MELO3C032388.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032388.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Envelope-like protein
Location	chr07 : 6850635 .. 6851085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCGATGACTTAGATGATATTCCACTGGCTCGTTTGATAAAGAAGGCTTTTGTTCCTGATGTTGTAACTAAAAAAAAATCTACTGATCTTGGTTTGTCAGTTCATTCTCAAGGAAGCTCTTCATCTAAAGGTGTGTTTATTCCTACTCCTGGCTTTCATCATACATCTGTCATAGAACCAATTCCATCGCATTATTCTTCACCGATTAGGTCCTCCATTCCTGACAAAACTACTACAACTGATTCCCATGTTGACCTTGCACGTGCTTCTGTTGATGAATCTGTTGCAACTGAAGGAAGAACTGATGTTTGCGATGACGAACCCCCTGCTGGTGATGACGATGTTGTTGAGTCTGTCAACACTGATGACCATAATGATAAGTTTTCTATTGATGATAATGTTGATCAAGGTGCTCATAATGATTCTCAACCAGAGACTCAACTAG

mRNA sequence

ATGGATTTCGATGACTTAGATGATATTCCACTGGCTCGTTTGATAAAGAAGGCTTTTGTTCCTGATGTTGTAACTAAAAAAAAATCTACTGATCTTGGTTTGTCAGTTCATTCTCAAGGAAGCTCTTCATCTAAAGCTGAAGGAAGAACTGATGTTTGCGATGACGAACCCCCTGCTGGTGATGACGATGTTGTTGAGTCTGTCAACACTGATGACCATAATGATAAGTTTTCTATTGATGATAATGTTGATCAAGGTGCTCATAATGATTCTCAACCAGAGACTCAACTAG

Coding sequence (CDS)

ATGGATTTCGATGACTTAGATGATATTCCACTGGCTCGTTTGATAAAGAAGGCTTTTGTTCCTGATGTTGTAACTAAAAAAAAATCTACTGATCTTGGTTTGTCAGTTCATTCTCAAGGAAGCTCTTCATCTAAAGCTGAAGGAAGAACTGATGTTTGCGATGACGAACCCCCTGCTGGTGATGACGATGTTGTTGAGTCTGTCAACACTGATGACCATAATGATAAGTTTTCTATTGATGATAATGTTGATCAAGGTGCTCATAATGATTCTCAACCAGAGACTCAACTA

Protein sequence

MDFDDLDDIPLARLIKKAFVPDVVTKKKSTDLGLSVHSQGSSSSKAEGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHNDSQPETQL

Homology

[Close]

BLAST of MELO3C032388.2 vs. NCBI nr
Match: XP_008466805.1 (PREDICTED: uncharacterized protein LOC103504128 [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-21
Identity = 71/127 (55.91%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MDFDDLDDIPLA------RLIKKAFVP-----------------------DVVTKKKSTD 60
           MDFDDLDDIPLA         K  F+P                        +  K  +TD
Sbjct: 58  MDFDDLDDIPLALHSQGSSSSKGVFIPTPGFHHTSVIEPIPSHYSSPIRSSIPDKTTTTD 117

Query: 61  LGLSVHSQGSSSSKA-EGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND 98
             + +       S A EGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND
Sbjct: 118 SHVDLARASVDESVATEGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND 177

[Close]

BLAST of MELO3C032388.2 vs. NCBI nr
Match: XP_008461533.1 (PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-04
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 2   DFDDLDDIPLARLIKKAFVPDVVTKKKSTDLGLSVHSQGSSSSK 46
           +FDDLDD+PLARL+KK   PDV   +KS DL LSVHSQ SS S+
Sbjct: 58  NFDDLDDVPLARLLKKVAAPDVFL-EKSVDLVLSVHSQESSPSE 100

[Close]

BLAST of MELO3C032388.2 vs. TrEMBL
Match: tr|A0A1S3CS40|A0A1S3CS40_CUCME (uncharacterized protein LOC103504128 OS=Cucumis melo OX=3656 GN=LOC103504128 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.1e-21
Identity = 71/127 (55.91%), Postives = 76/127 (59.84%), Query Frame = 0


Query: 1   MDFDDLDDIPLA------RLIKKAFVP-----------------------DVVTKKKSTD 60
           MDFDDLDDIPLA         K  F+P                        +  K  +TD
Sbjct: 58  MDFDDLDDIPLALHSQGSSSSKGVFIPTPGFHHTSVIEPIPSHYSSPIRSSIPDKTTTTD 117

Query: 61  LGLSVHSQGSSSSKA-EGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND 98
             + +       S A EGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND
Sbjct: 118 SHVDLARASVDESVATEGRTDVCDDEPPAGDDDVVESVNTDDHNDKFSIDDNVDQGAHND 177

[Close]

BLAST of MELO3C032388.2 vs. TrEMBL
Match: tr|A0A1S3CG84|A0A1S3CG84_CUCME (uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 2   DFDDLDDIPLARLIKKAFVPDVVTKKKSTDLGLSVHSQGSSSSK 46
           +FDDLDD+PLARL+KK   PDV   +KS DL LSVHSQ SS S+
Sbjct: 58  NFDDLDDVPLARLLKKVAAPDVFL-EKSVDLVLSVHSQESSPSE 100

The following BLAST results are available for this feature:

BLAST of MELO3C032388.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466805.1	3.2e-21	55.91	PREDICTED: uncharacterized protein LOC103504128 [Cucumis melo]	[more]
XP_008461533.1	6.0e-04	65.91	PREDICTED: uncharacterized protein LOC103500104 [Cucumis melo]	[more]

BLAST of MELO3C032388.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032388.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032388.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CS40\|A0A1S3CS40_CUCME	2.1e-21	55.91	uncharacterized protein LOC103504128 OS=Cucumis melo OX=3656 GN=LOC103504128 PE=...	[more]
tr\|A0A1S3CG84\|A0A1S3CG84_CUCME	3.9e-04	65.91	uncharacterized protein LOC103500104 OS=Cucumis melo OX=3656 GN=LOC103500104 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032388.2.1	MELO3C032388.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..83

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032388.2	Cucumber (Gy14) v2	cgybmedB275
MELO3C032388.2	Cucumber (Gy14) v1	cgymedB041
MELO3C032388.2	Cucurbita maxima (Rimu)	cmamedB035
MELO3C032388.2	Cucurbita maxima (Rimu)	cmamedB516
MELO3C032388.2	Cucurbita moschata (Rifu)	cmomedB025
MELO3C032388.2	Cucurbita moschata (Rifu)	cmomedB503
MELO3C032388.2	Cucurbita pepo (Zucchini)	cpemedB635
MELO3C032388.2	Cucurbita pepo (Zucchini)	cpemedB863
MELO3C032388.2	Wild cucumber (PI 183967)	cpimedB309
MELO3C032388.2	Cucumber (Chinese Long) v2	cumedB307
MELO3C032388.2	Bottle gourd (USVL1VR-Ls)	lsimedB340
MELO3C032388.2	Watermelon (Charleston Gray)	medwcgB455
MELO3C032388.2	Watermelon (97103) v1	medwmB529
MELO3C032388.2	Silver-seed gourd	carmedB0327
MELO3C032388.2	Silver-seed gourd	carmedB1024
MELO3C032388.2	Watermelon (97103) v2	medwmbB465
MELO3C032388.2	Wax gourd	medwgoB602