MELO3C032033.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032033.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	GPI-anchored adhesin-like protein
Location	chr06 : 15039220 .. 15041816 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTGGTAAGTATCATATATCTATGATAACTTTTAAACGTCATTAAATATAAGTAATAAAATTATAAGTAATTATTTTAAGTTAAATAAAAAGAAAGAAAAAAAAAGAGAAGGAATTGGAGGAGTCTTCTCTGTGAAGGGTCCCTCTTCTCACTCACCGACCTCCCTTCACGCCGCAATCTCTCTCTATCTCTCCACCACCAACATCGACGATTACTGCAAGTGAGAGCCGAACAGCCAAACACACCGTCACTAGCTCTCGTCGCGCAGGATCAAAGTTGCTTGTTGATCTATGTGGTACTTCGTCCCTTCTCCGATTAGCCACTCTCTTCTAAGTGAAAATTGCCACCACTCTTGGCTATTGGATTTTGTTTGTCGTGCACATTGCCGCTTGGCTCAAAGTCACGCTACCTGATCCAAAGTCGTAGAGCCCAGATCCTGCCACTTGGAACTCAGGCCTATATTGAGCTATTTGTCCTTCCTATTCATGTGTCTATTGAGCCTTCGATGTGCTAATAAGCATTAGACCTCTGCTGTATTTTCCAGTAGGTTGTTGCTGAAAGTGTTATTCTTGAGTTTGGGGTAAGATTTTATTGTTTTTGTTGGGATTCTGGTAGATTTTGGAACACCCATTAAATTTGGACTTAAATTTAACAATACCCATCATGTTTAGGTAATAAAATTGCGTTCTAGGAAGCTATTGTCTAGCCGAGGGAGAGTGATTTTTTTGGCGTTTTGGCACACTCTAGGTAAGATTCTAACCTTTTATAGAGTGGGTGTTGTGTATCTAATTATGTTAGTGCTAATATTGAACAACCTATGGTTTTGGATGCTAGGATTTGAAAGTTGAAGGTAATTAGAGCATTAATTGTCCATTGTTAAGGCTACTTTACTAAGTTCTTGGTAAAGTTTAAAGTGTTTTTATTCAGTTTTCTTAGAGTTCTTAAATGCTCATTAAATTTAAGCATTAAGATAAAACTACCCATGCTACTCGGGTTCTAGAGTTGAATGTTAAAGATTGAAATGGGCTTTCCTTTAACTTTGGAGTTTCACTTGGGTGCTACTTTTATAAGGTTCAAAACATAAATTGGTTTAGGTGATATGAAAAAGTGCTTAATTAGGTTGTTTGTTTTAATGTTTTTTGTTTCTTGTTGATAGAATGGATATAAATCCAGAAAAATCATCAATCTTAGGAAGTGCTTAAGATTGTTTGCTTGCTCAAGTGAGACATTGTTTTTCTCTCTCATCTACTCAGACCATTCCTTGAACTCGATCTCAGCGATTCACATAAGCTGATGAATCCGTATAAGCAACCCAAAATAAGTTGGCATCTTTATTTATTTATTTTCTATATGTTATTTTCTTAATTTTCTGCTTCGAATTTACTTGTGGATCTACTTTCTTTAACTAGTTCATTTGTCTGTGTTTTTTTTTAGCTATTTTCATGCTATTTTGATCAAGGGTTTTGGCTTGTCCAGTCCTTATTGATATTCTGATTGTTGGTTTGTTTCTTGCATTGGCTCTTTTGAGTTCTTGATTTCTCTATTAGAATGTCGACGCATTGACTTGTTTTCTTTTTGCACTGGACTTGATAGTGGTTGTGAAAAATTATTTTTTATGATATAATTGAATAATAATTTCAACCTGTTTTGAGTCGGTTGATGGAATTTCGTAAAATAAAATGAGATTGCCATGTTTTGTATGACTAACGACGTACCTGATGATTTGTGCCTGTTTCTAGCTTCTGAGTATAATCACTACCCAGATGGCTAAATGAAGATTATATTAGATTCAATAGACAAACCGAAAACTACATGTCATTAGTTAGTTATGCAGTTTAGAAGAGCCAATAGGCAATAATCTAAATCAACGTCTTTTAAGCAAATTGAATTTAATGATTTTTGGATACTTGGTAGCAAATTAAATTTAATTGATTTAAAAAACGCATATTTTCTTTATAATATGTGTTATTTTCAGAAACACACCTTGACCGTTTAGATTAAGTACTACAATCTTTATTTATTAATTTTACCTTTTCTCTTCCCTTTTGGGCAGTTGTGAGTTGTTTGTTTCTAGCCATGGTAACATTAAGAAACTAGCATCAGGTTTAGTGAAGCCTTTTGTAACTCAACTACAGGTTTCACTACTACAAAAACAACATTTCAAGGTGTGTTCTATGTTGTTCCTGAGATGTTCTAATTTCATCCACGTTCATGACATAGTCCTTACTTAATGTAGGTTCTAATAAAGGTGTGTTCAATGATATAGTCCCGACTTTTGAGAATCTAATGCCACCTAAGGTCCTTGATTAGGTAAGGGTAGAATCCATAGCAGCTTATCAAGTACCTTGGCAGATGGTGTAGATAACTTTGGTTCTATTGGTGTGACTACAAATTAAGGTTAGAAAAATGAGATGTTTGATGACTTTGATGAAGATCTTGATCATGTTTTATTGATAGAGTGACTAAGCTATGTCACTAATTCCTATCTTGCATAGTGGCCTTATCGTGTAGGCCCTATTTGTTTTTCGCCTAACTTGTGCTTAATGAAGCGCACTACTGCTCTTGGTTACGTCACTAAAGTTTCGAGCTGA

