MELO3C032049.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032049.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 16167827 .. 16169042 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTAGAGCATCAGATGTTCACTACCTTTAAAGAGTTTCAGGTCGACTGTCACAGATACTTCAAAAAGTACAGCGACTCAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACATCATGGGGATTGGCTCTTCCTCTACGACCACTATATGAGTCGTGCATTCCAGGTACTTGTCATGATTAGTTATAATTTCAAGTTTTAATATGTATAAGAAATAAACAATATAATTTTTTCATGCAGAAGCAATCACGAACGAACAAGACTGCTAGACAGAAGTAGCCTTACAATCATAGTAGCAAGTTCAAGTCGTTTCTACAATGACAGTACGAGCTCACTGAGAGAAAAAGGGAATTGGTTGATTGTGTGAAGTGTTCAGAGAAACACACGTCGAGCTGGGACGTTCATGTCGCAGGCCGTAGATGATGCGCATGTAAGTTATGCCCTTATTAACTATCCTTTTTCATTATATATTTTTGCGTGTTACCTAACATAGTTTTTAAATTTATTGCAGAATCAAATGTTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTGTTGGATAGACAACCGGGCTACTCAAAAGGCCTTGGTTGGGACCCAAGTCGAAGACCCGCAGGACGACGAGTGCGAGCAGTTCCTCGACATCTTTTCTGCAATCCATACAAAGAGAGATAGAATTACAAGCTAAACTTAATGAAGCTTTGGAACGGATTGACGTGCAAGATAGAAATCACCAAGTATTAGTTTCACAAGTGGAATGAATGCAAAAGCTGATAGAAGACTTCACTCGTGCACAATAGGGACCACCACATGATCCCTAGCTCTGCGGTAGGTATATATATCTCCATTATTCTTAAGTTTTTGCAATGATAGTATACAGTGAACATATGAATATATGTACTAAACTTAGTTACTTTTATATCATTGTAGGACTGAAGGTGTAGAATGACGCGTACGCGCCTCGTTGGGAGACTTTTTATTATGTTTGCGTTTTTTTGTATTATGAGGACTACATTTTTTGTATTAAACTTACTATTATTTTTTGAACTTATTCGTATTATTAATTTTAATTTTTTTAATTTGTGTTTGTATTTCTTAATTTATTAATTTATATTGAATTGTTTTAATTTAATCTAAA

mRNA sequence

ATGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTAGAGCATCAGATGTTCACTACCTTTAAAGAGTTTCAGGTCGACTGTCACAGATACTTCAAAAAGTACAGCGACTCAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACATCATGGGGATTGGCTCTTCCTCTACGACCACTATATGAGTCGTGCATTCCAGAGAAACACACGTCGAGCTGGGACGTTCATGTCGCAGGCCGTAGATGATGCGCATAATCAAATGTTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTGTTGGATAGACAACCGGGCTACTCAAAAGGCCTTGGTTGGGACCCAAGTCGAAGACCCGCAGGACGACGAGTGCGAGCAGTTCCTCGACATCTTTTCTGCAATCCATACAAAGAGAGATAGAATTACAAGCTAAACTTAATGAAGCTTTGGAACGGATTGACGTGCAAGATAGAAATCACCAAGTATTAGTTTCACAAGTGGAATGAATGCAAAAGCTGATAGAAGACTTCACTCGTGCACAATAGGGACCACCACATGATCCCTAGCTCTGCGGACTGAAGGTGTAGAATGACGCGTACGCGCCTCGTTGGGAGACTTTTTATTATGTTTGCGTTTTTTTGTATTATGAGGACTACATTTTTTGTATTAAACTTACTATTATTTTTTGAACTTATTCGTATTATTAATTTTAATTTTTTTAATTTGTGTTTGTATTTCTTAATTTATTAATTTATATTGAATTGTTTTAATTTAATCTAAA

Coding sequence (CDS)

ATGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTAGAGCATCAGATGTTCACTACCTTTAAAGAGTTTCAGGTCGACTGTCACAGATACTTCAAAAAGTACAGCGACTCAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACATCATGGGGATTGGCTCTTCCTCTACGACCACTATATGAGTCGTGCATTCCAGAGAAACACACGTCGAGCTGGGACGTTCATGTCGCAGGCCGTAGATGATGCGCATAATCAAATGTTGGAACTCCAATCCCAGCCTACCCCAGAGGGTAGTCAGCCACTCTCTGAGGATGAGATATGCAATCAGGTGTTGGATAGACAACCGGGCTACTCAAAAGGCCTTGGTTGGGACCCAAGTCGAAGACCCGCAGGACGACGAGTGCGAGCAGTTCCTCGACATCTTTTCTGCAATCCATACAAAGAGAGATAG

Protein sequence

MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLYDHYMSRAFQRNTRRAGTFMSQAVDDAHNQMLELQSQPTPEGSQPLSEDEICNQVLDRQPGYSKGLGWDPSRRPAGRRVRAVPRHLFCNPYKER
Homology
[Close]
BLAST of MELO3C032049.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 96/158 (60.76%), Postives = 101/158 (63.92%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
           +LDFNDQAMNRFVEHQM TTFKEFQVDCHR+FKKYSD EEARANPPNALVG   DW FLY
Sbjct: 118 VLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLY 177

Query: 61  DHYMSRAFQ---------------------------------------------RNTR-R 113
           DHY+ RAFQ                                             R T  R
Sbjct: 178 DHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFRETHVR 237

[Close]
BLAST of MELO3C032049.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 8.5e-21
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
           +LDF+DQAMN  VE+QM  TFKEF  DCH+ FKKYSD EEARANPPN LVG + DW FLY
Sbjct: 131 VLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLY 190

Query: 61  DHYMSRAFQ 70
           DHYMS AFQ
Sbjct: 191 DHYMSHAFQ 199

[Close]
BLAST of MELO3C032049.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGD 56
           +LDFNDQA+NRFVEHQM TTFKEF  DCHR+FK      EARANPPN LVG H D
Sbjct: 127 VLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]
BLAST of MELO3C032049.2 vs. NCBI nr
Match: CAN64494.1 (hypothetical protein VITISV_018031 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-11
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 0 

Query: 1    MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
            ++DF    + + +E +M   +++ +  CH++FKKY     A+ NP    V     W +L 
Sbjct: 1107 IIDFTQDHVKKAIEGKMAARYRDHRNKCHKHFKKYPTIALAKQNPYKH-VSDQKQWDWLC 1166

Query: 61   DHYMSRAFQRNTRRAGTFMSQAVDDAHNQMLELQSQPTPEGSQPLSEDEICNQVLDRQPG 120
            D + S  FQ                   +MLELQ QP PEG Q L E EIC QVL  + G
Sbjct: 1167 DRFASEKFQ------------------EKMLELQKQPVPEGGQALKEAEICVQVLGSRSG 1216

Query: 121  YSKGLGWDP 130
            Y KGLG  P
Sbjct: 1227 YIKGLGHGP 1216

[Close]
BLAST of MELO3C032049.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 47/175 (26.86%), Postives = 79/175 (45.14%), Query Frame = 0 

Query: 2   LDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLYD 61
           +D + + +N+F+E QM  +FK+++ D H+Y+ ++ D  EARANPP  L     DW  L D
Sbjct: 23  VDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNPE-DWNHLCD 82

Query: 62  HYMSRAFQRNTR-------------RAGT------------------------------- 121
            + +  ++  T+             RAG+                               
Sbjct: 83  RWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQLQHELKIKEGSDIGPVDLFGESHYNE 142

Query: 122 ---FMSQAVDDAHNQMLELQSQPTPEGSQPLSEDEICNQVLDRQPGYSKGLGWDP 130
               ++   +DA+  M  L   PT EG +P+++ E C +VL  +P + KGLG+ P
Sbjct: 143 KDGLVNDNAEDAYENMQNLIKAPTQEGCEPVTQPEACRKVLGDRPDHVKGLGYGP 196

[Close]
BLAST of MELO3C032049.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 96/158 (60.76%), Postives = 101/158 (63.92%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
           +LDFNDQAMNRFVEHQM TTFKEFQVDCHR+FKKYSD EEARANPPNALVG   DW FLY
Sbjct: 118 VLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLY 177

Query: 61  DHYMSRAFQ---------------------------------------------RNTR-R 113
           DHY+ RAFQ                                             R T  R
Sbjct: 178 DHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELFRETHVR 237

