MELO3C032106.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032106.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransmembrane protein, putative
Locationchr06 : 20699557 .. 20699898 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACAAACACTTCTTGCCGTCTTAATTGCGTTCACGTTGGCCCAGCGTCAGATGTTACTAACGTTGGAGCTACTAAAGAACGACAGTAGGTGTATCACGCATACACCGTCTGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGCCAGATCTTGTGTGTCCCCAAAGCACGCACATGGACAGGCAAACATTTGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTCGTCGATCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCTATGATGTGAAGAATCACGTCATTTAA

mRNA sequence

ATGGATCAACAAACACTTCTTGCCGTCTTAATTGCGTTCACGTTGGCCCAGCGTCAGATGTTACTAACGTTGGAGCTACTAAAGAACGACAGTAGGTGTATCACGCATACACCGTCTGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGCCAGATCTTGTGTGTCCCCAAAGCACGCACATGGACAGGCAAACATTTGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTCGTCGATCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCTATGATGTGAAGAATCACGTCATTTAA

Coding sequence (CDS)

ATGGATCAACAAACACTTCTTGCCGTCTTAATTGCGTTCACGTTGGCCCAGCGTCAGATGTTACTAACGTTGGAGCTACTAAAGAACGACAGTAGGTGTATCACGCATACACCGTCTGATACACGCCATAGAATAAGGCAGCTTGCATACTTTCGCATGATACACGAGCCAGATCTTGTGTGTCCCCAAAGCACGCACATGGACAGGCAAACATTTGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTCGTCGATCGAGATTGTTGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCTATGATGTGAAGAATCACGTCATTTAA

Protein sequence

MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLVCPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI
Homology
[Close]
BLAST of MELO3C032106.2 vs. NCBI nr
Match: XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           MDQQTLL VL AFTLAQRQ+LLTLELL ND+R IT+TP DT +RIRQLAYFRMIHE DLV
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           C QST MDR+TFAILCHLL+TVS LSSIEI+DVEEMVAMFLHVLA+DVKNHVI
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVI 113

[Close]
BLAST of MELO3C032106.2 vs. NCBI nr
Match: XP_008454692.1 (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           M +  L  ++  F  +QRQ+LLTLELLKND++ ITH P + RHRIRQLAYFRMIH  DLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           C QST MD++ FAILCHLL+T++ L+S E+VDVEEMVAM+LH+LA+DVKN VI
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVI 113

[Close]
BLAST of MELO3C032106.2 vs. NCBI nr
Match: XP_008463581.1 (PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 15  LAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLVCPQSTHMDRQTFAI 74
           + Q QMLL LE L ND++ +  TP +TRHRIRQLAYF+MIH+  LVC + T +DR+T  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 75  LCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           LC+LL+ V+GLS IEIVDVEEMVAMFL+VL ++VKN +I
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRII 99

[Close]
BLAST of MELO3C032106.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           MD+  L +++ AF  +QRQ+LL LELLKND++ ITH P +TRHRIRQLAYFRMIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIH----- 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
                               T++GL+S E+VDVEEMVAMFLH+LA+DVK+ VI
Sbjct: 61  -------------------GTIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVI 89

[Close]
BLAST of MELO3C032106.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 53  MIHEPDLVCPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHV 112
           MIHE DLVC QST MDR+TFAILCHLL+ V+GLSS EIVDVEEMVAMFLHVLA+DVKN V
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 I 114
           I
Sbjct: 61  I 61

[Close]
BLAST of MELO3C032106.2 vs. TrEMBL
Match: tr|A0A1S4DU32|A0A1S4DU32_CUCME (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-42
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           MDQQTLL VL AFTLAQRQ+LLTLELL ND+R IT+TP DT +RIRQLAYFRMIHE DLV
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           C QST MDR+TFAILCHLL+TVS LSSIEI+DVEEMVAMFLHVLA+DVKNHVI
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVI 113