mRNA sequence

ATGGCATTTGAAAGAAAAAAAAAGAGAAGGAATTGGAGGAGTCTTCTCTGTGAAGGGTCCCTCTTCTCACTCACCGACCTCCCTTCACGCCGCAATCTCTCTCTATCTCTCCACCACCAACATCGACGATTACTGCAAGTGAGAGCCGAACAGCCAAACACACCGTCACTAGCTCTCGTCGCGCAGGATCAAAGTTGCTTGTTGATCTATGTGGTTGTTGCTGAAAGTGTTATTCTTGAGTTTGGGAATGGATATAAATCCAGAAAAATCATCAATCTTAGGAAGTGCTTAAGATTGTTTGCTTGCTCAAGTGAGACATTTTGTGAGTTGTTTGTTTCTAGCCATGGTAACATTAAGAAACTAGCATCAGGTTTAGTGAAGCCTTTTGTAACTCAACTACAGGTTTCACTACTACAAAAACAACATTTCAAGTGGCCTTATCGTGTAGGCCCTATTTGTTTTTCGCCTAACTTGTGCTTAATGAAGCGCACTACTGCTCTTGGTTACGTCACTAAAGTTTCGAGCTGA

Coding sequence (CDS)

ATGGCATTTGAAAGAAAAAAAAAGAGAAGGAATTGGAGGAGTCTTCTCTGTGAAGGGTCCCTCTTCTCACTCACCGACCTCCCTTCACGCCGCAATCTCTCTCTATCTCTCCACCACCAACATCGACGATTACTGCAAGTGAGAGCCGAACAGCCAAACACACCGTCACTAGCTCTCGTCGCGCAGGATCAAAGTTGCTTGTTGATCTATGTGGTTGTTGCTGAAAGTGTTATTCTTGAGTTTGGGAATGGATATAAATCCAGAAAAATCATCAATCTTAGGAAGTGCTTAAGATTGTTTGCTTGCTCAAGTGAGACATTTTGTGAGTTGTTTGTTTCTAGCCATGGTAACATTAAGAAACTAGCATCAGGTTTAGTGAAGCCTTTTGTAACTCAACTACAGGTTTCACTACTACAAAAACAACATTTCAAGTGGCCTTATCGTGTAGGCCCTATTTGTTTTTCGCCTAACTTGTGCTTAATGAAGCGCACTACTGCTCTTGGTTACGTCACTAAAGTTTCGAGCTGA

Protein sequence

MAFERKKKRRNWRSLLCEGSLFSLTDLPSRRNLSLSLHHQHRRLLQVRAEQPNTPSLALVAQDQSCLLIYVVVAESVILEFGNGYKSRKIINLRKCLRLFACSSETFCELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQHFKWPYRVGPICFSPNLCLMKRTTALGYVTKVSS

