MELO3C032027.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032027.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr06 : 14368405 .. 14369176 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTGTATTTACTTATTCAATTTTTGTTTTCTATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGTGAGTATAATAGTTTCTTTCATTTTAACTTACGATTATTTCATTTTTTTCTCCAACACTATATGTTATTATCGATTTATTGAGCAGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGGTACGAAGAAACCTATTTCTCCACACGCCGTTCGCTTCAACCAAGCGATAGGCGTGCGCGAGTGAAAGACATTTTCCGTCTGCTGCCTTAAGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGGTAATTAAGTCCACTACACATTCATGATTTCATTTGAAACATATTTAAGTTAAGCAATCTAATGTGTTATTTTTGTAATGTGTAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA

mRNA sequence

GTGTTTGTATTTACTTATTCAATTTTTGTTTTCTATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA

Coding sequence (CDS)

ATGTCCACATGCATTATGTCGTCGTCATATCCACGTCATAATTTTTTGGAGACGGATACTATGTTCCTCGAGTTAGATAACTTTGCGGGAGGGTCGTCGTCAGTCGACGACAATGTGGGATCGTCTTTTCAACAACCTAGGACTCCAACTCCTAGGAGACGTGCGCAGTCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAGTACATGGACGCATTCCGATGACGATCGCCCCTGTGGACGGACGCGGATGGACGTTGGCAGAGAATACATTGAAGGTTGTCAAGGGCAACCTCCAGCGATTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACCACCTCTAAAAAGTTTTGGGCCTACTGTCACAAACACTTTAAAAAGTACAGCGACCCCGAGGAGGCTCATGCCAACCTACCAAACATATTGGTTGGACGTTATGAGGATTGA

Protein sequence

MSTCIMSSSYPRHNFLETDTMFLELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED

Homology

[Close]

BLAST of MELO3C032027.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 105/173 (60.69%), Postives = 116/173 (67.05%), Query Frame = 0


Query: 16  LETDTMFL----ELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
           +ETD MFL    +LDN AGGSSSV DN  SS QQ  TPTPRRRAQSRLLELERHVA++G 
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 76  IPMTIA--------------------------PVDGRGWT-LAENTLKVVKGNLQRFFVL 135
           IPMTIA                          PV    W  +    ++VVKG+LQRFFVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 136 DFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           DFNDQAMNRFVEHQM+TT K+F   CH+HFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C032027.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 5.2e-42
Identity = 104/179 (58.10%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 10  YPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERH 69
           Y R+NFLETD MFLE    LDN AGGSSSV DN GSS Q P T TPRRR QSRLLELE H
Sbjct: 3   YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECH 62

Query: 70  VAVHGRIPMTIAP--------------------------VDGRGWT-LAENTLKVVKGNL 129
           V V+G IPM IAP                          V    W  +    ++VVKGNL
Sbjct: 63  VVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNL 122

Query: 130 QRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           QRFFVLDFNDQA+NRFVEHQMLTT K+FW  CH+HFK      EA AN PN+LVGR+ED
Sbjct: 123 QRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C032027.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 154.1 bits (388), Expect = 4.0e-34
Identity = 89/154 (57.79%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 8   SSYPRHNFLETDTMFL----ELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELE 67
           SS+PR+NFLETD MFL    +LDN AGGSSS+D+N  SS Q   T TP+R  QSRLLELE
Sbjct: 52  SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELE 111

Query: 68  RHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTS 127
            +V              GR +      ++VVK +LQ FFVLDF+DQAMN  VE+QM  T 
Sbjct: 112 CYVT-------------GREY------IEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTF 171

Query: 128 KKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           K+FW  CHK FKKYSDPEEA AN PN+LVGR ED
Sbjct: 172 KEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

[Close]

BLAST of MELO3C032027.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 50/63 (79.37%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 6  MSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLE 65
          MSSSYPRHNFLETDTMFLE    LDNF GGSSSV DNVGSS QQP T TPRR  QSRLL 
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLG 60

[Close]

BLAST of MELO3C032027.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 105/173 (60.69%), Postives = 116/173 (67.05%), Query Frame = 0