[Close]
BLAST of MELO3C032049.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.6e-21
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
           +LDF+DQAMN  VE+QM  TFKEF  DCH+ FKKYSD EEARANPPN LVG + DW FLY
Sbjct: 131 VLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNEDWHFLY 190

Query: 61  DHYMSRAFQ 70
           DHYMS AFQ
Sbjct: 191 DHYMSHAFQ 199

[Close]
BLAST of MELO3C032049.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1   MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGD 56
           +LDFNDQA+NRFVEHQM TTFKEF  DCHR+FK      EARANPPN LVG H D
Sbjct: 127 VLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]
BLAST of MELO3C032049.2 vs. TrEMBL
Match: tr|A5AEV7|A5AEV7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 0 

Query: 1    MLDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLY 60
            ++DF    + + +E +M   +++ +  CH++FKKY     A+ NP    V     W +L 
Sbjct: 1107 IIDFTQDHVKKAIEGKMAARYRDHRNKCHKHFKKYPTIALAKQNPYKH-VSDQKQWDWLC 1166

Query: 61   DHYMSRAFQRNTRRAGTFMSQAVDDAHNQMLELQSQPTPEGSQPLSEDEICNQVLDRQPG 120
            D + S  FQ                   +MLELQ QP PEG Q L E EIC QVL  + G
Sbjct: 1167 DRFASEKFQ------------------EKMLELQKQPVPEGGQALKEAEICVQVLGSRSG 1216

Query: 121  YSKGLGWDP 130
            Y KGLG  P
Sbjct: 1227 YIKGLGHGP 1216

[Close]
BLAST of MELO3C032049.2 vs. TrEMBL
Match: tr|B8A7V1|B8A7V1_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_01836 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.4e-09
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 0 

Query: 2   LDFNDQAMNRFVEHQMFTTFKEFQVDCHRYFKKYSDSEEARANPPNALVGHHGDWLFLYD 61
           LD N++ +   VE    +++K F+  C+ ++ K+   E AR NP  AL  H  DW +L D
Sbjct: 356 LDLNEENVKGCVELMFSSSYKSFRHRCYEHYVKHGGGENARMNPHKALEDHLADWFWLCD 415

Query: 62  HYMSRAFQ---------RNTRRAGTFMSQAVDDAHNQMLELQSQPTPEGSQPLSEDEICN 121
           H+ +  FQ                 + S    + H+QM+ +Q +   +   PL E +IC 
Sbjct: 416 HFETEEFQGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLIELQICE 475

Query: 122 QVLDRQPGYSKG 125
           +VL +  GY +G
Sbjct: 476 KVLGKTYGYIRG 487

The following BLAST results are available for this feature:
BLAST of MELO3C032049.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34071.11.6e-4060.76CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901155.18.5e-2173.91PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_016901035.11.9e-1272.73PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
CAN64494.14.7e-1135.66hypothetical protein VITISV_018031 [Vitis vinifera][more]
XP_022156286.13.9e-1026.86uncharacterized protein LOC111023212 [Momordica charantia][more]
BLAST of MELO3C032049.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032049.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032049.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME1.1e-4060.76CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME5.6e-2173.91LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.3e-1272.73uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A5AEV7|A5AEV7_VITVI3.1e-1135.66Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1[more]
tr|B8A7V1|B8A7V1_ORYSI6.4e-0929.55Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_01836 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032049.2.1MELO3C032049.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032049.2Watermelon (97103) v2medwmbB424
MELO3C032049.2Wax gourdmedwgoB541
MELO3C032049.2Wax gourdmedwgoB546
MELO3C032049.2Cucumber (Gy14) v2cgybmedB216
MELO3C032049.2Cucumber (Gy14) v1cgymedB606
MELO3C032049.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032049.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032049.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032049.2Cucurbita moschata (Rifu)cmomedB483
MELO3C032049.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032049.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032049.2Wild cucumber (PI 183967)cpimedB240
MELO3C032049.2Cucumber (Chinese Long) v2cumedB239
MELO3C032049.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032049.2Watermelon (Charleston Gray)medwcgB417
MELO3C032049.2Watermelon (97103) v1medwmB448
MELO3C032049.2Silver-seed gourdcarmedB0521
MELO3C032049.2Silver-seed gourdcarmedB0771
MELO3C032049.2Cucumber (Chinese Long) v3cucmedB247