MELO3C032515.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032515.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTetratricopeptide repeat protein 1
Locationchr07 : 16788716 .. 16788994 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAACAATATGCACTGCAAAAACAAATGTCTAAATTCAAATGGACAAAAATGTACATAAAGAAAGAATAATAA

mRNA sequence

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAACAATATGCACTGCAAAAACAAATGTCTAAATTCAAATGGACAAAAATGTACATAAAGAAAGAATAATAA

Coding sequence (CDS)

ATGAAAGGATTGGCAAAAGAGAGCTTAATGGATTGCATAATGTTTGTGAATGGTAGAATGAAGATGGATGAGGGTGCAAATAAGAGAATCAAGATTCTATATCATGCAAAAAGAATGATTAGCAAACAGATGGAAGCAACATGGCTTTTTTTAGTTTCACTAAGAGATGGAAGAATAATAAGCAACATGGAAGCAATACTACAGCCATAA

Protein sequence

MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLFLVSLRDGRIISNMEAILQP
Homology
[Close]
BLAST of MELO3C032515.2 vs. NCBI nr
Match: XP_008444580.1 (PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 5.7e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

[Close]
BLAST of MELO3C032515.2 vs. NCBI nr
Match: XP_004143023.2 (PREDICTED: uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hypothetical protein Csa_2G354890 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 5.7e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

[Close]
BLAST of MELO3C032515.2 vs. NCBI nr
Match: XP_022962238.1 (uncharacterized protein LOC111462748 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMD----EGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKM+     G +KRIKI YHA RMISKQMEA WLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMEAGNGTGESKRIKIPYHAARMISKQMEAAWLF 567

[Close]
BLAST of MELO3C032515.2 vs. NCBI nr
Match: XP_023546912.1 (uncharacterized protein LOC111805872 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 2.5e-12
Identity = 42/54 (77.78%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMD----EGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKM+     G +KRIKI YHA RMISKQMEA WLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMEAGNGTGESKRIKIPYHAARMISKQMEAAWLF 567

[Close]
BLAST of MELO3C032515.2 vs. NCBI nr
Match: XP_022131466.1 (uncharacterized protein LOC111004666 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKM E  +KRIKI YHA RMISKQM+ TWLF
Sbjct: 493 MKGLAKESLMDCIMFVNGGMKMAED-HKRIKIPYHAARMISKQMDGTWLF 541

[Close]
BLAST of MELO3C032515.2 vs. TAIR10
Match: AT5G43120.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           +KGL++ESLMDCIMFVNGR         R  I Y+A +MISKQMEATWLF
Sbjct: 512 IKGLSRESLMDCIMFVNGRC-------FRGNIPYYAAQMISKQMEATWLF 554

[Close]
BLAST of MELO3C032515.2 vs. TAIR10
Match: AT5G10200.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein)

HSP 1 Score: 43.9 bits (102), Expect = 4.7e-05
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEG--ANKRIKILYHAKRMISKQMEATWLF 51
           M GLAKESL+D I+F+N   + ++   + ++ K+  +A+R++ KQM A WLF
Sbjct: 486 MLGLAKESLLDAILFINECSQSNDPDLSMRQNKVPDYAERLVKKQMRAAWLF 537

[Close]
BLAST of MELO3C032515.2 vs. TAIR10
Match: AT3G50030.1 (ARM-repeat/Tetratricopeptide repeat (TPR)-like protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           +KG  +ESLMDC+ FV+ R+K     +   +I Y+A +MI KQM AT +F
Sbjct: 448 LKGSTRESLMDCLAFVDHRVK----HSNTQRIPYYAAQMIRKQMSATCIF 493

[Close]
BLAST of MELO3C032515.2 vs. TrEMBL
Match: tr|A0A1S3BA59|A0A1S3BA59_CUCME (uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

[Close]
BLAST of MELO3C032515.2 vs. TrEMBL
Match: tr|A0A0A0LL28|A0A0A0LL28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMFVNG MKMDEGANKRIKI YHA RMISKQMEATWLF
Sbjct: 514 MKGLAKESLMDCIMFVNGGMKMDEGANKRIKIPYHAARMISKQMEATWLF 563

[Close]
BLAST of MELO3C032515.2 vs. TrEMBL
Match: tr|A0A1R3H237|A0A1R3H237_COCAP (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_21769 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMF+NG +  ++  NKR+KI Y+A RMISKQM+ATWLF
Sbjct: 510 MKGLAKESLMDCIMFINGCINSEKKTNKRVKIPYYAARMISKQMDATWLF 559

