MELO3C032053.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032053.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmetal transporter Nramp1-like
Locationchr06 : 16393641 .. 16395367 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTGTTGTTATGTCGTGTTCAACTACTGCCTTGGAAGCAAAATTCGGCACAACCTTGGTACTAAATCACATATGTCAGTTGCTTCCCAAGGTTAACACAACTTCCCAACTCAAGCATGTCATTAGAAGAAATCTGGTCTTTAATGTCGGGTGGAAAAAATGAAAAATGGGCTTTAATGTCGTTTTTCAAAAGGCGAATGTTTAATGTCGGTTTTAAACCGACATAATGATAGAGCTTTAATGTCGGTTTAAAACCGACAATAAACACCCTGCTTTTTTAGAACTGACATTAAAGTCCATTTTTATTTTATTTTTATTTTTAATTTTGTAAAAATTCAACTTTCTCTCTCTTACTTTACTCTTTTCTCAAACCCTCCCCACACGATTTTTCATCTTTCTCAAATTTCTTTCACCCTTCTCAATCTCATCACTTTCTTCCCTCTTTTCTTCGACAGCTGCCGCCACCACCACCAGCATACATCAGTTTCCTCCATCCCCGTCGTCGTTTGTGTCTTGTCGTTGTGCTCGCCGTCGCCACCACTGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGTTTGCTCCTCTCGAGCGTTTAACATTTTGGAAATATTAGCGAACAAACATAAACAGTCAAGCCTTCTTTTCGAAGATCAACTCCCATCTCCATCTTTGTCACCGACTTTCGAGAAGGTTAGACCCATTTCTTCCTTCTAAAATCTGTATTTTTTTCTCTTTTTTTCTTCTTAATCGATCTCATACATTCTTTGGCCCTTTTCCAGCTTCCAATCTGCATCAACTTCCCCCTTCCTTCAAATGGGTACGATTTTCTATTTTATCTATATCTTATCCAGCTTGTGTAATCTGCTTGGAGATGATCCATTTGTATTTCCTTCAGCTTAATTTGAATGTTTTGTTTGATTTGAGTTACGTTGAAGCATCATCAGTGTAATTAATTTTATTTTTTTCAATTCAATTGGCGCGCAAGGTATAACGTATGGATATAGTTTGATTATACACGGACATAGTTTGATTATATATTTCTTGCACCTGTATTTTTAATTATTGTATTGCTAATAGAAGTATTCGAGCTACCTCTATTAAGGCGTGATTGATTTGCTCCAAATCTATTACGGATGATCATTCTATTCAAGAGTGTTAGATCATTGAATTCTATTCATTATTTCGTCCCAAATAGCGTAGGAGGATTCTAAAATGAGACGTTTGTGCTTTTGTATTGTCTTGTTCTCTTTATGGTCTTAGCTAATACTCCAGGCTGACGGGATTTATGGTCTTAGCTAATCCTCCTGGCTGACGAGCTACCTCTCTTGTCATACAAAATGAAAACGTTTATTTTTTTTATTTTTTTATTTTTGCATTCCCAAAATTAGTGATTGTATCTCTATAAATTCACCAACGGGTCTTCTTTAATGGAAAATGGGTTGTGTTTGTTTGTTTACTTGAGTATTCTTTGTAGCTAACCTTTTTGGATTTAACGAAACAAGGGAAAAATAAGAGGAACGATAAAATGGCTGTTGGAGGGTCTGGTTATGGGCAACCACAATTCCTTGTAAGGGTTGGGGATGAGAATTTTTCACATGCTCCGTTGATCGAGAACCTGAAATGTCACACCCCTTCCCGGACCACCTGCTGTCTTAGCCCGAAAGACAGTGTAAAGCCAACAAACATCGTCTCCTCTAACGATCCCTGTTGGCCCTACTGA

