MELO3C032150.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032150.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionNBS-LRR type resistance protein
Locationchr06 : 23650139 .. 23651002 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCATTGGTTGGACGTGATGAGGATTGACACTTCCTCTACGACCATTATATCAGTCGTGCATTCCAGGTATTTTTCATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATTAACAATATAATTGTTTTAATGCAGGAGCAATCACGGACGAACAAAGCTACTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTTGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTTTGGGAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGTCGAGGATGCGTTGTAAGTTATGCCCTTATTAATTATCCACTTTCATTATATATTTTTGCGCGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAACTGCTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAAATGTTGGGTAGACGACCAAGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGTTCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAATATATTGAATTACAAGCTAAACTTCATGAACCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAAGTATGAAAAAGATGATAGAAGAACTAACTCGTCCACAATAGGGACCACAACATGATCCCTAGCTCTGCGGGACGTATATGTCTCTATTATTCTTAAGTTTTTGAAATATATGATTATGTACTAAACTTAGTTATTTTTATACCATTTTTAGGACCGAAGGTGTAA

mRNA sequence

CGCATTGGTTGGACGTGATGAGGATTGACACTTCCTCTACGACCATTATATCAGTCGTGCATTCCAGGAGCAATCACGGACGAACAAAGCTACTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTTGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTTTGGGAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGTCGAGGATGCGTTAATCAACTGCTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAAATGTTGGGTAGACGACCAAGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGTTCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAATATATTGAATTACAAGCTAAACTTCATGAACCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAAGACCGAAGGTGTAA

Coding sequence (CDS)

ATGAGGATTGACACTTCCTCTACGACCATTATATCAGTCGTGCATTCCAGGAGCAATCACGGACGAACAAAGCTACTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTTGTTTCTACAACGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTTTGGGAACACACGTTCGAGCTGGGACATTCGTGTCGCAGGCCGTCGAGGATGCGTTAATCAACTGCTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCGATCAAATGTTGGGTAGACGACCAAGCTACTCAAAAGGCCTTGGTTGGGGACCCAAGCCGAAGGTTCGCAGAACGGCGAGTGCAAGCAGTTCGTCGACATCTTGTTCGCAGTCCACAGAAAAATATATTGAATTACAAGCTAAACTTCATGAACCTTTGGAACGGATTGAAGTACAAGATAGAAATCACCAAGCATTAGCTTCACAAGTGGAAAGACCGAAGGTGTAA

Protein sequence

MRIDTSSTTIISVVHSRSNHGRTKLLDRSSLTIIVAGPSCFYNDSMSSLKEEGSRSIVWNCFGNTRSSWDIRVAGRRGCVNQLLELQSQPTPEGSQPLSEDEICDQMLGRRPSYSKGLGWGPKPKVRRTASASSSSTSCSQSTEKYIELQAKLHEPLERIEVQDRNHQALASQVERPKV
Homology
[Close]
BLAST of MELO3C032150.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 112.1 bits (279), Expect = 2.0e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MRIDTSSTTIISVVHSRSNHGRTKLLDRSSLTIIVAGPSCFYNDSMSSLKEEGSRSIVWN 60
          MRIDTSS TIIS VHSRSNH RT+LLDRSSLTIIVAGPS FYNDSMSSLKEEGSRSIVWN
Sbjct: 1  MRIDTSSATIISAVHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWN 60

Query: 61 C 62
          C
Sbjct: 61 C 61

[Close]
BLAST of MELO3C032150.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0 

Query: 1  MRIDTSSTTIISVVHSRSNHGRTKLLDRSSLTIIVAGPSCFYNDSMSSLKEEGSRSIVWN 60
          MRIDTSS TIIS VHSRSNH RT+LLDRSSLTIIVAGPS FYNDSMSSLKEEGSRSIVWN
Sbjct: 1  MRIDTSSATIISAVHSRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWN 60

Query: 61 C 62
          C
Sbjct: 61 C 61

The following BLAST results are available for this feature:
BLAST of MELO3C032150.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34241.12.0e-2191.80NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C032150.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032150.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032150.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCP2|E5GCP2_CUCME1.3e-2191.80NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032150.2.1MELO3C032150.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..179

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032150.2Cucumber (Chinese Long) v3cucmedB233
MELO3C032150.2Cucumber (Chinese Long) v3cucmedB248
MELO3C032150.2Watermelon (97103) v2medwmbB425
MELO3C032150.2Wax gourdmedwgoB538
MELO3C032150.2Cucumber (Gy14) v2cgybmedB217
MELO3C032150.2Cucumber (Gy14) v1cgymedB258
MELO3C032150.2Cucurbita maxima (Rimu)cmamedB150
MELO3C032150.2Cucurbita maxima (Rimu)cmamedB276
MELO3C032150.2Cucurbita moschata (Rifu)cmomedB138
MELO3C032150.2Cucurbita moschata (Rifu)cmomedB263
MELO3C032150.2Cucurbita pepo (Zucchini)cpemedB763
MELO3C032150.2Wild cucumber (PI 183967)cpimedB241
MELO3C032150.2Cucumber (Chinese Long) v2cumedB240
MELO3C032150.2Bottle gourd (USVL1VR-Ls)lsimedB389
MELO3C032150.2Watermelon (Charleston Gray)medwcgB418
MELO3C032150.2Watermelon (97103) v1medwmB455
MELO3C032150.2Silver-seed gourdcarmedB0379
MELO3C032150.2Silver-seed gourdcarmedB0447