[Close]
BLAST of MELO3C032515.2 vs. TrEMBL
Match: tr|A0A1R3HJZ1|A0A1R3HJZ1_9ROSI (Armadillo-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_28547 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKRIKILYHAKRMISKQMEATWLF 51
           MKGLAKESLMDCIMF+NG +  ++  NKR+KI Y+A RMISKQM+ATWLF
Sbjct: 498 MKGLAKESLMDCIMFINGCINSEKTNNKRVKIPYYAARMISKQMDATWLF 547

[Close]
BLAST of MELO3C032515.2 vs. TrEMBL
Match: tr|A0A2P5EZV6|A0A2P5EZV6_9ROSA (Clathrin, heavy chain OS=Trema orientalis OX=63057 GN=TorRG33x02_130990 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 1   MKGLAKESLMDCIMFVNGRMKMDEGANKR-IKILYHAKRMISKQMEATWLFLVS 54
           MKGLAKESLMDCIMF+NG +K D    KR +KI Y+A RMISKQMEATWLF +S
Sbjct: 525 MKGLAKESLMDCIMFINGCIKSDPEVTKRSVKIPYYAARMISKQMEATWLFAMS 578

The following BLAST results are available for this feature:
BLAST of MELO3C032515.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008444580.15.7e-1794.00PREDICTED: uncharacterized protein LOC103487852 [Cucumis melo][more]
XP_004143023.25.7e-1794.00PREDICTED: uncharacterized protein LOC101221149 [Cucumis sativus] >KGN62463.1 hy... [more]
XP_022962238.12.5e-1277.78uncharacterized protein LOC111462748 [Cucurbita moschata][more]
XP_023546912.12.5e-1277.78uncharacterized protein LOC111805872 [Cucurbita pepo subsp. pepo][more]
XP_022131466.15.5e-1282.00uncharacterized protein LOC111004666 [Momordica charantia][more]
BLAST of MELO3C032515.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G43120.11.4e-0964.00ARM-repeat/Tetratricopeptide repeat (TPR)-like protein[more]
AT5G10200.14.7e-0542.31ARM-repeat/Tetratricopeptide repeat (TPR)-like protein[more]
AT3G50030.11.4e-0446.00ARM-repeat/Tetratricopeptide repeat (TPR)-like protein[more]
BLAST of MELO3C032515.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032515.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BA59|A0A1S3BA59_CUCME3.8e-1794.00uncharacterized protein LOC103487852 OS=Cucumis melo OX=3656 GN=LOC103487852 PE=... [more]
tr|A0A0A0LL28|A0A0A0LL28_CUCSA3.8e-1794.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G354890 PE=4 SV=1[more]
tr|A0A1R3H237|A0A1R3H237_COCAP1.1e-1172.00Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_21769 PE=4 SV... [more]
tr|A0A1R3HJZ1|A0A1R3HJZ1_9ROSI1.8e-1172.00Armadillo-like helical OS=Corchorus olitorius OX=93759 GN=COLO4_28547 PE=4 SV=1[more]
tr|A0A2P5EZV6|A0A2P5EZV6_9ROSA4.0e-1172.22Clathrin, heavy chain OS=Trema orientalis OX=63057 GN=TorRG33x02_130990 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032515.2.1MELO3C032515.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22904:SF381SIMILARITY TO UNKNOWN PROTEINcoord: 1..51
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 1..51

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032515.2Cucumber (Gy14) v2cgybmedB272
MELO3C032515.2Cucumber (Gy14) v1cgymedB648
MELO3C032515.2Cucurbita maxima (Rimu)cmamedB359
MELO3C032515.2Cucurbita maxima (Rimu)cmamedB795
MELO3C032515.2Cucurbita moschata (Rifu)cmomedB338
MELO3C032515.2Cucurbita moschata (Rifu)cmomedB790
MELO3C032515.2Cucurbita pepo (Zucchini)cpemedB241
MELO3C032515.2Cucurbita pepo (Zucchini)cpemedB501
MELO3C032515.2Wild cucumber (PI 183967)cpimedB307
MELO3C032515.2Cucumber (Chinese Long) v2cumedB303
MELO3C032515.2Bottle gourd (USVL1VR-Ls)lsimedB284
MELO3C032515.2Watermelon (Charleston Gray)medwcgB448
MELO3C032515.2Silver-seed gourdcarmedB0389
MELO3C032515.2Cucumber (Chinese Long) v3cucmedB313
MELO3C032515.2Watermelon (97103) v2medwmbB458
MELO3C032515.2Wax gourdmedwgoB570