MELO3C032025.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032025.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Lysine ketoglutarate reductase trans-splicing-like protein
Location	chr06 : 14189982 .. 14191790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATATTTTCGTGACGTCTCCGTGCATAGCATCGTGAAAGGCTTATGCTCTCTCGACGTTGGCATAGCTCATCATTGCCAACACCTCCTTTACTGCATCGTGAAAAGTATCTTCTTACAACATCATTTATCCCAACGCCTATTTTAGCGTCAGAATAGCTCCGATTTCTTATAATATTTCTTCGCTACCGTATTCCTTGGTGCGAGTTTATTGCATTGCAAGTGAGTATATTTATTACAAAGGTATAAATTGAAGCATATTTTTCCATGATTCTTGTAACATGTTATATGTGCATAGAGATGACATTTGGCAGTATATCTTGAAGGTTAAGTTAATGGGTTCTTTTTATGGTTTATCATTGACTTTTGTTCTAGTTTAATCAGTTTTCTAAATCTTTTGTTCCTACCTCATCTTCCTTCCTTCTTAGAATCAATACAGGCCTCCTGGGAGCGAGTCTTTACCGGAAGGAATTATTAGTAAATCATCTAATTTTGAATTTCAGCCTCTTTGGGGCTCGTCTTCACAAAATGTAAGTGACTTGTATATTCATGTGAAATCTTGCTTACCAGATTTCTGATATGAATCTTTCTTCTCCAATGAAATGTAACTTTTGTTATGTTTGAATAAAGTGGAAAGTCAAATTTTCAGTTTTCATGATTTAATTTGTTGGTAAATGATTTAAGATAAGTACTTTGTTTCAATCAAGTACATGGCTTGGTTAATTCATTTAATAGAATAGTCCAACTATCTCACTTATATACAACTCAGTTCATGAATAGACAAAATCTATTTATAAAAACTACACGTATTTATTGTTTGGGCCGAAAAATGATGATATACCATTCTCCTTTGTCTTTTGCCAGAAAAAGCCGAAGGTTTCCAAGAACTTATTAGCAATTGCTGCTGGAATCAAACAAAGACATGTAGTGTCAAAAATTATTGAAAAGGTTGTGATTTGATGCCCTTATTGTCTTTTACATCTTTTTAGCAATCTGTTCCTTAGTTGCTGGTCTTCTTTAATTTCCAGGAGAGCGAAACTCTACCGAAAACCTAAAAATATTAAAGGTCTTGAAAGCTTTCTCCCAACACGCTTGTGTACAAAGTAATTTTCCTTTTCCTTTTAATTTTTGAACAAGAAACAGAGCCTATTTGTTAATATGATGCTTTTTAGAGCAAATAATTAACTTCTTGATATTAAAGTTTTAAGTGTTAAACCTCTATCTGCATCGTTTCGAGCCCTGAATATATGATTTCAATGGTTAATTTTTGGCATATTTATGATTAAATTTATTACATTATTCATTTTATTTTGTAGGCTACTAGCAATTAAGATTATTTCATTATTCTAATTTGTTCTTTTTATGTAGTGTCCTCTACAAGTCGGGATCATCGAGTGTGGATACTACGTTACGAAGTTTATGAGAAAAATTGTGACTAAAGGAAGCATTGTCATCTCAGATTCGGTATGCTATTAAACTATTTCAATCATTCAAATAACGTAGGGAACAACAACTTTCTTTTGTGGGAGCATCTAATTTGTTGAGAATTGAGTTAATTGGTCTGATTGGATTGTGAGTTAATTTATTTTGCATGTTTATTGGTATATAGATCGACACATGAAGATCATACTCACAGATCAAGTTGGACAAGGTGCAAATTGAGTTGGCTGAATTTTTGGGTGCGTACATTTAAAATTTTGGAAATGATTATATACATTTGTATGGTGAAAGATTCATTTATGTTCTAGTTTTGAGATTGTATTTGATGAATATTGTCGTTCATATTTATGGAAATGTTGTTGGGCCA

