MELO3C032148.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032148.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr06 : 23638054 .. 23638338 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTCGCCTAGGTTACCTCGCCCAGTTGGTACGCATGATGGTGGAGAAACTATCTGAATGTCAGGTTCAAGCAACGACTGTAATTGATTGTAGAATTAAGGTACTAAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGGCTAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGGGGAGAAAGAATTATTTGATAATTGGATTAGGATAAGGAAAATAATATAA

mRNA sequence

ATGGAGTTAGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTCGCCTAGGTTACCTCGCCCAGTTGGTACGCATGATGGTGGAGAAACTATCTGAATGTCAGGTTCAAGCAACGACTGTAATTGATTGTAGAATTAAGGTACTAAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGGCTAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGGGGAGAAAGAATTATTTGATAATTGGATTAGGATAAGGAAAATAATATAA

Coding sequence (CDS)

ATGGAGTTAGTGTCAATGGGGGGATGGAAATCGGATAATGGTACGTTTCGCCTAGGTTACCTCGCCCAGTTGGTACGCATGATGGTGGAGAAACTATCTGAATGTCAGGTTCAAGCAACGACTGTAATTGATTGTAGAATTAAGGTACTAAAGCAGACATTCCAGGCCATCGCCGAAATGCGGGGGCTAGCGTACAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGGGGAGAAAGAATTATTTGATAATTGGATTAGGATAAGGAAAATAATATAA

Protein sequence

MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEMRGLAYSGFGWNDEEKCIIGEKELFDNWIRIRKII

Homology

[Close]

BLAST of MELO3C032148.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           MELVSMGGWKSDNGTFR GYLAQLVRMM EKLS CQV+ATTVIDCRIK LK+TFQAIAEM
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
            G A SGFGWNDEEKCI+ EKELFDNW+R
Sbjct: 402 LGPACSGFGWNDEEKCIVAEKELFDNWVR 430

[Close]

BLAST of MELO3C032148.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 5.4e-26
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELVS GGW+SDNGTF+ GYLAQL RMM EKL    +Q ++ IDC +K LK+T+ AIAEM
Sbjct: 25  VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
           RG + SGFGWN+E +CII E++LFD+WI+
Sbjct: 85  RGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of MELO3C032148.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-24
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELV++GGW+SDNGTFR GYL QL RMM  K+    + A+T ID RIK++K+ F A+AEM
Sbjct: 21  VELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 80

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
           RG   SGFGWNDE+KCI+ EKE+FD+W++
Sbjct: 81  RGPNCSGFGWNDEKKCIVAEKEVFDDWVK 108

[Close]

BLAST of MELO3C032148.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELV+ GGW+SDNGTFR GYL QL RMM  K+    + A+T ID RIK++K+ F A+AEM
Sbjct: 380 VELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 439

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNW 88
           RG   SGFGWNDE+KCI+ EKE+FD+W
Sbjct: 440 RGPNCSGFGWNDEKKCIVAEKEVFDDW 465

[Close]

BLAST of MELO3C032148.2 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 45/89 (50.56%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +++ + G WK+DNGTF+ GYL QL +MM EK+ +C ++A   ID R+K+LK+ + AI+EM
Sbjct: 70  LDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQPHIDSRVKILKKQYHAISEM 129

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
            G A SGFGWND++KC++ EK++FD W++
Sbjct: 130 LGPAGSGFGWNDKDKCVVVEKDVFDEWVK 158

[Close]

BLAST of MELO3C032148.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           MELVSMGGWKSDNGTFR GYLAQLVRMM EKLS CQV+ATTVIDCRIK LK+TFQAIAEM
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
            G A SGFGWNDEEKCI+ EKELFDNW+R
Sbjct: 402 LGPACSGFGWNDEEKCIVAEKELFDNWVR 430

[Close]

BLAST of MELO3C032148.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-26
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELVS GGW+SDNGTF+ GYLAQL RMM EKL    +Q ++ IDC +K LK+T+ AIAEM
Sbjct: 25  VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
           RG + SGFGWN+E +CII E++LFD+WI+
Sbjct: 85  RGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

