MELO3C032067.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032067.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP-3 complex subunit sigma-like
Locationchr06 : 17413979 .. 17421657 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAACTTTTTCCTCTTTTTTCCCCCCAACTATCCATTTGTTTCCATATCTCTAAAAAGAACCTATCTATTTTCTCCCAGAAGTTTTCACTCTTCCCTGATTTTCTCCGATTTGAACGCTCCCCTTCTCGACCACAATTGTGTGAACAATCCCTTAAGACGGCCCGTCACCGAACGATCTCGCACCATGGACGTTCCACCGCGCACGGATGTTCACGTTCATGGAGACGCTCCACCCACATACATTCTCCACGACTGTAATGTCATGGAAGGCCGATATGAAGAAAGAAGTAGGTCTTTATGTTTAACTCCCACCAACTGTTTGTTGTTTGTTCTGCTTTTGGGTTCTCTTGTGTCTTACTGTGTAATTGGATTCCTGTTGTTGGATTGATTTGGGAATGTGGGTTTTGCAATGTGGTGATTTTTGTGTAAGGGGCGGGTTAATATGTTTCTATTTGATCTTTTTTGTTGACGTCATGAGGATATGTTCATGTAGTATCCTCATCATACTAACCGAACCAAGATTTATCAAGTGGGCATACCTTATCAATGTTTCGTTTAATGTGTGCATTAACAACTTTGACTAAATTGAAGTGTAATGTACATGATACTTCTTAAATTTGAACTTAATGACACTAATACTTTTCCTTCAAAATATAACATGTATATTGGAACGTCTAGGCACATGTATATTTTGGTTCCTCATGTTGGTGTTGTGAACTCTGAAACTTTTTATTTATTACTTTTGCCAGATTGAAGTTCTTAATCAGTGAGCATTTGGGTTTGCACACAGGTTGTAAAATGCCTTATAAATTTGATTCACAAGCACGGTGGCTGGATTGACAATGATGGATCCATCTTCTTGGCTTGTGATACAATCTTGAATGCTTCTGAAGGTACTTTAGTACGAAATTCTGTTTATATTGTTTCTTTAAGTTCTTGATTGGTTATCATTTAATTTACCGAAAAATTTTCCATTTTCGGTAAAATTTTTTCTCCACAATGTAACAAGTTTTTTGTTTATGCTTGCAAGATGTTTGATCATATGTCTCCAAAATCAAAGGTTAATTCATAAGGTGTTTTTGTTCTAATTTTCTGTTTTCTTTGAATGGGGGCTGAACTTCTCCTAGTTCAAATGACCAATATGAGTGATTTTTCAACACAATCAAACTTGTGCCATTGGTTTAGAAAATTTTGGTCTCCACAATGTAACAAGTTTTTTATGGAGTAAATTATTGCTAATTCATCGGTATTATGCATAAATTATTGCTAATTTATTTGGTTTGAACTTTGATGTTTCTTTCCTTCCAAGTAATGGAAATAAAAAGGAACAACTTCAGAATGATTCTAACTGGGTAGATGGTGACAACTTTAGTGTGTAATGTTCCCTTCCTTTCACTTGAGATACAAATCATTTAGCATATTGAAGAACAGAGTAAAATGGAGGAAAATGTGGTTATGTTATAAATCTCAAGTTTTCGCAGTTTTTGAAAACATTGGTTGAAACTAGATCATAAACCAAAAAGTTTAGAGGTGTAGTAAGTGTTCATAGGCCTAATTTTCAAAGGTAACTAAGTGAGGGCTCAAGAAATGTTCCTTTATGGTTTTTTCAATAGGGAGTCTAAAAAAAAAAACGAATCCTTCATCAGCTTGTGTTTTATAACTTGAAAGACCAGGGATGAGAAGCATATATTTTCTTTTGGGAATCATACAACTGAGATTTAGACAATTCTAATTCTGAAAGTAGTATTTCTCTGTATATGAGGTATAAAATAAAAATTCCAATGGCTTTTGCGTGCATGCTCATTATGTTTTTAAGGCTTCTCTTGTTCATATGCCCTCAACATATCTAGATGACCAAGCCTTTTCTAGTGTTCTAATTGCATCCGATATTTTCTCCTATTATCAATAATGACTCTGGGTGCTTGTAATCTGAAATCTGTTGGTGCATATCAGATATTTTCCTCAGGATGCTGTTGCACGCAGTTTTGCCAACTACCTCTTTGTTGGTCAATATTTCCTTCTTTTATATTTATTTTTGTGTACCATGTTTGTAGTTTTATTATTTTAGGCAGTAGTAAAGGGAAGTAATATTGCTCAGATACATCTTTGTAAGTAATATTGCTTATTCATCTTGGAAGTGGTAAAGGGAATAAATCTTTGATTTTACTGAATTGTTTCTTCTGTAGGGTTCTGTGCCATTGTTGGGTAAGTTTGATTTTACTGAATTGTTTATTCTCTTTGAATCCTCTGTTATTTGTTCTTTTGCCCCATTGTTGGGTAAGTTTCAACCTTCAATTCTTAATTATATGTTTTGTATTTTCAGTTCCTTTGATGTTTATGCTTTATTGCTTGGGATGTTTCATTAGCTTGTTTTCCTTTTGGTGTTTAATTTGGGCCTTAATAAATTAGTATGAACTATGTTTTAGAATTGTTCATTTATTGAGTTCGTGATTGTCTAATGCAGGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATGGAAAAGAGGTTGAGAGTTGCTTGCCTTCTTATGCAAATATCAATAATGTTGTGAAGGTAATTTAGATTTTATTTGTCTTTGTCTTGGATTAAAGACTATTTTTATGGTCAGTTTCTGACGGGCACCGTTTGGTCTATTAAAAAACAATGTAAAGTATTAAGGATCAGCTATGTTGATGATTCTGGTGGCCTGGAAGCAACTCTAGGCATTAAATTCATTGTGGTTGGAGAATACAAACTGTGATTTTATTTGTGTAGTATGATCAACTTATTTTTAATAGTTGTTAGTTGATTTCTCTGACTAAATAAGTTTTGAACATACTTTGTTGTTGTGATGTTATCTTCTTCTTGTAGATTGGCTCTGCTGTTGGTGGTAATTATTTTAGCTCATGAATTGAAGATAGAGGATGCGAATGCAAGTTTATTTGATGCCAAATTTCATCCAAAGTTATTGAATTTCAAGCTTCTTTAGTCAAGTTTGTATTTCTTGAACTAGAATTGTAGTCTTATGATTTTTGGAACAACATAGTTGGATCATTTTTGTAATTTTGGAATTATCATATTAGGTTGGGTAGATACAAGTACTGTTTTGTATATGACAATATCGAACAAATATGTAAAGTTTTTGAAATGTTGATACATATATGGTAAAATGTTAATATATGTTAAAGTTTTGGAATTGTCCTCGTGCATATTTATGTTCGATTTTTGAAACTATTTTTGGTGAATATCGTCATTTATATATATTTATGAAACCGTTGTTGGACCACTATACAGAACAATGAGAGCACAATGCAGAAACAAAACATTAATTTAATTACAATTTTAAAAAAATTCGGAACATGCTTGACAGTTTTAAAATGTCATAAAGAATTACATTCTTGACATTTCTAAAATGTCATTAAAGAGTATATTCTTGACGATTTTTCAATGTCATAAATAATCAATTTTTTTACGGTTATTAAATGTCATGAATATTGATATTCTTGACGGTTTTAAATTGTCACGAATACTCATACTCTTGACGGTTTTAAACTGTCATGAATACTCATACTCTTAACGGTTTTAAACTGTCAAGAGAATCTGTTTTTCGATGAATCAGCATCTGCATCTGGGGTGTTGTTTGCCTGAGATAGAAGATTGTATTAATCATAAATACAATAAGTGTTGAATACGTATTTATGACTGGAGGAACAACACTTCTACATTATTGTTACTGTATTGTCCTAGAACTGTTTCAACAGAACTCATACATGGTTTAACATGATTATCACAACTACTAAGAGGGTGGAACGACACTCCACCTTAATTGCAACACTAATCGATAATGTAACCAACTTCACTCCAATTGAATGGAGATTTTCTTCTATCAAATTTTTTTTCTTCAAAAAGGCACGCCCAAAGAACTTACTGTGATCAGTATTTATCCCTTGATTCACACCAATACGTAAAACCAACATAATAACTTCCCTAGGAGGTTACCAATATATAGGGTAAGGATCTTAACTACTTGTGGGCCATCTTTTAAGAGAATATCTTAACCAATATCTTGTAGTTCTGGTTTTCTAAGAGTGGATCAGAAGAGTCCATTCTCTTCATCAGGACTCCTTTTAGATGTTTCACCATGATCATCAATGATGACATTAATAGATTCCATAACTGTCCTGCTACTCTGATTGTATTCCCTGTAGGCACGGTTGTTGGTCGAGTACCCCAGAAATATTCCTCTATTTGATTTTGAGTCCCACTTTTGATGGTGATCCTTGTCACTTAAGATAAAACATGTGCTCCCAAAAATATGAAGTGTTTTACATTTGCTTTTCTCCCTTTACACAGTTCATATAAAGTGAAGGCTATCCCTGGTCGAAGACTTACACGGTTGTGTATATAACACGCAGTGTTTAATGCTTCAGCCTACAAGTAAATGGGTATATCTTTAGCGTGGAGCATTACAAATGACATTTCTTGTAGCGTTCGGTTCTTTTGTTCAACAACTCCATTCTAATGTGGTGTCGGTGGGGATGAAAACTCATGAAAAATTCGTTCATCCTCACAGAATTCGAAAAACCTTTTATTGTTAAACTCCCGACCATGATCACTTCGTGTGCGAGTAATACCTATATTCTTTTCTCTTTGAAGTTGTAAGCACAAGGTTTGACACACTTTGAATTGTCATGAATAAATTTTATCCAAGTATAGCGAGAGAAATCATCTACAAATACAAGTGCATACCTTTTTCCTCTCATGCTTTCTATTTGCATAGGTCCCATGAGATCTATATGGAGAAGTTCTAAAGTGCGAGTCGTAGAGGGCTGATGTGTGGGTTTTTGCAATGACTTGACTTGTTTCCCAGCAGGACAGTCTGAGCAGCGTTCCCGTGAGTCAAAGGTAAGGGGAAGTCCTATAATGGCTTCAACCTTTGCAGCTTTGGCTATGGATGTTCCATTGATGTGTCCCAATCGCTTGTGCCATAGACTTGCTTCCTCCGATTTTGACAGGTTGCACATATTCACCTTTGAATCCCAGTGATAACAGTTGTCTAACAACCTTGTTCCACTGAGGCATACTTTGTTTTGACTATCTATCACATTGCATCTATCTTTGCTAAAACTAACATGATATCCTTGATCGCATAGTTGGCTAATGCTGATCAAGTTTGCTGACAACCCCTGCACTAATTGGACATCGAGTAGATAAGGCAAGCCTGGGTGATTGATAGTACCCTTACCAATAATTCTTCCTTTCCCTCCGTCACCAAAGACTATTGATCCTGCATTGCATTCGTTAAGTTCTGAGAAAAATGCTGCATTTCTTATCATGTGCCATAAACAACCACTATCAAAATACCAGTCAGTGGAATTTGGATTATTAACAGATATAAGAGCTACCTTGAAGTTTTCTCGATTAGTTTTTAGTCACCATTCTGTCCTTCATCTGTTCATGTGTATGCTATGGCTAATGGATGTTGATGATACAGAAGGCTTTGCAGTCGAAAACAATATGGTTGAATATGACCACTCTTCCCACAAAAGTAACAAATCCATCGTTTTCGTCTATTCAGCACCTTCAATGGTGAAACTGCATCCTCCATGTTCATTTCTTTAGCATTTTTTGTCTCACTGTTCTGAGTGCTCGACTCTCATACAAAAATTATTTTTATCTAATTCCCTATAGCCTTCCATCCTGAAAAACCCAGACCTTTTCTATCAACGCATCTTTTTCCTTAATCAATCAGGTCATCTAATTTCTGAGCCCATTTGTCAGCATTCTCACAGATTTAGTTAGCTCCTTAATTGATTTCTGGCTTCCTTTAATTCAGCTTTTAGCGTGACTATTGAGGATAAGAAGCTTTAATTTTCTTCCATCAAGCATTGTATTCTAGCCTATTGGTGAACAATCGTAGCTTGATCTTCCTCTCACTTTCTTTTCAAGGTGCATTCATTGATAGACTCAATTAACATTGTTGCTTGCTTATCAGACGCTAAAGAGTTCACATTTTTTACTCCTTGTTCATTTATTGTGGAGACACTGATTAAAGCCATTCTAACTTCGTTATCATCACTTTCTGAGTAGTCTTCTTCATCTGAGAACGTAGCTACAAGACTCTTCTTTTTACGTTTGAGATAGGTTGCACATTCGGTTTGAATGTGTCCAAACCCTTCACATTCATGACATCTGATTCCTTTATTATTCTTCTTAAATTTTGACGTACCATAGTCCTTTTCTCCTCGTTCATAGTCTTTCCTTCTATATAGTCCTGATGAGGAAGAACTGGATATTCCTTGCTGAACTGTTGAGTTGGCTTCACGGCTGCTGCGTTGACTCCTAATATGTTTGTGTAACTGACTTTTGAGTTTTGCAACAGCTTTCTCAGTAACACCATGGATTCAACTAGAGAGTCATTATTTTGAGATACTTTGTGTTCTTCTATCAGTTCTTCCTTTACAGAGGTTAGAGCCAGACCAGGTTTCCTTCTGCTTTCACCATCTCCCAAGTGCAATTCAAAGGTACATAGTGACCCGAACAATTCATCCAACTTCATTTTTTATAGGCATTTGCCTTTTCAATTATAGTCACCTTCATATTGAACTTGGATGGAAGAGACCTAAGAACTTTCCGGACAAGTTTCGAATCAGACATCTTTTCTCCTAATGCATCTGATTCATTGGCAATGTCAAGTACTCGAACATTAAACTCAGCGATCGTCTCCTCTTTAGCCATTTGAAGTGCTTCGAAACGTGATGTCAAGATCTGCAGACGTGAGATTTTCACTTTTGAGGTTCGTTCAAAGGCCATTTCCAGGATATCCCATGCAGCCTTAGTCAACTTATAGGTGTTGATTAATTTGAATATGTTTTGATGAACAACATTAAACAAAGCATTCAACGCACGTGAGTTACCCACAAGTGCATCATCTTCTTTGCTTGTCAACTTCAATTCCAACTTTCGTATAACTTTACGGATTTCATCCTTTTCAATGGGGTGCTCCCATCTTGAGATAATTGCTCTCCAACTCCTTATGTCCAGTGACATAAGAAATGCCTCCATGTATGACTTTCAGTAACCATAATTTCCTGCATCTAGAAGGGGCGGCTAGTGGTTGAGTTACCTTCACGGATTTCATCCATTGATGATCGATTGATGACCAGCTCTAATACCAATTGAAATATGAACGGTTTCAGTGATATATAACAGTTGTATCGACAGTTGTACATAGAGTGCTAAACTATAGAAATGTGAAACATAACAATTAACACATCAGCATTTGTTAACCCAGTTCGATGAATGAGCATCTACATCTGGGGACTGTTTGTCCGAGATAGAAGATTGTATTAATCATAAATACAATAGGTGTTGAATACATAGTTACGACTGGAGGAACAACACTTCTACACTATTGTTACTGTACCGTCCTAGAACTGTTTCAACAGAACTCAAACATGGTTTAACATGATTATCATAACTACTAAGAGGGTGGAACGACACTCCCCCTTAATTGCAGCACTAATCGGTAATGTAATCAACTTCACTTCAATTGAATGGAGATTTTCTTCTATCAAATTTTTCTTTTTTTTTCTTCAAAAAGGCACGCCCAAAGAACTTACCGAGATCAATATTTATCCCTTGATTCATACCAGTATGTAA