mRNA sequence

ATGTCGATTGTTGTTATGTCGTGTTCAACTACTGCCTTGGAAGCAAAATTCGGCACAACCTTGCTGCCGCCACCACCACCAGCATACATCAGTTTCCTCCATCCCCGTCGTCGTTTGTGTCTTGTCGTTGTGCTCGCCGTCGCCACCACTGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGTTTGCTCCTCTCGAGCGTTTAACATTTTGGAAATATTAGCGAACAAACATAAACAGTCAAGCCTTCTTTTCGAAGATCAACTCCCATCTCCATCTTTGTCACCGACTTTCGAGAAGCTAACCTTTTTGGATTTAACGAAACAAGGGAAAAATAAGAGGAACGATAAAATGGCTGTTGGAGGGTCTGGTTATGGGCAACCACAATTCCTTGTAAGGGTTGGGGATGAGAATTTTTCACATGCTCCGTTGATCGAGAACCTGAAATGTCACACCCCTTCCCGGACCACCTGCTGTCTTAGCCCGAAAGACAGTGTAAAGCCAACAAACATCGTCTCCTCTAACGATCCCTGTTGGCCCTACTGA

Coding sequence (CDS)

ATGTCGATTGTTGTTATGTCGTGTTCAACTACTGCCTTGGAAGCAAAATTCGGCACAACCTTGCTGCCGCCACCACCACCAGCATACATCAGTTTCCTCCATCCCCGTCGTCGTTTGTGTCTTGTCGTTGTGCTCGCCGTCGCCACCACTGTGCCCAGCCGTTGCATTTGCAAAATATTTATCGTTTGCTCCTCTCGAGCGTTTAACATTTTGGAAATATTAGCGAACAAACATAAACAGTCAAGCCTTCTTTTCGAAGATCAACTCCCATCTCCATCTTTGTCACCGACTTTCGAGAAGCTAACCTTTTTGGATTTAACGAAACAAGGGAAAAATAAGAGGAACGATAAAATGGCTGTTGGAGGGTCTGGTTATGGGCAACCACAATTCCTTGTAAGGGTTGGGGATGAGAATTTTTCACATGCTCCGTTGATCGAGAACCTGAAATGTCACACCCCTTCCCGGACCACCTGCTGTCTTAGCCCGAAAGACAGTGTAAAGCCAACAAACATCGTCTCCTCTAACGATCCCTGTTGGCCCTACTGA

Protein sequence

MSIVVMSCSTTALEAKFGTTLLPPPPPAYISFLHPRRRLCLVVVLAVATTVPSRCICKIFIVCSSRAFNILEILANKHKQSSLLFEDQLPSPSLSPTFEKLTFLDLTKQGKNKRNDKMAVGGSGYGQPQFLVRVGDENFSHAPLIENLKCHTPSRTTCCLSPKDSVKPTNIVSSNDPCWPY
Homology
[Close]
BLAST of MELO3C032053.2 vs. NCBI nr
Match: KGN58662.1 (hypothetical protein Csa_3G714870 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 108 KQGKNKRNDKMAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           K+G++KRN+KMA GGSG GQPQFLVR GDE+FSHAPLIEN
Sbjct: 21  KEGRHKRNNKMAAGGSGSGQPQFLVRAGDESFSHAPLIEN 60

[Close]
BLAST of MELO3C032053.2 vs. NCBI nr
Match: XP_008461761.2 (PREDICTED: metal transporter Nramp1-like [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           MA GGSG GQPQFLVR GDENFSHAPLIEN
Sbjct: 1   MAAGGSGSGQPQFLVRAGDENFSHAPLIEN 30

[Close]
BLAST of MELO3C032053.2 vs. NCBI nr
Match: XP_011651819.1 (PREDICTED: metal transporter Nramp6 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           MA GGSG GQPQFLVR GDE+FSHAPLIEN
Sbjct: 1   MAAGGSGSGQPQFLVRAGDESFSHAPLIEN 30

[Close]
BLAST of MELO3C032053.2 vs. NCBI nr
Match: XP_016900340.1 (PREDICTED: metal transporter Nramp1-like [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIENLK 150
           MA GGSG GQPQFLVR GDENFSHA LIEN K
Sbjct: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPK 32

[Close]
BLAST of MELO3C032053.2 vs. NCBI nr
Match: XP_008465154.2 (PREDICTED: metal transporter Nramp6 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           MA GGSG GQPQFLVR GD++FSHAPLIEN
Sbjct: 1   MAAGGSGSGQPQFLVRAGDDSFSHAPLIEN 30

[Close]
BLAST of MELO3C032053.2 vs. TrEMBL
Match: tr|A0A0A0LD68|A0A0A0LD68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G714870 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 108 KQGKNKRNDKMAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           K+G++KRN+KMA GGSG GQPQFLVR GDE+FSHAPLIEN
Sbjct: 21  KEGRHKRNNKMAAGGSGSGQPQFLVRAGDESFSHAPLIEN 60