[Close]

BLAST of MELO3C032148.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELV++GGW+SDNGTFR GYL QL RMM  K+    + A+T ID RIK++K+ F A+AEM
Sbjct: 21  VELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 80

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNWIR 90
           RG   SGFGWNDE+KCI+ EKE+FD+W++
Sbjct: 81  RGPNCSGFGWNDEKKCIVAEKEVFDDWVK 108

[Close]

BLAST of MELO3C032148.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELV+ GGW+SDNGTFR GYL QL RMM  K+    + A+T ID RIK++K+ F A+AEM
Sbjct: 380 VELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 439

Query: 61  RGLAYSGFGWNDEEKCIIGEKELFDNW 88
           RG   SGFGWNDE+KCI+ EKE+FD+W
Sbjct: 440 RGPNCSGFGWNDEKKCIVAEKEVFDDW 465

[Close]

BLAST of MELO3C032148.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-21
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1   MELVSMGGWKSDNGTFRLGYLAQLVRMMVEKLSECQVQATTVIDCRIKVLKQTFQAIAEM 60
           +ELV+ GGW+SDNGTF  GYL QL RMM  K+  C + A+T ID RIK+LK+ F A+AEM
Sbjct: 21  VELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCNIHAST-IDSRIKLLKRMFHALAEM 80

Query: 61  RGLAYSGFGWNDEEKCIIGEKE 83
           RG   SGFGWNDE+KCI+ EKE
Sbjct: 81  RGPNCSGFGWNDEKKCIVAEKE 101

The following BLAST results are available for this feature:

BLAST of MELO3C032148.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33754.1	3.0e-37	86.52	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_008441954.1	5.4e-26	62.92	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]	[more]
XP_008466949.1	5.0e-24	60.67	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]
ADN34114.1	3.3e-23	62.07	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_024022021.1	1.8e-21	50.56	uncharacterized protein LOC112091787 [Morus notabilis]	[more]

BLAST of MELO3C032148.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032148.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032148.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GBB2\|E5GBB2_CUCME	2.0e-37	86.52	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3B4L3\|A0A1S3B4L3_CUCME	3.6e-26	62.92	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
tr\|A0A1S3CTN6\|A0A1S3CTN6_CUCME	3.3e-24	60.67	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
tr\|E5GCB5\|E5GCB5_CUCME	2.2e-23	62.07	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3C8Z4\|A0A1S3C8Z4_CUCME	2.6e-21	63.41	uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032148.2.1	MELO3C032148.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 4..89
None	No IPR available	PANTHER	PTHR31704:SF62	SUBFAMILY NOT NAMED	coord: 4..89

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032148.2	Cucumber (Gy14) v2	cgybmedB217
MELO3C032148.2	Cucumber (Gy14) v1	cgymedB258
MELO3C032148.2	Cucurbita maxima (Rimu)	cmamedB150
MELO3C032148.2	Cucurbita maxima (Rimu)	cmamedB276
MELO3C032148.2	Cucurbita moschata (Rifu)	cmomedB138
MELO3C032148.2	Cucurbita moschata (Rifu)	cmomedB263
MELO3C032148.2	Cucurbita pepo (Zucchini)	cpemedB763
MELO3C032148.2	Wild cucumber (PI 183967)	cpimedB241
MELO3C032148.2	Cucumber (Chinese Long) v2	cumedB240
MELO3C032148.2	Bottle gourd (USVL1VR-Ls)	lsimedB389
MELO3C032148.2	Watermelon (Charleston Gray)	medwcgB418
MELO3C032148.2	Watermelon (97103) v1	medwmB455
MELO3C032148.2	Silver-seed gourd	carmedB0379
MELO3C032148.2	Silver-seed gourd	carmedB0447
MELO3C032148.2	Cucumber (Chinese Long) v3	cucmedB233
MELO3C032148.2	Cucumber (Chinese Long) v3	cucmedB248
MELO3C032148.2	Watermelon (97103) v2	medwmbB425
MELO3C032148.2	Wax gourd	medwgoB538