MELO3C032028.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032028.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	nudix hydrolase 3-like
Location	chr06 : 14369353 .. 14370125 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGATCGACCGTGTGGAGTTGTTTCGAAAAATACACGTTCGAGCCGGGACGTTCGTGTCGCAGGACACAAAGGATACACATGTAAGTTATTGAACCAACATTATGCCCTTATTAATTATATCCTCTTTCGTTATATATTTTTGCGTTACTTAACTTAGTTTTTAAAATTGTTGCAGAATCAAATGCTGGAACTCCAGTCCCAGCCTACCTTAGAGGGTAGCCCTGGGGATGAGATATGCGATCAAGTGTTGGGTAGACGATCAAGCTACTCGAAAGGCCTTGGTTGGGGACTCAAGTCGAAGGCCCGCAAGACAACGAGTGCAAGCAATTCCATGACATCTTGTTTGTCGTCCACACAAAAAGAGATTGAATTACAATCTTAACATAATGAAGCTTTGGAACGTATTGAAGTGCAAAATAGAAATCACGCAACATTAGCTTCACAAGTGGAACGAATGCAATAGTTGATAGAAGACTTGACTCGGGCACAGCAAGGACCACCCCACGATCCCTAACTTTGTGGTACGTATATATATGTCCATTATTCTTAAGTTTTTGCAATGATAGTATACAGTGAACATATGGATATATGTACTACACTTACTTACTTTTGTATCATTATAGGATCCTGTAGAATGACGCGTACGAGCCTCGCGTTAGGAGACATACGACTTTGTTTGCCGATTTTTGTATTATGACAACTCCATTTTTTGTATTATGAACGC

mRNA sequence

ATGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGATCGACCGTGTGGAGTTGTTTCGAAAAATACACGTTCGAGCCGGGACGTTCGTGTCGCAGGACACAAAGGATACACATAATCAAATGCTGGAACTCCAGTCCCAGCCTACCTTAGAGGGTAGCCCTGGGGATGAGATATGCGATCAAGTGTTGGGTAGACGATCAAGCTACTCGAAAGGCCTTGGTTGGGGACTCAAGTCGAAGGCCCGCAAGACAACGAGTGCAAGCAATTCCATGACATCTTGTTTGTCGTCCACACAAAAAGAGATTGAATTACAATCTTAACATAATGAAGCTTTGGAACGTATTGAAGTGCAAAATAGAAATCACGCAACATTAGCTTCACAAGTGGAACGAATGCAATAGTTGATAGAAGACTTGACTCGGGCACAGCAAGGACCACCCCACGATCCCTAACTTTGTGGTACGTATATATATGTCCATTATTCTTAAGTTTTTGCAATGATAGTATACAGTGAACATATGGATATATGTACTACACTTACTTACTTTTGTATCATTATAGGATCCTGTAGAATGACGCGTACGAGCCTCGCGTTAGGAGACATACGACTTTGTTTGCCGATTTTTGTATTATGACAACTCCATTTTTTGTATTATGAACGC

Coding sequence (CDS)

ATGTCGTTTCTACAACGACAGCACGAGCTCGCTGAGAAGAAAGGGGAGTCGATCGACCGTGTGGAGTTGTTTCGAAAAATACACGTTCGAGCCGGGACGTTCGTGTCGCAGGACACAAAGGATACACATAATCAAATGCTGGAACTCCAGTCCCAGCCTACCTTAGAGGGTAGCCCTGGGGATGAGATATGCGATCAAGTGTTGGGTAGACGATCAAGCTACTCGAAAGGCCTTGGTTGGGGACTCAAGTCGAAGGCCCGCAAGACAACGAGTGCAAGCAATTCCATGACATCTTGTTTGTCGTCCACACAAAAAGAGATTGAATTACAATCTTAA

Protein sequence

MSFLQRQHELAEKKGESIDRVELFRKIHVRAGTFVSQDTKDTHNQMLELQSQPTLEGSPGDEICDQVLGRRSSYSKGLGWGLKSKARKTTSASNSMTSCLSSTQKEIELQS

Homology

[Close]

BLAST of MELO3C032028.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 2   SFLQRQHELAEKKGESIDRVELFRKIHVRAGTFVSQDTKDTHNQMLELQSQPTLEGS--- 61
           SFLQRQ+ELAE+KGE +D VELFR+ HVRAGTF+SQ  +D HNQMLELQSQPTLEGS   
Sbjct: 209 SFLQRQYELAERKGEPVDCVELFRETHVRAGTFMSQAAEDAHNQMLELQSQPTLEGSQPL 268