[Close]
BLAST of MELO3C032106.2 vs. TrEMBL
Match: tr|A0A1S3BYR8|A0A1S3BYR8_CUCME (uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.3e-32
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           M +  L  ++  F  +QRQ+LLTLELLKND++ ITH P + RHRIRQLAYFRMIH  DLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           C QST MD++ FAILCHLL+T++ L+S E+VDVEEMVAM+LH+LA+DVKN VI
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVI 113

[Close]
BLAST of MELO3C032106.2 vs. TrEMBL
Match: tr|A0A1S3CL59|A0A1S3CL59_CUCME (uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = 0 

Query: 15  LAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLVCPQSTHMDRQTFAI 74
           + Q QMLL LE L ND++ +  TP +TRHRIRQLAYF+MIH+  LVC + T +DR+T  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 75  LCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
           LC+LL+ V+GLS IEIVDVEEMVAMFL+VL ++VKN +I
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRII 99

[Close]
BLAST of MELO3C032106.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-20
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 0 

Query: 1   MDQQTLLAVLIAFTLAQRQMLLTLELLKNDSRCITHTPSDTRHRIRQLAYFRMIHEPDLV 60
           MD+  L +++ AF  +QRQ+LL LELLKND++ ITH P +TRHRIRQLAYFRMIH     
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIH----- 60

Query: 61  CPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHVI 114
                               T++GL+S E+VDVEEMVAMFLH+LA+DVK+ VI
Sbjct: 61  -------------------GTIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVI 89

[Close]
BLAST of MELO3C032106.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 53  MIHEPDLVCPQSTHMDRQTFAILCHLLQTVSGLSSIEIVDVEEMVAMFLHVLAYDVKNHV 112
           MIHE DLVC QST MDR+TFAILCHLL+ V+GLSS EIVDVEEMVAMFLHVLA+DVKN V
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 I 114
           I
Sbjct: 61  I 61

The following BLAST results are available for this feature:
BLAST of MELO3C032106.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899496.18.4e-4284.07PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo][more]
XP_008454692.13.5e-3265.49PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo][more]
XP_008463581.12.1e-2462.63PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo][more]
ADN34114.16.9e-2053.10retrotransposon protein [Cucumis melo subsp. melo][more]
ADN33754.11.7e-1883.61retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C032106.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032106.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032106.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DU32|A0A1S4DU32_CUCME5.6e-4284.07uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=... [more]
tr|A0A1S3BYR8|A0A1S3BYR8_CUCME2.3e-3265.49uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=... [more]
tr|A0A1S3CL59|A0A1S3CL59_CUCME1.4e-2462.63uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME4.6e-2053.10Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GBB2|E5GBB2_CUCME1.1e-1883.61Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032106.2.1MELO3C032106.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032106.2Silver-seed gourdcarmedB0378
MELO3C032106.2Silver-seed gourdcarmedB0446
MELO3C032106.2Cucumber (Chinese Long) v3cucmedB233
MELO3C032106.2Watermelon (97103) v2medwmbB426
MELO3C032106.2Wax gourdmedwgoB561
MELO3C032106.2Cucumber (Gy14) v2cgybmedB204
MELO3C032106.2Cucurbita maxima (Rimu)cmamedB149
MELO3C032106.2Cucurbita maxima (Rimu)cmamedB275
MELO3C032106.2Cucurbita moschata (Rifu)cmomedB137
MELO3C032106.2Cucurbita moschata (Rifu)cmomedB262
MELO3C032106.2Cucurbita pepo (Zucchini)cpemedB695
MELO3C032106.2Cucurbita pepo (Zucchini)cpemedB762
MELO3C032106.2Wild cucumber (PI 183967)cpimedB247
MELO3C032106.2Bottle gourd (USVL1VR-Ls)lsimedB390
MELO3C032106.2Bottle gourd (USVL1VR-Ls)lsimedB463
MELO3C032106.2Watermelon (Charleston Gray)medwcgB419
MELO3C032106.2Watermelon (Charleston Gray)medwcgB421
MELO3C032106.2Watermelon (97103) v1medwmB450