MELO3C032040.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032040.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 15089064 .. 15089618 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

mRNA sequence

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

Coding sequence (CDS)

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

Protein sequence

MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDFNFFDSILSRKRREKGKSIMNIYDKNQRKSLRRKVSFSSPQSLHSYSSHKESRKQSKLNSPQEDQ

Homology

[Close]

BLAST of MELO3C032040.2 vs. NCBI nr
Match: KGN61118.1 (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 16 SGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGATRDFDEFNFFLETF 75
          S FVPA I+I DD G    IQIV   + +WL+ERN R HG F+S AT  F EFN   + F
Sbjct: 6  SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 76 RFIEFHAIPSKN 88
           FI    +P K+
Sbjct: 66 TFIGSEGLPPKH 77

[Close]

BLAST of MELO3C032040.2 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-07
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           + +L+E  ++VK NYSGF+PA I++ D   + +IIQ++   + +W + RN  IHGTF   
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTRE 312

Query: 61  ATRDFDEFNFFLETFRFIEFHAI-PSKNLGE-------KFQGNFTNIINAIE-------A 120
           A R FDEFN   E + F    AI P K +         K +GN   + N  +        
Sbjct: 313 AARRFDEFNLNSEQYFFEGNLAISPEKAVSMVIGKEDWKKKGNGPLLENNKKLGAMMDFL 372

Query: 121 NHTKTKDYNSSCSDFNFFDSILSRKRREKGKSIM---NIYDKNQRKSLRRKVSFSSPQS- 180
           N+    D +S        D  LS   ++ GK      N     Q++  +RKVSF +P+S 
Sbjct: 373 NYDGDSD-SSEKRKMEIVDEELSVISQKGGKLFYKGENSKSAGQKRG-KRKVSFDTPKSK 432

Query: 181 LHSYSSHKESRKQSKLNSPQE 183
              Y      +   K+NSP E
Sbjct: 433 TFLYDRKSAPQTHYKINSPLE 451

[Close]

BLAST of MELO3C032040.2 vs. TrEMBL
Match: tr|A0A0A0LH82|A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 16 SGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGATRDFDEFNFFLETF 75
          S FVPA I+I DD G    IQIV   + +WL+ERN R HG F+S AT  F EFN   + F
Sbjct: 6  SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 76 RFIEFHAIPSKN 88
           FI    +P K+
Sbjct: 66 TFIGSEGLPPKH 77

[Close]

BLAST of MELO3C032040.2 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           + +L+E  ++VK NYSGF+PA I++ D   + +IIQ++   + +W + RN  IHGTF   
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTRE 312

Query: 61  ATRDFDEFNFFLETFRFIEFHAI-PSKNLGE-------KFQGNFTNIINAIE-------A 120
           A R FDEFN   E + F    AI P K +         K +GN   + N  +        
Sbjct: 313 AARRFDEFNLNSEQYFFEGNLAISPEKAVSMVIGKEDWKKKGNGPLLENNKKLGAMMDFL 372

Query: 121 NHTKTKDYNSSCSDFNFFDSILSRKRREKGKSIM---NIYDKNQRKSLRRKVSFSSPQS- 180
           N+    D +S        D  LS   ++ GK      N     Q++  +RKVSF +P+S 
Sbjct: 373 NYDGDSD-SSEKRKMEIVDEELSVISQKGGKLFYKGENSKSAGQKRG-KRKVSFDTPKSK 432

Query: 181 LHSYSSHKESRKQSKLNSPQE 183
              Y      +   K+NSP E
Sbjct: 433 TFLYDRKSAPQTHYKINSPLE 451

The following BLAST results are available for this feature:

BLAST of MELO3C032040.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61118.1	2.0e-08	48.61	hypothetical protein Csa_2G055060 [Cucumis sativus]	[more]
ADN33672.1	2.9e-07	31.84	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C032040.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032040.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032040.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH82\|A0A0A0LH82_CUCSA	1.3e-08	48.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1	[more]
tr\|E5GB30\|E5GB30_CUCME	1.9e-07	31.84	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032040.2.1	MELO3C032040.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..184

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032040.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C032040.2	Cucumber (Gy14) v1	cgymedB338
MELO3C032040.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032040.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032040.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032040.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032040.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032040.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032040.2	Wild cucumber (PI 183967)	cpimedB240
MELO3C032040.2	Cucumber (Chinese Long) v2	cumedB239
MELO3C032040.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032040.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032040.2	Watermelon (97103) v1	medwmB448
MELO3C032040.2	Silver-seed gourd	carmedB0771
MELO3C032040.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C032040.2	Watermelon (97103) v2	medwmbB424