MELO3C032592.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032592.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	GDSL esterase/lipase
Location	chr07 : 23336820 .. 23337129 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCGACACTTATTGGTTGTGCTTCTTTCTACTTATGGAAGTATTGTAGTGAGAATTGAGCGTGTATTGAGGAGATAAATGATATGGTTATGGAGTCCAACTTTGCCATGAGATACATGGTCGAGGAGCTCAACACGGAGCTGCCCGATTCGAGTATAATCTTATGTGATTTGCTTCAAGATTCAATGAATATCTTGAAGAATAATGAATATTATGGTGTGAATGAGAATCTAACGTCTTTTCACTCTCTTCACCATGATCCAAATTTGTCTCTCTCATTGTGTTAGTCCCTTCTTTTCCATGTAG

mRNA sequence

ATGGGATCGACACTTATTGGTTGTGCTTCTTTCTACTTATGGAAGTATTGTAGTGAGAATTGAGCGTGTATTGAGGAGATAAATGATATGGTTATGGAGTCCAACTTTGCCATGAGATACATGGTCGAGGAGCTCAACACGGAGCTGCCCGATTCGAGTATAATCTTATGTGATTTGCTTCAAGATTCAATGAATATCTTGAAGAATAATGAATATTATGGTGTGAATGAGAATCTAACGTCTTTTCACTCTCTTCACCATGATCCAAATTTGTCTCTCTCATTGTGTTAGTCCCTTCTTTTCCATGTAG

Coding sequence (CDS)

ATGGTTATGGAGTCCAACTTTGCCATGAGATACATGGTCGAGGAGCTCAACACGGAGCTGCCCGATTCGAGTATAATCTTATGTGATTTGCTTCAAGATTCAATGAATATCTTGAAGAATAATGAATATTATGGTGTGAATGAGAATCTAACGTCTTTTCACTCTCTTCACCATGATCCAAATTTGTCTCTCTCATTGTGTTAG

Protein sequence

MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVNENLTSFHSLHHDPNLSLSLC

Homology

[Close]

BLAST of MELO3C032592.2 vs. NCBI nr
Match: XP_008452220.1 (PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRYMVEEL  ELPDSSII CDLL+ SM+ILKN+EYYG N
Sbjct: 286 MVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNHEYYGFN 332

[Close]

BLAST of MELO3C032592.2 vs. NCBI nr
Match: XP_004145656.2 (PREDICTED: GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothetical protein Csa_3G270280 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-11
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRY+VEEL  ELPDS+II CDLLQ SM+ILKN+EYYG N
Sbjct: 284 MVMEFNFAMRYVVEELGMELPDSNIIFCDLLQGSMDILKNHEYYGFN 330

[Close]

BLAST of MELO3C032592.2 vs. NCBI nr
Match: XP_022136745.1 (GDSL esterase/lipase At1g71691 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRYMVEEL  ELPDSSII CDLL+ SM+ILKN+E YG N
Sbjct: 280 MVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNHERYGFN 326

[Close]

BLAST of MELO3C032592.2 vs. NCBI nr
Match: XP_022931385.1 (GDSL esterase/lipase At1g71691 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRY+VEEL  ELPD SII CDLLQ SM+ILKN+E YG N
Sbjct: 280 MVMEFNFAMRYIVEELGMELPDLSIIFCDLLQGSMDILKNHERYGFN 326

[Close]

BLAST of MELO3C032592.2 vs. NCBI nr
Match: XP_022985405.1 (GDSL esterase/lipase At1g71691 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRY+VEEL  ELPD SII CDLLQ SM+ILKN+E YG N
Sbjct: 280 MVMEFNFAMRYIVEELGMELPDLSIIFCDLLQGSMDILKNHERYGFN 326

[Close]

BLAST of MELO3C032592.2 vs. TAIR10
Match: AT4G10950.1 (SGNH hydrolase-type esterase superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 6.5e-12
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVNE 49
           M+MESNF MRY V++LN ELP +SII CD+ Q +M+IL+N+++YG NE
Sbjct: 283 MIMESNFVMRYTVDKLNRELPGASIIYCDVFQSAMDILRNHQHYGFNE 330

[Close]

BLAST of MELO3C032592.2 vs. TrEMBL
Match: tr|A0A1S3BSQ9|A0A1S3BSQ9_CUCME (GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRYMVEEL  ELPDSSII CDLL+ SM+ILKN+EYYG N
Sbjct: 286 MVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNHEYYGFN 332

[Close]

BLAST of MELO3C032592.2 vs. TrEMBL
Match: tr|A0A0A0L7F0|A0A0A0L7F0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVN 48
           MVME NFAMRY+VEEL  ELPDS+II CDLLQ SM+ILKN+EYYG N
Sbjct: 284 MVMEFNFAMRYVVEELGMELPDSNIIFCDLLQGSMDILKNHEYYGFN 330

[Close]

BLAST of MELO3C032592.2 vs. TrEMBL
Match: tr|M4F2G6|M4F2G6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVNE 49
           M+MESNF MRY VE+LN ELP +S+I CD+ Q +M+ILKN++ YG NE
Sbjct: 276 MIMESNFVMRYTVEQLNRELPGASVIYCDVFQSAMDILKNHQLYGFNE 323

[Close]

