MELO3C032447.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032447.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ubiquitin carboxyl-terminal hydrolase 27
Location	chr07 : 3687668 .. 3689638 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTGATGTCGAGGATTGTTCCGGCAAATTTGGAGGAAAAAATTGGTATGGCTTTTAGTTTTTCGTTGTTTTGGTTCAATTTTAGTTTGCGATGCATAAAAATGGTTGTGTTATGGTATTGTACTTGATAAATGTTTATATAGTTAAAAGTAACTGTGTTTAACTATTGTACTAGACAACTGATAATATCTAAGATCTGTTTTCTTTTGCAATTGTTTGCTAGTAGTTTGTCGATATATATCGTTCATTATGATTTTTCCAGTTTTGAAACCTTATATGAGCTGTTATTTTTTAGTGTTCTCACTGGAAGAAATGTGGTCTATGATATTGGTGGGAAAAAATGAGCGGTGAAAATGGGAATCTTTAACGTCAGTTTTAAGCTGCATCAAAGACAAAAGATTAATGTTGTTTAAAATCGACATTAAGCTAACCTTTATTTTTTTTATTTCTGGAAAATCAATTTTCTCCCATTTCTCTTTAAAATCTCGTATCTATCTAAACTCTTACTCTCCCCAACCCTCTTTTCTCTCTCACTCACTCTTCCACCGTCCTACTAAACCACCACCATAGATGATCTATCGAAGCACGTCACGCCACCATTGCACCACAAAGCTTGTCGTGCCGTCGTTTCGTTTGGACAACAGCTCGTTGCGCTGTCTTTCGTTCGGATAGAAGCTCGTCTCCCCATCTCATCGTCGTTTCTTTCGGACAGCAGATTGTTGCGTCGTTGCACCATCGTTTCGTGGCCAGATCTGTTGTGTTCGTGTTTGTGCCCAAATCTGTTGTGTTTGTGCCTAGATTCATTGTGCCCAAATCTGTCGTGTTTGTGCCTAGATTCATTGTAGATTCGTTGTACTCAGATCGTTGTGTTCGTGCAAGTTGTTACAGATCTTTGTAGATCCGTTAGTGCATTTATGCATTTTGATTACCCTGCTCTTTTTTATTTGAATTTCTTGTGTTTTGGTTTTTTCGAGGATCAGATCGAGAAAGCGCCTTTGTATTGGGGAATCACTGTCGATGGATATGTATATTTGTAAGTGAAGTTTAGGTCAAAATCTTTTAAATGAAGGTTCTCTCTTTTAAATCACCTGAATATGTACATATGCAGGTTCTCACTTTTAAATGAAAAACCATCGTAGAAAACAGATTGTTTGTCTTTGGTTTCTTCAATTTTATGAACTTAGACAAACATATTTAATCCAACGTTGTATAGTATCAGGATTCACTCTCAAATGAAGCTCGCTGAAGTTTTTCTCATTCTCTAATTATGGATTTTTGCTTTAGGAAGATGAATATAATCTGTTAGTTTTGAATAGGCTTTGACTTCAGAAAGATGAATTGGCGGGTGGTTTTTGGCTCAATAAAAATATGTTGGTGTGTTTTAATTCTTGTTAAGTAAACAATTATTAAACTGTTAGTTTGTTGGTCACACTTAAGTTTTTCATTCATCTCTTACAGCACTCCTGTTTATATAAGGAAGTTGCTCGTTGTATTTATTTCTCAGACTTCTCCACTATTTCAATCAATGAGAACTATGTTTATTCAATCTTTTCAGTTCTGCATTTCATTTATAAAAACTATATCCAACCTGAGTCAAATTTAATTTACATGTATTTTTTATTTAATCTTCATTTAGGAATTGTATTCAGGAATTGTACTCATTTCCTTCCGAATGTGGATATTTTGTCGGGCTTTAGCTAGCTGTGTGCTTTTTCAACCTTTTCTTCAAAAGTTTGTGGAGGAATTTGAACTTCCTGAGGGAACGAGGAGTGAAGTTTTATCACTTACGGTTTCTTTGGCTGCACTATTAGAAAGTATATATTGTAATTTTTTTTTTCCTTTTCATTTGAAGGGTGTTTAGGCAGTTTGGTCTTTATGCTCATGATGCTGCTGAATTTGATATATTTAGAAGCAATTACGTCTTTGTTTTCGCTGCTCGTGTTTCATTGAAGTTTTTGAGGAATTGA

mRNA sequence

ATGTTTGTGATGTCGAGGATTGTTCCGGCAAATTTGGAGGAAAAAATTGCACGTCACGCCACCATTGCACCACAAAGCTTGTCGTGCCGTCGTTTCGTTTGGACAACAGCTCGTTGCGCTGTCTTTCGTTCGGATAGAAGCTCGTCTCCCCATCTCATCGTCGTTTCTTTCGGACAGCAGATTGTTGCGTCGTTGCACCATCGTTTCGTGGCCAGATCTGTTGTGTTCGTGTTTGTGCCCAAATCTGTTGTGTTTGTGCCTAGATTCATTGTGCCCAAATCTGTCGTGTTTGTGCCTAGATTCATTGTAGATTCGTTGTACTCAGATCGTTGTATCGAGAAAGCGCCTTTGTATTGGGGAATCACTGTCGATGGATATGAATTGTATTCAGGAATTGTACTCATTTCCTTCCGAATGTGGATATTTTGTCGGGCTTTAGCTAGCTGTGTGCTTTTTCAACCTTTTCTTCAAAAGTTTGTGGAGGAATTTGAACTTCCTGAGGGAACGAGGAGTGAAGTTTTATCACTTACGTTTGGTCTTTATGCTCATGATGCTGCTGAATTTGATATATTTAGAAGCAATTACGTCTTTGTTTTCGCTGCTCGTGTTTCATTGAAGTTTTTGAGGAATTGA

