MELO3C032599.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032599.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTranscription factor
Locationchr07 : 23900364 .. 23900666 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGAGAGAGACAAAGAAGACAAGAAATCAGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACATGGAAAGAGATAAATGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCACAAGTGATGCTATGTCTCCTCGCCGTAGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGAGTTAAGGTTGGGGTTTTCGTCATGCATCGTTCGTCGTTCGTGA

Protein sequence

MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKVICGTVHMERDKWREKKRKNKDQELTSDAMSPRRRSLSPRRKDVEMRRMELRLGFSSCIVRRS
Homology
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BLAST of MELO3C032599.2 vs. TAIR10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 10 RERERQRRQEISALYMSLRTLLPLEFIK 38
          RE ERQRRQE+++LY SLR+LLPL FIK
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIK 34

The following BLAST results are available for this feature:
BLAST of MELO3C032599.2 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032599.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51780.11.2e-0475.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of MELO3C032599.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032599.2 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032599.2.1MELO3C032599.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 11..53
e-value: 1.1E-4
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..80

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032599.2Cucumber (Gy14) v2cgybmedB222
MELO3C032599.2Cucumber (Gy14) v2cgybmedB266
MELO3C032599.2Cucumber (Gy14) v2cgybmedB357
MELO3C032599.2Cucumber (Gy14) v2cgybmedB358
MELO3C032599.2Cucumber (Gy14) v1cgymedB141
MELO3C032599.2Cucumber (Gy14) v1cgymedB500
MELO3C032599.2Cucurbita maxima (Rimu)cmamedB323
MELO3C032599.2Cucurbita maxima (Rimu)cmamedB350
MELO3C032599.2Cucurbita maxima (Rimu)cmamedB782
MELO3C032599.2Cucurbita moschata (Rifu)cmomedB309
MELO3C032599.2Cucurbita moschata (Rifu)cmomedB336
MELO3C032599.2Cucurbita pepo (Zucchini)cpemedB238
MELO3C032599.2Cucurbita pepo (Zucchini)cpemedB496
MELO3C032599.2Wild cucumber (PI 183967)cpimedB248
MELO3C032599.2Wild cucumber (PI 183967)cpimedB301
MELO3C032599.2Wild cucumber (PI 183967)cpimedB402
MELO3C032599.2Wild cucumber (PI 183967)cpimedB403
MELO3C032599.2Cucumber (Chinese Long) v2cumedB246
MELO3C032599.2Cucumber (Chinese Long) v2cumedB297
MELO3C032599.2Cucumber (Chinese Long) v2cumedB394
MELO3C032599.2Cucumber (Chinese Long) v2cumedB395
MELO3C032599.2Melon (DHL92) v3.6.1medmedB019
MELO3C032599.2Melon (DHL92) v3.6.1medmedB020
MELO3C032599.2Melon (DHL92) v3.6.1medmedB149
MELO3C032599.2Bottle gourd (USVL1VR-Ls)lsimedB041
MELO3C032599.2Bottle gourd (USVL1VR-Ls)lsimedB471
MELO3C032599.2Watermelon (Charleston Gray)medwcgB460
MELO3C032599.2Watermelon (Charleston Gray)medwcgB461
MELO3C032599.2Watermelon (Charleston Gray)medwcgB472
MELO3C032599.2Watermelon (Charleston Gray)medwcgB479
MELO3C032599.2Watermelon (97103) v1medwmB491
MELO3C032599.2Watermelon (97103) v1medwmB511
MELO3C032599.2Watermelon (97103) v1medwmB515
MELO3C032599.2Watermelon (97103) v1medwmB517
MELO3C032599.2Silver-seed gourdcarmedB0930
MELO3C032599.2Cucumber (Chinese Long) v3cucmedB307
MELO3C032599.2Cucumber (Chinese Long) v3cucmedB411
MELO3C032599.2Watermelon (97103) v2medwmbB449
MELO3C032599.2Watermelon (97103) v2medwmbB476
MELO3C032599.2Watermelon (97103) v2medwmbB482
MELO3C032599.2Wax gourdmedwgoB573
MELO3C032599.2Cucurbita moschata (Rifu)cmomedB779