MELO3C032154.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032154.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein Ycf2-like
Location	chr06 : 23745009 .. 23745340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAATAATAGAAGCAATAAGGAGTCAACAATCTAGTTCTTCGGGTGCCCAATACATCAATGAATTTATGGTAAGCATGTTCTGTAGACTTTAATAATCTGTGTGCATGTGACAGAACCTTAACAAATACACTGTATCTGATATGTATTTGTTATGCAGGGAGCGAGGGCATTTGAAGAACACCTTGACAAAGTGAAGGAGGACCAAGAAGAAGATGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACGGTGCTTGAAAAAAGGGATGACGATAAAGACAAAGATGGAAAAGGGCTCATGGATGAAAGTCGAGCATAA

mRNA sequence

ATGAATAGAATAATAGAAGCAATAAGGAGTCAACAATCTAGTTCTTCGGGTGCCCAATACATCAATGAATTTATGGGAGCGAGGGCATTTGAAGAACACCTTGACAAAGTGAAGGAGGACCAAGAAGAAGATGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACGGTGCTTGAAAAAAGGGATGACGATAAAGACAAAGATGGAAAAGGGCTCATGGATGAAAGTCGAGCATAA

Coding sequence (CDS)

ATGAATAGAATAATAGAAGCAATAAGGAGTCAACAATCTAGTTCTTCGGGTGCCCAATACATCAATGAATTTATGGGAGCGAGGGCATTTGAAGAACACCTTGACAAAGTGAAGGAGGACCAAGAAGAAGATGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCCAACGGTGCTTGAAAAAAGGGATGACGATAAAGACAAAGATGGAAAAGGGCTCATGGATGAAAGTCGAGCATAA

Protein sequence

MNRIIEAIRSQQSSSSGAQYINEFMGARAFEEHLDKVKEDQEEDDDVEDLNLDSSNPTVLEKRDDDKDKDGKGLMDESRA

Homology

[Close]

BLAST of MELO3C032154.2 vs. NCBI nr
Match: XP_008450225.1 (PREDICTED: protein Ycf2-like [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 54/71 (76.06%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 4   IIEAIRSQQSSSSGAQYINEFMGARAFEEHLDKVKEDQEEDDDVEDLNLDSSNPTVLEKR 63
           I+EAIRSQQ SSS  QY  EFMGARAFEEHLDKVKEDQEE DDVEDL LDSSN TV EK 
Sbjct: 337 IMEAIRSQQCSSSDGQYTQEFMGARAFEEHLDKVKEDQEE-DDVEDLKLDSSNRTVFEKG 396

Query: 64  DDDKDKDGKGL 75
              K K  KGL
Sbjct: 397 MTMKTKTEKGL 406

[Close]

BLAST of MELO3C032154.2 vs. NCBI nr
Match: XP_011648518.1 (PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 8.4e-04
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 1  MNRIIEAIRSQQSSSSGAQYINEFMGARAFEEHLDKVKE 40
          +N I+E I+ +Q SSSGAQ  NE+MGAR+FE+HLDKV+E
Sbjct: 53 VNNILEDIKRKQPSSSGAQETNEYMGARSFEKHLDKVEE 91

[Close]

BLAST of MELO3C032154.2 vs. TrEMBL
Match: tr|A0A1S3BNT0|A0A1S3BNT0_CUCME (protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 54/71 (76.06%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 4   IIEAIRSQQSSSSGAQYINEFMGARAFEEHLDKVKEDQEEDDDVEDLNLDSSNPTVLEKR 63
           I+EAIRSQQ SSS  QY  EFMGARAFEEHLDKVKEDQEE DDVEDL LDSSN TV EK 
Sbjct: 337 IMEAIRSQQCSSSDGQYTQEFMGARAFEEHLDKVKEDQEE-DDVEDLKLDSSNRTVFEKG 396

Query: 64  DDDKDKDGKGL 75
              K K  KGL
Sbjct: 397 MTMKTKTEKGL 406

The following BLAST results are available for this feature:

BLAST of MELO3C032154.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450225.1	3.1e-14	76.06	PREDICTED: protein Ycf2-like [Cucumis melo]	[more]
XP_011648518.1	8.4e-04	64.10	PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus]	[more]

BLAST of MELO3C032154.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032154.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032154.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNT0\|A0A1S3BNT0_CUCME	2.0e-14	76.06	protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032154.2.1	MELO3C032154.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032154.2	Wax gourd	medwgoB538
MELO3C032154.2	Cucumber (Gy14) v2	cgybmedB217
MELO3C032154.2	Cucumber (Gy14) v1	cgymedB258
MELO3C032154.2	Cucurbita maxima (Rimu)	cmamedB150
MELO3C032154.2	Cucurbita maxima (Rimu)	cmamedB276
MELO3C032154.2	Cucurbita moschata (Rifu)	cmomedB138
MELO3C032154.2	Cucurbita pepo (Zucchini)	cpemedB763
MELO3C032154.2	Wild cucumber (PI 183967)	cpimedB241
MELO3C032154.2	Cucumber (Chinese Long) v2	cumedB240
MELO3C032154.2	Bottle gourd (USVL1VR-Ls)	lsimedB389
MELO3C032154.2	Watermelon (Charleston Gray)	medwcgB418
MELO3C032154.2	Watermelon (97103) v1	medwmB455
MELO3C032154.2	Silver-seed gourd	carmedB0379
MELO3C032154.2	Silver-seed gourd	carmedB0447
MELO3C032154.2	Cucumber (Chinese Long) v3	cucmedB233
MELO3C032154.2	Cucumber (Chinese Long) v3	cucmedB248
MELO3C032154.2	Watermelon (97103) v2	medwmbB425