[Close]
BLAST of MELO3C032053.2 vs. TrEMBL
Match: tr|A0A1S3CFX0|A0A1S3CFX0_CUCME (metal transporter Nramp1-like OS=Cucumis melo OX=3656 GN=LOC103500288 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           MA GGSG GQPQFLVR GDENFSHAPLIEN
Sbjct: 1   MAAGGSGSGQPQFLVRAGDENFSHAPLIEN 30

[Close]
BLAST of MELO3C032053.2 vs. TrEMBL
Match: tr|A0A1S4DX93|A0A1S4DX93_CUCME (metal transporter Nramp1-like OS=Cucumis melo OX=3656 GN=LOC107990868 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIENLK 150
           MA GGSG GQPQFLVR GDENFSHA LIEN K
Sbjct: 1   MAAGGSGSGQPQFLVRAGDENFSHALLIENPK 32

[Close]
BLAST of MELO3C032053.2 vs. TrEMBL
Match: tr|A0A1S3CN85|A0A1S3CN85_CUCME (metal transporter Nramp6 OS=Cucumis melo OX=3656 GN=LOC103502822 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 118 MAVGGSGYGQPQFLVRVGDENFSHAPLIEN 148
           MA GGSG GQPQFLVR GD++FSHAPLIEN
Sbjct: 1   MAAGGSGSGQPQFLVRAGDDSFSHAPLIEN 30

The following BLAST results are available for this feature:
BLAST of MELO3C032053.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58662.11.8e-0980.00hypothetical protein Csa_3G714870 [Cucumis sativus][more]
XP_008461761.27.0e-0690.00PREDICTED: metal transporter Nramp1-like [Cucumis melo][more]
XP_011651819.12.7e-0586.67PREDICTED: metal transporter Nramp6 [Cucumis sativus][more]
XP_016900340.14.5e-0584.38PREDICTED: metal transporter Nramp1-like [Cucumis melo][more]
XP_008465154.25.9e-0583.33PREDICTED: metal transporter Nramp6 [Cucumis melo][more]
BLAST of MELO3C032053.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032053.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032053.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LD68|A0A0A0LD68_CUCSA1.2e-0980.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G714870 PE=3 SV=1[more]
tr|A0A1S3CFX0|A0A1S3CFX0_CUCME4.6e-0690.00metal transporter Nramp1-like OS=Cucumis melo OX=3656 GN=LOC103500288 PE=4 SV=1[more]
tr|A0A1S4DX93|A0A1S4DX93_CUCME3.0e-0584.38metal transporter Nramp1-like OS=Cucumis melo OX=3656 GN=LOC107990868 PE=4 SV=1[more]
tr|A0A1S3CN85|A0A1S3CN85_CUCME3.9e-0583.33metal transporter Nramp6 OS=Cucumis melo OX=3656 GN=LOC103502822 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032053.2.1MELO3C032053.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032053.2Cucumber (Gy14) v2cgybmedB216
MELO3C032053.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032053.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032053.2Cucurbita moschata (Rifu)cmomedB259
MELO3C032053.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032053.2Cucurbita moschata (Rifu)cmomedB483
MELO3C032053.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032053.2Cucurbita pepo (Zucchini)cpemedB692
MELO3C032053.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032053.2Wild cucumber (PI 183967)cpimedB240
MELO3C032053.2Cucumber (Chinese Long) v2cumedB239
MELO3C032053.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032053.2Bottle gourd (USVL1VR-Ls)lsimedB406
MELO3C032053.2Watermelon (Charleston Gray)medwcgB417
MELO3C032053.2Watermelon (Charleston Gray)medwcgB431
MELO3C032053.2Watermelon (97103) v1medwmB448
MELO3C032053.2Watermelon (97103) v1medwmB462
MELO3C032053.2Silver-seed gourdcarmedB0489
MELO3C032053.2Cucumber (Chinese Long) v3cucmedB247
MELO3C032053.2Watermelon (97103) v2medwmbB424
MELO3C032053.2Watermelon (97103) v2medwmbB437
MELO3C032053.2Wax gourdmedwgoB540
MELO3C032053.2Wax gourdmedwgoB546