Query: 16  LETDTMFL----ELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERHVAVHGR 75
           +ETD MFL    +LDN AGGSSSV DN  SS QQ  TPTPRRRAQSRLLELERHVA++G 
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 76  IPMTIA--------------------------PVDGRGWT-LAENTLKVVKGNLQRFFVL 135
           IPMTIA                          PV    W  +    ++VVKG+LQRFFVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 136 DFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           DFNDQAMNRFVEHQM+TT K+F   CH+HFKKYSDPEEA AN PN LVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C032027.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.5e-42
Identity = 104/179 (58.10%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 10  YPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELERH 69
           Y R+NFLETD MFLE    LDN AGGSSSV DN GSS Q P T TPRRR QSRLLELE H
Sbjct: 3   YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECH 62

Query: 70  VAVHGRIPMTIAP--------------------------VDGRGWT-LAENTLKVVKGNL 129
           V V+G IPM IAP                          V    W  +    ++VVKGNL
Sbjct: 63  VVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNL 122

Query: 130 QRFFVLDFNDQAMNRFVEHQMLTTSKKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           QRFFVLDFNDQA+NRFVEHQMLTT K+FW  CH+HFK      EA AN PN+LVGR+ED
Sbjct: 123 QRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C032027.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 89/154 (57.79%), Postives = 104/154 (67.53%), Query Frame = 0


Query: 8   SSYPRHNFLETDTMFL----ELDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLELE 67
           SS+PR+NFLETD MFL    +LDN AGGSSS+D+N  SS Q   T TP+R  QSRLLELE
Sbjct: 52  SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELE 111

Query: 68  RHVAVHGRIPMTIAPVDGRGWTLAENTLKVVKGNLQRFFVLDFNDQAMNRFVEHQMLTTS 127
            +V              GR +      ++VVK +LQ FFVLDF+DQAMN  VE+QM  T 
Sbjct: 112 CYVT-------------GREY------IEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTF 171

Query: 128 KKFWAYCHKHFKKYSDPEEAHANLPNILVGRYED 158
           K+FW  CHK FKKYSDPEEA AN PN+LVGR ED
Sbjct: 172 KEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

[Close]

BLAST of MELO3C032027.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.8e-15
Identity = 50/63 (79.37%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 6  MSSSYPRHNFLETDTMFLE----LDNFAGGSSSVDDNVGSSFQQPRTPTPRRRAQSRLLE 65
          MSSSYPRHNFLETDTMFLE    LDNF GGSSSV DNVGSS QQP T TPRR  QSRLL 
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLG 60

The following BLAST results are available for this feature:

BLAST of MELO3C032027.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	1.8e-42	60.69	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	5.2e-42	58.10	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	4.0e-34	57.79	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_016902990.1	4.2e-15	79.37	PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo]	[more]

BLAST of MELO3C032027.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032027.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032027.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	1.2e-42	60.69	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	3.5e-42	58.10	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	2.7e-34	57.79	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A1S4E4T7\|A0A1S4E4T7_CUCME	2.8e-15	79.37	uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032027.2.1	MELO3C032027.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032027.2	Cucumber (Gy14) v2	cgybmedB213
MELO3C032027.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032027.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C032027.2	Cucumber (Gy14) v1	cgymedB143
MELO3C032027.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032027.2	Cucumber (Gy14) v1	cgymedB338
MELO3C032027.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032027.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032027.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032027.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032027.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032027.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032027.2	Wild cucumber (PI 183967)	cpimedB237
MELO3C032027.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032027.2	Cucumber (Chinese Long) v2	cumedB237
MELO3C032027.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032027.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032027.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032027.2	Watermelon (97103) v1	medwmB448
MELO3C032027.2	Silver-seed gourd	carmedB0185
MELO3C032027.2	Silver-seed gourd	carmedB0771
MELO3C032027.2	Cucumber (Chinese Long) v3	cucmedB244
MELO3C032027.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032027.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C032027.2	Watermelon (97103) v2	medwmbB424
MELO3C032027.2	Wax gourd	medwgoB531