Homology

[Close]

BLAST of MELO3C032033.2 vs. NCBI nr
Match: XP_004141819.1 (PREDICTED: uncharacterized protein LOC101213033 [Cucumis sativus] >KGN45462.1 hypothetical protein Csa_7G448730 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQH 143
           CELFVSSHGN +KLASG VKPFVTQL+V+  Q  H
Sbjct: 21  CELFVSSHGNTEKLASGSVKPFVTQLKVAEEQFAH 55

[Close]

BLAST of MELO3C032033.2 vs. NCBI nr
Match: XP_008462266.1 (PREDICTED: uncharacterized protein LOC103500666 [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQH 143
           CELFVSSHGN +KLASG VKPFVTQL+V+  Q  H
Sbjct: 21  CELFVSSHGNTEKLASGSVKPFVTQLKVAEEQFAH 55

[Close]

BLAST of MELO3C032033.2 vs. NCBI nr
Match: XP_022152443.1 (uncharacterized protein LOC111020172 [Momordica charantia] >XP_022152450.1 uncharacterized protein LOC111020172 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 8.2e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQH 143
           CELFVSSHGN +KLASG VKPFVTQL+V+  Q  H
Sbjct: 21  CELFVSSHGNSEKLASGSVKPFVTQLKVAEEQFAH 55

[Close]

BLAST of MELO3C032033.2 vs. TAIR10
Match: AT3G14172.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVS 137
           CELFVS+ GN +KLASGLVKPFV  L+V+
Sbjct: 21  CELFVSTTGNTEKLASGLVKPFVAHLKVA 49

[Close]

BLAST of MELO3C032033.2 vs. TrEMBL
Match: tr|A0A1S3CI28|A0A1S3CI28_CUCME (uncharacterized protein LOC103500666 OS=Cucumis melo OX=3656 GN=LOC103500666 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQH 143
           CELFVSSHGN +KLASG VKPFVTQL+V+  Q  H
Sbjct: 21  CELFVSSHGNTEKLASGSVKPFVTQLKVAEEQFAH 55

[Close]

BLAST of MELO3C032033.2 vs. TrEMBL
Match: tr|A0A0A0KAR0|A0A0A0KAR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448730 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 108 CELFVSSHGNIKKLASGLVKPFVTQLQVSLLQKQH 143
           CELFVSSHGN +KLASG VKPFVTQL+V+  Q  H
Sbjct: 21  CELFVSSHGNTEKLASGSVKPFVTQLKVAEEQFAH 55

The following BLAST results are available for this feature:

BLAST of MELO3C032033.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141819.1	6.3e-04	74.29	PREDICTED: uncharacterized protein LOC101213033 [Cucumis sativus] >KGN45462.1 hy...	[more]
XP_008462266.1	6.3e-04	74.29	PREDICTED: uncharacterized protein LOC103500666 [Cucumis melo]	[more]
XP_022152443.1	8.2e-04	74.29	uncharacterized protein LOC111020172 [Momordica charantia] >XP_022152450.1 uncha...	[more]

BLAST of MELO3C032033.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14172.1	2.4e-05	72.41	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of MELO3C032033.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032033.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI28\|A0A1S3CI28_CUCME	4.2e-04	74.29	uncharacterized protein LOC103500666 OS=Cucumis melo OX=3656 GN=LOC103500666 PE=...	[more]
tr\|A0A0A0KAR0\|A0A0A0KAR0_CUCSA	4.2e-04	74.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448730 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032033.2.1	MELO3C032033.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032033.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C032033.2	Cucumber (Gy14) v1	cgymedB338
MELO3C032033.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032033.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032033.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032033.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032033.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032033.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032033.2	Wild cucumber (PI 183967)	cpimedB240
MELO3C032033.2	Cucumber (Chinese Long) v2	cumedB239
MELO3C032033.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032033.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032033.2	Watermelon (97103) v1	medwmB448
MELO3C032033.2	Silver-seed gourd	carmedB0771
MELO3C032033.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C032033.2	Watermelon (97103) v2	medwmbB424