MELO3C032552.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032552.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	TOX high mobility group box family member 4-A, putative isoform 4
Location	chr07 : 20779453 .. 20779675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAAAGCTTACTTCTTCTACTGCAGGCAGCATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATCGACCATCATGCTAATCAATCTCAACTTCAATTTTTTTTCCACACAGAAGAAAAATATGACAAGAAACAATG

mRNA sequence

AAATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAAAGCTTACTTCTTCTACTGCAGGCAGCATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATCGACCATCATGCTAATCAATCTCAACTTCAATTTTTTTTCCACACAGAAGAAAAATATGACAAGAAACAATG

Coding sequence (CDS)

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAAAGCTTACTTCTTCTACTGCAGGCAGCATATGAAGAAAGAGATGAAGCAAGAGATCAACTGCAGAAACTGATGAACAAGATTATGCCAACTTCAATTAACTTCATCGACCATCATGCTAATCAATCTCAACTTCAATTTTTTTTCCACACAGAAGAAAAATATGACAAGAAACAA

Protein sequence

MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTSINFIDHHANQSQLQFFFHTEEKYDKKQ

Homology

[Close]

BLAST of MELO3C032552.2 vs. NCBI nr
Match: XP_011657251.1 (PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus] >KGN47356.1 hypothetical protein Csa_6G303220 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEES+KNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPT+
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C032552.2 vs. NCBI nr
Match: XP_022148299.1 (uncharacterized protein LOC111016987 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
           MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNK MPT+
Sbjct: 61  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 106

[Close]

BLAST of MELO3C032552.2 vs. NCBI nr
Match: XP_022943940.1 (uncharacterized protein LOC111448511 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C032552.2 vs. NCBI nr
Match: XP_022986908.1 (uncharacterized protein LOC111484506 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C032552.2 vs. NCBI nr
Match: XP_023511993.1 (uncharacterized protein LOC111776837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNK MPT+
Sbjct: 47 MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKFMPTA 92

[Close]

BLAST of MELO3C032552.2 vs. TAIR10
Match: AT2G28690.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 47.0 bits (110), Expect = 5.8e-06
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 2  EANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTSINFIDHHANQSQLQF 61
          +ANEE+  ++E+VK+LL LL+ A +ERDEA+DQLQKL+     +SI   + H +     F
Sbjct: 34 KANEETKLHQEEVKNLLHLLKLARQERDEAKDQLQKLLTIKTNSSITESNSHGSSPVDSF 93

Query: 62 F 63
          F
Sbjct: 94 F 94

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BLAST of MELO3C032552.2 vs. TrEMBL
Match: tr|A0A0A0KHV7|A0A0A0KHV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEES+KNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPT+
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C032552.2 vs. TrEMBL
Match: tr|A0A1S3BKE0|A0A1S3BKE0_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-13
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEA+EESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPT+
Sbjct: 33 MEASEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTT 78

[Close]

BLAST of MELO3C032552.2 vs. TrEMBL
Match: tr|A0A2I4EMN7|A0A2I4EMN7_9ROSI (uncharacterized protein LOC108990971 isoform X1 OS=Juglans regia OX=51240 GN=LOC108990971 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-08
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEE  KNKE VKSLL LL+ A +ERDEARDQLQKL+NK+MP+S
Sbjct: 33 MEANEEIRKNKEYVKSLLNLLKIANQERDEARDQLQKLLNKLMPSS 78

[Close]

BLAST of MELO3C032552.2 vs. TrEMBL
Match: tr|A0A2I4EMN8|A0A2I4EMN8_9ROSI (uncharacterized protein LOC108990971 isoform X2 OS=Juglans regia OX=51240 GN=LOC108990971 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-08
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMPTS 47
          MEANEE  KNKE VKSLL LL+ A +ERDEARDQLQKL+NK+MP+S
Sbjct: 20 MEANEEIRKNKEYVKSLLNLLKIANQERDEARDQLQKLLNKLMPSS 65

[Close]

BLAST of MELO3C032552.2 vs. TrEMBL
Match: tr|A0A2R6PFE9|A0A2R6PFE9_ACTCH (Centromere protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30226 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1  MEANEESIKNKEKVKSLLLLLQAAYEERDEARDQLQKLMNKIMP 45
          MEANEE  KNKE VK L+ LL+ A +ERDEARDQLQKL+N++MP
Sbjct: 33 MEANEEMRKNKEYVKQLVQLLKIACQERDEARDQLQKLLNQLMP 76

