MELO3C032054.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032054.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr06 : 16465404 .. 16465754 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCATTCTTCTTCCTTCCAAAATCCTTAGGCGCATTCCTCCGCCGCCCATAGCCGTTATCAAAAACAGAAACGGCAATGGCGACTGCACCGGCGGTGATGATACCAGCCGCCGTGGCAATGATGATTATGATGCTCATTCCAACTGCATGCGGCGGTGCTTTTACATTCTTTAAACCACTCAACAACCACACTTCTGGGGGTAAGTTTGTAATAAATTTGAAGTCTTTTCTTATTCAACAGAATACTTCTATAAATATTTAAAGGAGGGGATTCCTTTCCTTCAAATGCTTGGTATTTCAAAAAAAAAAAAAAAGAATTAAATTATTTGTACTTTTTAGATATGCTCTAG

mRNA sequence

CCTCATTCTTCTTCCTTCCAAAATCCTTAGGCGCATTCCTCCGCCGCCCATAGCCGTTATCAAAAACAGAAACGGCAATGGCGACTGCACCGGCGGTGATGATACCAGCCGCCGTGGCAATGATGATTATGATGCTCATTCCAACTGCATGCGGCGGTGCTTTTACATTCTTTAAACCACTCAACAACCACACTTCTGGGGAATACTTCTATAAATATTTAAAGGAGGGGATTCCTTTCCTTCAAATGCTTGATATGCTCTAG

Coding sequence (CDS)

ATGGCGACTGCACCGGCGGTGATGATACCAGCCGCCGTGGCAATGATGATTATGATGCTCATTCCAACTGCATGCGGCGGTGCTTTTACATTCTTTAAACCACTCAACAACCACACTTCTGGGGAATACTTCTATAAATATTTAAAGGAGGGGATTCCTTTCCTTCAAATGCTTGATATGCTCTAG

Protein sequence

MATAPAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGEYFYKYLKEGIPFLQMLDML
Homology
[Close]
BLAST of MELO3C032054.2 vs. NCBI nr
Match: XP_011651393.1 (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hypothetical protein Csa_3G298570 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1  MATAPAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGEYFYKYLKE 51
          MATAPA+MIPAA+AMM+MMLIPTACGGA T FKPLNNHTSG    KY+ E
Sbjct: 1  MATAPALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGG-LVKYMVE 49

[Close]
BLAST of MELO3C032054.2 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1  MATAPAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGEYFYKYLKE 51
          MATAPA+MIPAA+AMM+MMLIPTACGGA T FKPLNNHTSG    KY+ E
Sbjct: 1  MATAPALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGG-LVKYMVE 49

The following BLAST results are available for this feature:
BLAST of MELO3C032054.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651393.14.6e-1078.00PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hy... [more]
BLAST of MELO3C032054.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032054.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032054.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L711|A0A0A0L711_CUCSA3.0e-1078.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032054.2.1MELO3C032054.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032054.2Silver-seed gourdcarmedB0489
MELO3C032054.2Cucumber (Chinese Long) v3cucmedB247
MELO3C032054.2Watermelon (97103) v2medwmbB424
MELO3C032054.2Watermelon (97103) v2medwmbB437
MELO3C032054.2Wax gourdmedwgoB540
MELO3C032054.2Wax gourdmedwgoB546
MELO3C032054.2Cucumber (Gy14) v2cgybmedB216
MELO3C032054.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032054.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032054.2Cucurbita moschata (Rifu)cmomedB259
MELO3C032054.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032054.2Cucurbita moschata (Rifu)cmomedB483
MELO3C032054.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032054.2Cucurbita pepo (Zucchini)cpemedB692
MELO3C032054.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032054.2Wild cucumber (PI 183967)cpimedB240
MELO3C032054.2Cucumber (Chinese Long) v2cumedB239
MELO3C032054.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032054.2Bottle gourd (USVL1VR-Ls)lsimedB406
MELO3C032054.2Watermelon (Charleston Gray)medwcgB417
MELO3C032054.2Watermelon (Charleston Gray)medwcgB431
MELO3C032054.2Watermelon (97103) v1medwmB448
MELO3C032054.2Watermelon (97103) v1medwmB462