Coding sequence (CDS)

ATGTTTGTGATGTCGAGGATTGTTCCGGCAAATTTGGAGGAAAAAATTGCACGTCACGCCACCATTGCACCACAAAGCTTGTCGTGCCGTCGTTTCGTTTGGACAACAGCTCGTTGCGCTGTCTTTCGTTCGGATAGAAGCTCGTCTCCCCATCTCATCGTCGTTTCTTTCGGACAGCAGATTGTTGCGTCGTTGCACCATCGTTTCGTGGCCAGATCTGTTGTGTTCGTGTTTGTGCCCAAATCTGTTGTGTTTGTGCCTAGATTCATTGTGCCCAAATCTGTCGTGTTTGTGCCTAGATTCATTGTAGATTCGTTGTACTCAGATCGTTGTATCGAGAAAGCGCCTTTGTATTGGGGAATCACTGTCGATGGATATGAATTGTATTCAGGAATTGTACTCATTTCCTTCCGAATGTGGATATTTTGTCGGGCTTTAGCTAGCTGTGTGCTTTTTCAACCTTTTCTTCAAAAGTTTGTGGAGGAATTTGAACTTCCTGAGGGAACGAGGAGTGAAGTTTTATCACTTACGTTTGGTCTTTATGCTCATGATGCTGCTGAATTTGATATATTTAGAAGCAATTACGTCTTTGTTTTCGCTGCTCGTGTTTCATTGAAGTTTTTGAGGAATTGA

Protein sequence

MFVMSRIVPANLEEKIARHATIAPQSLSCRRFVWTTARCAVFRSDRSSSPHLIVVSFGQQIVASLHHRFVARSVVFVFVPKSVVFVPRFIVPKSVVFVPRFIVDSLYSDRCIEKAPLYWGITVDGYELYSGIVLISFRMWIFCRALASCVLFQPFLQKFVEEFELPEGTRSEVLSLTFGLYAHDAAEFDIFRSNYVFVFAARVSLKFLRN

Homology

[Close]

BLAST of MELO3C032447.2 vs. NCBI nr
Match: XP_004148458.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Cucumis sativus] >KGN62105.1 hypothetical protein Csa_2G298270 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 141 IFCRALASCVLFQPFLQKFVEEFELPEGTRSEVLSLTFGLYA 183
           +  +ALASCV FQPFLQKFVEEFEL EG RSE L LT  L A
Sbjct: 74  VILQALASCVFFQPFLQKFVEEFELHEGMRSEALPLTVSLAA 115

[Close]

BLAST of MELO3C032447.2 vs. NCBI nr
Match: XP_008457921.1 (PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 141 IFCRALASCVLFQPFLQKFVEEFELPEGTRSEVLSLTFGLYA 183
           +  +ALASCV FQPFLQKFVEEFEL EG R E L LT  L A
Sbjct: 74  VILQALASCVFFQPFLQKFVEEFELHEGMRREALPLTVSLAA 115

[Close]

BLAST of MELO3C032447.2 vs. TrEMBL
Match: tr|A0A0A0LJP9|A0A0A0LJP9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G298270 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-06
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 141 IFCRALASCVLFQPFLQKFVEEFELPEGTRSEVLSLTFGLYA 183
           +  +ALASCV FQPFLQKFVEEFEL EG RSE L LT  L A
Sbjct: 74  VILQALASCVFFQPFLQKFVEEFELHEGMRSEALPLTVSLAA 115

[Close]

BLAST of MELO3C032447.2 vs. TrEMBL
Match: tr|A0A1S3C667|A0A1S3C667_CUCME (ubiquitin carboxyl-terminal hydrolase 27 OS=Cucumis melo OX=3656 GN=LOC103497488 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 141 IFCRALASCVLFQPFLQKFVEEFELPEGTRSEVLSLTFGLYA 183
           +  +ALASCV FQPFLQKFVEEFEL EG R E L LT  L A
Sbjct: 74  VILQALASCVFFQPFLQKFVEEFELHEGMRREALPLTVSLAA 115

The following BLAST results are available for this feature:

BLAST of MELO3C032447.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148458.1	1.1e-05	71.43	PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Cucumis sativus] >KGN62105....	[more]
XP_008457921.1	4.0e-05	69.05	PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Cucumis melo]	[more]

BLAST of MELO3C032447.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032447.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032447.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJP9\|A0A0A0LJP9_CUCSA	7.0e-06	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G298270 PE=3 SV=1	[more]
tr\|A0A1S3C667\|A0A1S3C667_CUCME	2.7e-05	69.05	ubiquitin carboxyl-terminal hydrolase 27 OS=Cucumis melo OX=3656 GN=LOC103497488...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032447.2.1	MELO3C032447.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032447.2	Cucurbita maxima (Rimu)	cmamedB796
MELO3C032447.2	Cucurbita maxima (Rimu)	cmamedB797
MELO3C032447.2	Cucurbita moschata (Rifu)	cmomedB793
MELO3C032447.2	Cucurbita moschata (Rifu)	cmomedB794
MELO3C032447.2	Cucurbita pepo (Zucchini)	cpemedB502
MELO3C032447.2	Cucurbita pepo (Zucchini)	cpemedB503
MELO3C032447.2	Wild cucumber (PI 183967)	cpimedB404
MELO3C032447.2	Bottle gourd (USVL1VR-Ls)	lsimedB337
MELO3C032447.2	Silver-seed gourd	carmedB0687
MELO3C032447.2	Cucumber (Chinese Long) v3	cucmedB412
MELO3C032447.2	Watermelon (97103) v2	medwmbB489