BLAST of MELO3C032592.2 vs. TrEMBL
Match: tr|A0A0D3E934|A0A0D3E934_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106316656 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVNE 49
           M+MESNF MRY VE+LN ELP +S+I CD+ Q +M+ILKN++ YG NE
Sbjct: 276 MIMESNFVMRYTVEQLNRELPGASVIYCDVFQSAMDILKNHQLYGFNE 323

[Close]

BLAST of MELO3C032592.2 vs. TrEMBL
Match: tr|A0A078HU30|A0A078HU30_BRANA (BnaC09g26010D protein OS=Brassica napus OX=3708 GN=BnaC09g26010D PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   MVMESNFAMRYMVEELNTELPDSSIILCDLLQDSMNILKNNEYYGVNE 49
           M+MESNF MRY VE+LN ELP +S+I CD+ Q +M+ILKN++ YG NE
Sbjct: 276 MIMESNFVMRYTVEQLNRELPGASVIYCDVFQSAMDILKNHQLYGFNE 323

The following BLAST results are available for this feature:

BLAST of MELO3C032592.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452220.1	2.0e-11	80.85	PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo]	[more]
XP_004145656.2	5.9e-11	78.72	PREDICTED: GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothet...	[more]
XP_022136745.1	2.3e-10	78.72	GDSL esterase/lipase At1g71691 [Momordica charantia]	[more]
XP_022931385.1	1.5e-09	76.60	GDSL esterase/lipase At1g71691 [Cucurbita moschata]	[more]
XP_022985405.1	1.5e-09	76.60	GDSL esterase/lipase At1g71691 [Cucurbita maxima]	[more]

BLAST of MELO3C032592.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10950.1	6.5e-12	60.42	SGNH hydrolase-type esterase superfamily protein	[more]

BLAST of MELO3C032592.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032592.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSQ9\|A0A1S3BSQ9_CUCME	1.4e-11	80.85	GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3...	[more]
tr\|A0A0A0L7F0\|A0A0A0L7F0_CUCSA	3.9e-11	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1	[more]
tr\|M4F2G6\|M4F2G6_BRARP	1.1e-08	62.50	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1	[more]
tr\|A0A0D3E934\|A0A0D3E934_BRAOL	1.1e-08	62.50	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10631665...	[more]
tr\|A0A078HU30\|A0A078HU30_BRANA	1.1e-08	62.50	BnaC09g26010D protein OS=Brassica napus OX=3708 GN=BnaC09g26010D PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032592.2.1	MELO3C032592.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22835	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	coord: 1..48
None	No IPR available	PANTHER	PTHR22835:SF281	SGNH HYDROLASE-TYPE ESTERASE SUPERFAMILY PROTEIN	coord: 1..48

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032592.2	Watermelon (97103) v2	medwmbB449
MELO3C032592.2	Watermelon (97103) v2	medwmbB476
MELO3C032592.2	Cucurbita moschata (Rifu)	cmomedB779
MELO3C032592.2	Cucumber (Gy14) v2	cgybmedB222
MELO3C032592.2	Cucumber (Gy14) v2	cgybmedB357
MELO3C032592.2	Cucumber (Gy14) v1	cgymedB141
MELO3C032592.2	Cucumber (Gy14) v1	cgymedB500
MELO3C032592.2	Cucurbita maxima (Rimu)	cmamedB323
MELO3C032592.2	Cucurbita maxima (Rimu)	cmamedB350
MELO3C032592.2	Cucurbita maxima (Rimu)	cmamedB782
MELO3C032592.2	Cucurbita moschata (Rifu)	cmomedB309
MELO3C032592.2	Cucurbita moschata (Rifu)	cmomedB336
MELO3C032592.2	Cucurbita pepo (Zucchini)	cpemedB238
MELO3C032592.2	Cucurbita pepo (Zucchini)	cpemedB486
MELO3C032592.2	Wild cucumber (PI 183967)	cpimedB248
MELO3C032592.2	Wild cucumber (PI 183967)	cpimedB402
MELO3C032592.2	Cucumber (Chinese Long) v2	cumedB246
MELO3C032592.2	Cucumber (Chinese Long) v2	cumedB394
MELO3C032592.2	Melon (DHL92) v3.6.1	medmedB019
MELO3C032592.2	Melon (DHL92) v3.6.1	medmedB149
MELO3C032592.2	Bottle gourd (USVL1VR-Ls)	lsimedB041
MELO3C032592.2	Bottle gourd (USVL1VR-Ls)	lsimedB408
MELO3C032592.2	Bottle gourd (USVL1VR-Ls)	lsimedB473
MELO3C032592.2	Watermelon (Charleston Gray)	medwcgB461
MELO3C032592.2	Watermelon (Charleston Gray)	medwcgB472
MELO3C032592.2	Watermelon (Charleston Gray)	medwcgB491
MELO3C032592.2	Watermelon (97103) v1	medwmB496
MELO3C032592.2	Watermelon (97103) v1	medwmB511
MELO3C032592.2	Watermelon (97103) v1	medwmB515
MELO3C032592.2	Silver-seed gourd	carmedB0046
MELO3C032592.2	Silver-seed gourd	carmedB0370
MELO3C032592.2	Silver-seed gourd	carmedB0603
MELO3C032592.2	Cucumber (Chinese Long) v3	cucmedB411