MELO3C032031.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032031.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRNA polymerase II transcriptional coactivator KELP
Locationchr06 : 15002486 .. 15003403 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGGTTATTTGTTCATCCTTTTTGAGGATATGTCTGGAACAAATTTCAAAATTGAGAAAGGAAAGAAAAATAAAACTTTCACTAGAAGAAATTTGGCCTTTAATGTCGGGTGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAACCAAATTTCCTTTGCAATTCTTTGCAATCTTCCGTCTCTCGACCTCTCCAAATTTCCTTACAAGTCTCTCATTCGCACCGTTTTTTAATCATTTCTTCAAGAATGTTATGAACAATGCCTTGAAAACCAACTTGTGGATGCCTCTACAGCTACGAAGAAGGAGTACGACGACGATGGCGATCTCATTGTTTGCTGGGTTTGTGTGTTTTTTTTCTACCTCTTCTTCTTTCCAGTAGCTTGTGATTGTAATTTCCTTTTGCTATTATGTTTTTTATGAAATTTGAAAATTTGGTGTTATTTGGCTCAGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAA

mRNA sequence

ATGGTTGGGGTTATTTGTTCATCCTTTTTGAGGATATGTCTGGAACAAATTTCAAAATTGAGAAAGGAAAGAAAAATAAAACTTTCACTAGAAGAAATTTGGCCTTTAATGTCGGAATGTTATGAACAATGCCTTGAAAACCAACTTGTGGATGCCTCTACAGCTACGAAGAAGGAGTACGACGACGATGGCGATCTCATTGTTTGCTGGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAA

Coding sequence (CDS)

ATGGTTGGGGTTATTTGTTCATCCTTTTTGAGGATATGTCTGGAACAAATTTCAAAATTGAGAAAGGAAAGAAAAATAAAACTTTCACTAGAAGAAATTTGGCCTTTAATGTCGGAATGTTATGAACAATGCCTTGAAAACCAACTTGTGGATGCCTCTACAGCTACGAAGAAGGAGTACGACGACGATGGCGATCTCATTGTTTGCTGGTTATCAAGCAAGAGGAAGGTGACCAAAATAAATAAAAAGGCCGAAGTCTAA

Protein sequence

MVGVICSSFLRICLEQISKLRKERKIKLSLEEIWPLMSECYEQCLENQLVDASTATKKEYDDDGDLIVCWLSSKRKVTKINKKAEV
Homology
[Close]
BLAST of MELO3C032031.2 vs. NCBI nr
Match: XP_022985429.1 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 42  EQCLENQLVDASTATKKEYDDDGDLIVCWLSSKRKVT 79
           E  L+ +  DAS A +KEYDDDGDLIVCWLSSKRKVT
Sbjct: 64  EDQLQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVT 100

[Close]
BLAST of MELO3C032031.2 vs. NCBI nr
Match: XP_008451928.1 (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 37  MSECYEQCLENQLVDASTATKKEYDDDGDLIVCWLSSKRKVT 79
           + E  EQ  +    DAS A +KEYDDDGDLIVCWLSSKRKVT
Sbjct: 59  LQERSEQQPQXXAEDASAAKEKEYDDDGDLIVCWLSSKRKVT 100

[Close]
BLAST of MELO3C032031.2 vs. NCBI nr
Match: XP_022931551.1 (RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP_023551821.1 RNA polymerase II transcriptional coactivator KELP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 6.3e-05
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 37  MSECYEQCLENQLVDASTATKKEYDDDGDLIVCWLSSKRKVT 79
           + E  E   + +  DAS A +KEYDDDGDLIVCWLSSKRKVT
Sbjct: 59  LQERSEDQPQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVT 100

[Close]
BLAST of MELO3C032031.2 vs. TrEMBL
Match: tr|A0A1S3BS20|A0A1S3BS20_CUCME (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LOC103493081 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-05
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 37  MSECYEQCLENQLVDASTATKKEYDDDGDLIVCWLSSKRKVT 79
           + E  EQ  +    DAS A +KEYDDDGDLIVCWLSSKRKVT
Sbjct: 59  LQERSEQQPQXXAEDASAAKEKEYDDDGDLIVCWLSSKRKVT 100

[Close]
BLAST of MELO3C032031.2 vs. TrEMBL
Match: tr|A0A0A0KZW5|A0A0A0KZW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.8e-04
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 53  STATKKEYDDDGDLIVCWLSSKRKVT 79
           S A +KEYDDDGDLIVCWLSSKRKVT
Sbjct: 75  SAAKEKEYDDDGDLIVCWLSSKRKVT 100

The following BLAST results are available for this feature:
BLAST of MELO3C032031.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022985429.11.3e-0572.97RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita ma... [more]
XP_008451928.14.8e-0566.67PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo][more]
XP_022931551.16.3e-0564.29RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP... [more]
BLAST of MELO3C032031.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032031.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032031.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BS20|A0A1S3BS20_CUCME3.2e-0566.67RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0KZW5|A0A0A0KZW5_CUCSA7.8e-0488.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032031.2.1MELO3C032031.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032031.2Cucumber (Gy14) v2cgybmedB216
MELO3C032031.2Cucumber (Gy14) v1cgymedB338
MELO3C032031.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032031.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032031.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032031.2Cucurbita moschata (Rifu)cmomedB483
MELO3C032031.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032031.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032031.2Wild cucumber (PI 183967)cpimedB240
MELO3C032031.2Cucumber (Chinese Long) v2cumedB239
MELO3C032031.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032031.2Watermelon (Charleston Gray)medwcgB417
MELO3C032031.2Watermelon (97103) v1medwmB448
MELO3C032031.2Silver-seed gourdcarmedB0771
MELO3C032031.2Cucumber (Chinese Long) v3cucmedB247
MELO3C032031.2Watermelon (97103) v2medwmbB424
MELO3C032031.2Wax gourdmedwgoB531