MELO3C032068.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032068.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 17449241 .. 17450674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGATTGGACCAATTGGAGTTTGGAGCGTGGGATTTCCGACTTAAAAGAAATTATTGCAACCTTGATCTCGGGTAAGTTGCTCGAACAATCCTTGGACTTCATTCCATGAAGGTTAGGTTATTAATTGTTGTTCCTAACCATTTAGGACTTGCGACTTGAGAAGCGGGTGACCTTACTGTTAGAATTCGATTGAGTAAATCTCTAGGTAAGAGATTTCTACTACTAGCTCTACGACTAGAATCATGAGACCGCATGCATTCCTAGTTAAGCACTTGAGGACTAGACTGCATAATGATATGTTAATTAATGAGGTCATGATGTGACTGATGACGTGATTTGATATGATAGCATGGTTTAATGTGATGACGGCTAGTTATGGCTTTATGTTTGAATATTGTGATAAAATGTGATATGATGATTAGACTAATATGATTACGAGATGATGCCATGTTATATGTATGCTATGGTTAGGGTACCTGTTAGCTTAGCCTATTAGCGTCGTACTTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGCGTAGTCCGACGGGACTGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCAACGGGATCCTTGCAGCCCGATTATCTTAGCGTTTCCTCCAGGTTTACTACAGACCAGTATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTCTGTTCCTACGGGAGTGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTACCATTTTCAGAACTCTAATAGGAAGTTAACAGGCACCTAGTGGGACTAGTAATGGGTCTCTTACTGAGTATTTTATACTCACTCTCTCTATGTCATATTTTTCAGGTAGAGGCAGAGGTAAGGGTAAGGGCAAGCTTGCGAGTGACCAGAAGTGACCGTGGCGAGCCATAGGGATTTATGCTTCCGCTTTACACCCCGTTTAAACATTTAGTACTTGAGTTTTCATTTTTCTTTATTTACTATTTCGTTTCTTTAAAAGTAGATAGGGCCCGGTAGGATTTTAATATTTGTTTACATTTCGCACATTACCCTGATTTGGTTTTTAAATAAATAAATTTTGGAGGTTTTATTCATTTTAGCCAAACTTTATAACTTCAATTATGTTATTTACATTTAGTAATGACTTCGCCTCAGTATAAGGAGTTGGGTCATTACAATTTTGGCCTCGTTATTCTATAAAAGAGGCTACAATAACTTGTATTTCTATAAGTTATCAGCTTAAATCATATAAGGACCTCCGCCGCCAAAAGACACAGCAGCTAAGAAGTGAGAATGATAAAGAAGTTGCTACTTTTCCACCCCCTTCGTCGTTTAATAGGAAGTCATTAACCTCAAGGGTAGAGGTTGATCCAACCCATAAGAACCAACCTATCAAGGAGCCACTACGAAAGAAATGA

mRNA sequence

GCCGATTGGACCAATTGGAGTTTGGAGCGTGGGATTTCCGACTTAAAAGAAATTATTGCAACCTTGATCTCGGACCAGTATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTCTGTTCCTACGGGAGTGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTAGAGGCAGAGATAGGGCCCGTAATGACTTCGCCTCAGTATAAGGAGTTGGGTCATTACAATTTTGGCCTCCTTAAATCATATAAGGACCTCCGCCGCCAAAAGACACAGCAGCTAAGAAGTGAGAATGATAAAGAAGTTGCTACTTTTCCACCCCCTTCGTCGTTTAATAGGAAGTCATTAACCTCAAGGGTAGAGGTTGATCCAACCCATAAGAACCAACCTATCAAGGAGCCACTACGAAAGAAATGA

Coding sequence (CDS)

GCCGATTGGACCAATTGGAGTTTGGAGCGTGGGATTTCCGACTTAAAAGAAATTATTGCAACCTTGATCTCGGACCAGTATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTCTGTTCCTACGGGAGTGCATGTTGCACGTGTTCGAGAACGTGCCAGTTATTGGGTAGAGGCAGAGATAGGGCCCGTAATGACTTCGCCTCAGTATAAGGAGTTGGGTCATTACAATTTTGGCCTCCTTAAATCATATAAGGACCTCCGCCGCCAAAAGACACAGCAGCTAAGAAGTGAGAATGATAAAGAAGTTGCTACTTTTCCACCCCCTTCGTCGTTTAATAGGAAGTCATTAACCTCAAGGGTAGAGGTTGATCCAACCCATAAGAACCAACCTATCAAGGAGCCACTACGAAAGAAATGA

Protein sequence

ADWTNWSLERGISDLKEIIATLISDQYVLGAPSGHRRPDSVPTGVHVARVRERASYWVEAEIGPVMTSPQYKELGHYNFGLLKSYKDLRRQKTQQLRSENDKEVATFPPPSSFNRKSLTSRVEVDPTHKNQPIKEPLRKK

Homology

[Close]

BLAST of MELO3C032068.2 vs. NCBI nr
Match: ADN33999.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 7   SLERGISDLKEIIATLISDQYVLGAPSGHRRPDSVPTGVHVARVRERASYWVEAEI 63
           S E    D   + +   +DQYVLGAPS HRRPDSVP GVHVARVR+RASYWVE  +
Sbjct: 54  STESSQPDCLSVSSGFATDQYVLGAPSEHRRPDSVPMGVHVARVRKRASYWVEVGV 109

[Close]

BLAST of MELO3C032068.2 vs. TrEMBL
Match: tr|E5GC00|E5GC00_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 7   SLERGISDLKEIIATLISDQYVLGAPSGHRRPDSVPTGVHVARVRERASYWVEAEI 63
           S E    D   + +   +DQYVLGAPS HRRPDSVP GVHVARVR+RASYWVE  +
Sbjct: 54  STESSQPDCLSVSSGFATDQYVLGAPSEHRRPDSVPMGVHVARVRKRASYWVEVGV 109

The following BLAST results are available for this feature:

BLAST of MELO3C032068.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33999.1	2.1e-10	62.50	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C032068.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032068.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032068.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC00\|E5GC00_CUCME	1.4e-10	62.50	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032068.2.1	MELO3C032068.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..140

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032068.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032068.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032068.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032068.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032068.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032068.2	Watermelon (97103) v1	medwmB448
MELO3C032068.2	Silver-seed gourd	carmedB0489