mRNA sequence

AAAAAAAAAAACTTTTTCCTCTTTTTTCCCCCCAACTATCCATTTGTTTCCATATCTCTAAAAAGAACCTATCTATTTTCTCCCAGAAGTTTTCACTCTTCCCTGATTTTCTCCGATTTGAACGCTCCCCTTCTCGACCACAATTGTGTGAACAATCCCTTAAGACGGCCCGTCACCGAACGATCTCGCACCATGGACGTTCCACCGCGCACGGATGTTCACGTTCATGGAGACGCTCCACCCACATACATTCTCCACGACTGTAATGTCATGGAAGGCCGATATGAAGAAAGAAGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATGGAAAAGAGGTTGAGAGTTGCTTGCCTTCTTATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGCTGTTGGTGGCACGCCCAAAGAACTTACCGAGATCAATATTTATCCCTTGATTCATACCAGTATGTAA

Coding sequence (CDS)

ATGGACGTTCCACCGCGCACGGATGTTCACGTTCATGGAGACGCTCCACCCACATACATTCTCCACGACTGTAATGTCATGGAAGGCCGATATGAAGAAAGAAGATTACAAAAGAAATGCATATACAAAAGCAGATTTGCAATGCATGAATGCTATACAAAGCATGGAAAAGAGGTTGAGAGTTGCTTGCCTTCTTATGCAAATATCAATAATGTTGTGAAGATTGGCTCTGCTGTTGGTGGCACGCCCAAAGAACTTACCGAGATCAATATTTATCCCTTGATTCATACCAGTATGTAA

Protein sequence

MDVPPRTDVHVHGDAPPTYILHDCNVMEGRYEERRLQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGGTPKELTEINIYPLIHTSM
Homology
[Close]
BLAST of MELO3C032067.2 vs. NCBI nr
Match: XP_008465395.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 36  LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 82
           LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG
Sbjct: 63  LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 108

[Close]
BLAST of MELO3C032067.2 vs. NCBI nr
Match: XP_008465396.1 (PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 30/46 (65.22%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 36 LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 82
          LQKKCIYKSRFAMHECYTKHGKE                IGSAVGG
Sbjct: 63 LQKKCIYKSRFAMHECYTKHGKE----------------IGSAVGG 92

[Close]
BLAST of MELO3C032067.2 vs. TrEMBL
Match: tr|A0A1S3CQA2|A0A1S3CQA2_CUCME (uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 36  LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 82
           LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG
Sbjct: 63  LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 108

[Close]
BLAST of MELO3C032067.2 vs. TrEMBL
Match: tr|A0A1S3CNT1|A0A1S3CNT1_CUCME (uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503025 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 30/46 (65.22%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 36 LQKKCIYKSRFAMHECYTKHGKEVESCLPSYANINNVVKIGSAVGG 82
          LQKKCIYKSRFAMHECYTKHGKE                IGSAVGG
Sbjct: 63 LQKKCIYKSRFAMHECYTKHGKE----------------IGSAVGG 92

The following BLAST results are available for this feature:
BLAST of MELO3C032067.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465395.14.3e-18100.00PREDICTED: uncharacterized protein LOC103503025 isoform X1 [Cucumis melo][more]
XP_008465396.12.5e-0565.22PREDICTED: uncharacterized protein LOC103503025 isoform X2 [Cucumis melo][more]
BLAST of MELO3C032067.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032067.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032067.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CQA2|A0A1S3CQA2_CUCME2.9e-18100.00uncharacterized protein LOC103503025 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CNT1|A0A1S3CNT1_CUCME1.6e-0565.22uncharacterized protein LOC103503025 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032067.2.1MELO3C032067.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032067.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032067.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032067.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032067.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032067.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032067.2Watermelon (97103) v1medwmB448
MELO3C032067.2Silver-seed gourdcarmedB0489