Query: 62  PGDEICD 66
             DEICD
Sbjct: 269 SEDEICD 275

[Close]

BLAST of MELO3C032028.2 vs. NCBI nr
Match: XP_008447319.1 (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 35  VSQDTKDTHNQMLELQSQPTLEGS---PGDEICDQVLGRRSSYSKGLGWGLKSKARKTTS 94
           +SQ  +D H       SQPTLEG+    GDEI + +L RRS  SKGLGWG K KA K TS
Sbjct: 1   MSQAAEDVH-------SQPTLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTS 60

Query: 95  ASNSMTSCLSSTQKEIELQ 111
           AS+SMTSC    Q  IELQ
Sbjct: 61  ASSSMTSC---PQSIIELQ 69

[Close]

BLAST of MELO3C032028.2 vs. NCBI nr
Match: XP_019080375.1 (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 2   SFLQRQHELAEKKGESIDRVELFRKIHVRAGTFVSQDTKDTHNQMLELQSQPTLEGSPG- 61
           SF+Q   +++ + GE + ++ELF+ +H     + SQD      +MLELQ QP  EG+   
Sbjct: 178 SFIQHGLQVSTENGEMVGQIELFKLVH-----WKSQDGWINQEKMLELQRQPIAEGAVAM 237

Query: 62  --DEICDQVLGRRSSYSKGLGWGLKSKARKTTSASNSMTSCLSSTQKEIELQ 111
              +IC++VLG++S Y KGLG+G      K  S S S     SS+++EIEL+
Sbjct: 238 TEAKICERVLGQKSGYVKGLGFG-----PKPISFSKSRP---SSSEREIELE 276

[Close]

BLAST of MELO3C032028.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 2   SFLQRQHELAEKKGESIDRVELFRKIHVRAGTFVSQDTKDTHNQMLELQSQPTLEGS--- 61
           SFLQRQ+ELAE+KGE +D VELFR+ HVRAGTF+SQ  +D HNQMLELQSQPTLEGS   
Sbjct: 209 SFLQRQYELAERKGEPVDCVELFRETHVRAGTFMSQAAEDAHNQMLELQSQPTLEGSQPL 268

Query: 62  PGDEICD 66
             DEICD
Sbjct: 269 SEDEICD 275

[Close]

BLAST of MELO3C032028.2 vs. TrEMBL
Match: tr|A0A1S3BH46|A0A1S3BH46_CUCME (uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 35  VSQDTKDTHNQMLELQSQPTLEGS---PGDEICDQVLGRRSSYSKGLGWGLKSKARKTTS 94
           +SQ  +D H       SQPTLEG+    GDEI + +L RRS  SKGLGWG K KA K TS
Sbjct: 1   MSQAAEDVH-------SQPTLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTS 60

Query: 95  ASNSMTSCLSSTQKEIELQ 111
           AS+SMTSC    Q  IELQ
Sbjct: 61  ASSSMTSC---PQSIIELQ 69

The following BLAST results are available for this feature:

BLAST of MELO3C032028.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	2.4e-17	74.63	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_008447319.1	3.9e-07	55.70	PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo]	[more]
XP_019080375.1	5.6e-06	38.39	PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera]	[more]

BLAST of MELO3C032028.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032028.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032028.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	1.6e-17	74.63	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3BH46\|A0A1S3BH46_CUCME	2.6e-07	55.70	uncharacterized protein LOC103489789 OS=Cucumis melo OX=3656 GN=LOC103489789 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032028.2.1	MELO3C032028.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 2..53 e-value: 5.1E-6 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..111
None	No IPR available	PANTHER	PTHR33499	FAMILY NOT NAMED	coord: 2..108

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032028.2	Cucumber (Gy14) v2	cgybmedB213
MELO3C032028.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032028.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C032028.2	Cucumber (Gy14) v1	cgymedB143
MELO3C032028.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032028.2	Cucumber (Gy14) v1	cgymedB338
MELO3C032028.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032028.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032028.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032028.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032028.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032028.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032028.2	Wild cucumber (PI 183967)	cpimedB237
MELO3C032028.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032028.2	Cucumber (Chinese Long) v2	cumedB237
MELO3C032028.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032028.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032028.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032028.2	Watermelon (97103) v1	medwmB448
MELO3C032028.2	Silver-seed gourd	carmedB0185
MELO3C032028.2	Silver-seed gourd	carmedB0771
MELO3C032028.2	Cucumber (Chinese Long) v3	cucmedB244
MELO3C032028.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032028.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C032028.2	Watermelon (97103) v2	medwmbB424
MELO3C032028.2	Wax gourd	medwgoB531