The following BLAST results are available for this feature:

BLAST of MELO3C032552.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657251.1	6.3e-14	95.65	PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus] >KGN47356.1 hy...	[more]
XP_022148299.1	1.4e-13	95.65	uncharacterized protein LOC111016987 [Momordica charantia]	[more]
XP_022943940.1	1.4e-13	95.65	uncharacterized protein LOC111448511 [Cucurbita moschata]	[more]
XP_022986908.1	1.4e-13	95.65	uncharacterized protein LOC111484506 [Cucurbita maxima]	[more]
XP_023511993.1	1.4e-13	95.65	uncharacterized protein LOC111776837 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C032552.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28690.1	5.8e-06	45.90	Protein of unknown function (DUF1635)	[more]

BLAST of MELO3C032552.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032552.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHV7\|A0A0A0KHV7_CUCSA	4.1e-14	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G303220 PE=4 SV=1	[more]
tr\|A0A1S3BKE0\|A0A1S3BKE0_CUCME	1.2e-13	95.65	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103490578 PE=4 SV=1	[more]
tr\|A0A2I4EMN7\|A0A2I4EMN7_9ROSI	5.8e-08	76.09	uncharacterized protein LOC108990971 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4EMN8\|A0A2I4EMN8_9ROSI	5.8e-08	76.09	uncharacterized protein LOC108990971 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2R6PFE9\|A0A2R6PFE9_ACTCH	2.4e-06	70.45	Centromere protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032552.2.1	MELO3C032552.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..41
None	No IPR available	PANTHER	PTHR33431:SF2	GB\|AAD24366.1	coord: 3..49
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 1..43 e-value: 5.3E-8 score: 33.0
IPR012862	Protein of unknown function DUF1635	PANTHER	PTHR33431	FAMILY NOT NAMED	coord: 3..49

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032552.2	Wax gourd	medwgoB582
MELO3C032552.2	Wax gourd	medwgoB604
MELO3C032552.2	Cucumber (Gy14) v2	cgybmedB268
MELO3C032552.2	Cucumber (Gy14) v1	cgymedB451
MELO3C032552.2	Cucurbita maxima (Rimu)	cmamedB351
MELO3C032552.2	Cucurbita maxima (Rimu)	cmamedB508
MELO3C032552.2	Cucurbita maxima (Rimu)	cmamedB786
MELO3C032552.2	Cucurbita maxima (Rimu)	cmamedB790
MELO3C032552.2	Cucurbita moschata (Rifu)	cmomedB337
MELO3C032552.2	Cucurbita moschata (Rifu)	cmomedB496
MELO3C032552.2	Cucurbita moschata (Rifu)	cmomedB785
MELO3C032552.2	Cucurbita moschata (Rifu)	cmomedB787
MELO3C032552.2	Cucurbita pepo (Zucchini)	cpemedB239
MELO3C032552.2	Cucurbita pepo (Zucchini)	cpemedB491
MELO3C032552.2	Cucurbita pepo (Zucchini)	cpemedB495
MELO3C032552.2	Cucurbita pepo (Zucchini)	cpemedB647
MELO3C032552.2	Wild cucumber (PI 183967)	cpimedB303
MELO3C032552.2	Cucumber (Chinese Long) v2	cumedB299
MELO3C032552.2	Bottle gourd (USVL1VR-Ls)	lsimedB345
MELO3C032552.2	Bottle gourd (USVL1VR-Ls)	lsimedB474
MELO3C032552.2	Watermelon (Charleston Gray)	medwcgB481
MELO3C032552.2	Watermelon (97103) v1	medwmB495
MELO3C032552.2	Silver-seed gourd	carmedB0043
MELO3C032552.2	Silver-seed gourd	carmedB0048
MELO3C032552.2	Silver-seed gourd	carmedB0325
MELO3C032552.2	Silver-seed gourd	carmedB0662
MELO3C032552.2	Cucumber (Chinese Long) v3	cucmedB309
MELO3C032552.2	Watermelon (97103) v2	medwmbB484