSSILLYNRRESLIQFGTFEPILVRFQQKIMTSNSQNKKEPIEDEGEEWIVVAHKK 523

[Close]
BLAST of MELO3C032668.2 vs. TrEMBL
Match: tr|E5GBB0|E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 58/190 (30.53%), Postives = 81/190 (42.63%), Query Frame = 0 

Query: 1   MKFSSKENETKAKERDDKEKHHPTLKERQEKFYLFPN----------------------- 60
           +K  SKE + + K +D+ EK  PTLKERQEK Y FP+                       
Sbjct: 213 LKLVSKEKKME-KRQDEGEKRCPTLKERQEKVYPFPDSDLSDMLDQLLKKQLIQLPEFKR 272

Query: 61  ------------------FNSPVEKYFVLKELILKLTYEKKIELDIDEVTQTNHVAVKMT 120
                              + P+EK FVLKELILKL  +KKIEL++D+V QTNH  + + 
Sbjct: 273 PVEMGRVNDPNYCKYHRVISHPIEKCFVLKELILKLALDKKIELELDDVAQTNHATIIIQ 332

Query: 121 SAVRFQQKIMLIDSQNKEEPMVGMDSHD----SSKRETTKFHSKGVLIPSKAW----KRK 142
              R      LI   + E  ++     D      + +  K   K V    + W    +RK
Sbjct: 333 PDSRLPVVGSLIQFGSLEPVIIHSSPEDLQNNDFQTDGPKEEEKQVDNVEEGWTLVTRRK 392

The following BLAST results are available for this feature:
BLAST of MELO3C032668.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008444299.12.4e-4493.64PREDICTED: UPF0261 protein BPP1817-like, partial [Cucumis melo][more]
ADN33709.11.4e-0934.38retrotransposon gag protein [Cucumis melo subsp. melo][more]
ADN33752.13.1e-0430.53ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C032668.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032668.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032668.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B9K4|A0A1S3B9K4_CUCME1.6e-4493.64UPF0261 protein BPP1817-like OS=Cucumis melo OX=3656 GN=LOC103487666 PE=4 SV=1[more]
tr|E5GB67|E5GB67_CUCME9.5e-1034.38Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GBB0|E5GBB0_CUCME2.1e-0430.53Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032668.2.1MELO3C032668.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..147

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032668.2Wax gourdmedwgoB591
MELO3C032668.2Cucumber (Gy14) v2cgybmedB269
MELO3C032668.2Cucurbita maxima (Rimu)cmamedB280
MELO3C032668.2Cucurbita moschata (Rifu)cmomedB266
MELO3C032668.2Cucurbita pepo (Zucchini)cpemedB641
MELO3C032668.2Cucurbita pepo (Zucchini)cpemedB700
MELO3C032668.2Wild cucumber (PI 183967)cpimedB304
MELO3C032668.2Cucumber (Chinese Long) v2cumedB300
MELO3C032668.2Bottle gourd (USVL1VR-Ls)lsimedB466
MELO3C032668.2Watermelon (Charleston Gray)medwcgB485
MELO3C032668.2Watermelon (97103) v1medwmB505
MELO3C032668.2Silver-seed gourdcarmedB0341
MELO3C032668.2Watermelon (97103) v2medwmbB488