mRNA sequence

ATGAAATATTTTCGTGACGTCTCCGTGCATAGCATCGTGAAAGGCTTATGCTCTCTCGACGTTGGCATAGCTCATCATTGCCAACACCTCCTTTACTGCATCAATCAATACAGGCCTCCTGGGAGCGAGTCTTTACCGGAAGGAATTATTAGTAAATCATCTAATTTTGAATTTCAGCCTCTTTGGGGCTCGTCTTCACAAAATTGTCCTCTACAAGTCGGGATCATCGAGTGTGGATACTACGTTACGAAGTTTATGAGAAAAATTGTGACTAAAGGAAGCATTGTCATCTCAGATTCGATCGACACATGAAGATCATACTCACAGATCAAGTTGGACAAGGTGCAAATTGAGTTGGCTGAATTTTTGGGTGCGTACATTTAAAATTTTGGAAATGATTATATACATTTGTATGGTGAAAGATTCATTTATGTTCTAGTTTTGAGATTGTATTTGATGAATATTGTCGTTCATATTTATGGAAATGTTGTTGGGCCA

Coding sequence (CDS)

ATGAAATATTTTCGTGACGTCTCCGTGCATAGCATCGTGAAAGGCTTATGCTCTCTCGACGTTGGCATAGCTCATCATTGCCAACACCTCCTTTACTGCATCAATCAATACAGGCCTCCTGGGAGCGAGTCTTTACCGGAAGGAATTATTAGTAAATCATCTAATTTTGAATTTCAGCCTCTTTGGGGCTCGTCTTCACAAAATTGTCCTCTACAAGTCGGGATCATCGAGTGTGGATACTACGTTACGAAGTTTATGAGAAAAATTGTGACTAAAGGAAGCATTGTCATCTCAGATTCGATCGACACATGA

Protein sequence

MKYFRDVSVHSIVKGLCSLDVGIAHHCQHLLYCINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQNCPLQVGIIECGYYVTKFMRKIVTKGSIVISDSIDT

Homology

[Close]

BLAST of MELO3C032025.2 vs. NCBI nr
Match: KGN49567.1 (hypothetical protein Csa_5G003110 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33 CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQN 69
          C NQ RPPGSESLPEGIISK+SNFEFQPLWGSS QN
Sbjct: 62 CKNQCRPPGSESLPEGIISKTSNFEFQPLWGSSLQN 97

[Close]

BLAST of MELO3C032025.2 vs. NCBI nr
Match: XP_011654448.1 (PREDICTED: uncharacterized protein LOC101205845, partial [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33  CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQN 69
           C NQ RPPGSESLPEGIISK+SNFEFQPLWGSS QN
Sbjct: 85  CKNQCRPPGSESLPEGIISKTSNFEFQPLWGSSLQN 120

[Close]

BLAST of MELO3C032025.2 vs. NCBI nr
Match: XP_008464732.2 (PREDICTED: uncharacterized protein LOC103502548, partial [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33  CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQN 69
           C NQ RPPGSESLPEGIISK+SNFEFQPLWGSS QN
Sbjct: 88  CKNQCRPPGSESLPEGIISKTSNFEFQPLWGSSLQN 123

[Close]

BLAST of MELO3C032025.2 vs. NCBI nr
Match: XP_022994238.1 (uncharacterized protein LOC111490034 [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 33  CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQNCPLQVG----IIECGYYVTKFMRK 92
           C N+ RPPGSESLPEGIISK+SNFEF PLWGSS QN  L++      I  G    + + K
Sbjct: 62  CKNRCRPPGSESLPEGIISKTSNFEFHPLWGSSVQNKMLKMSKNLLAIAIGIKQRRVVSK 121

[Close]

BLAST of MELO3C032025.2 vs. NCBI nr
Match: XP_022930038.1 (uncharacterized protein LOC111436473 [Cucurbita moschata])

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 33  CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQNCPLQVG----IIECGYYVTKFMRK 92
           C N+ RPPGSESLPEGII+K+SNFEF PLWGSS QN  L++      I  G    + + K
Sbjct: 62  CKNRCRPPGSESLPEGIITKTSNFEFHPLWGSSVQNKMLKMSKNLLAIAVGIKQRRVVSK 121

[Close]

BLAST of MELO3C032025.2 vs. TAIR10
Match: AT4G12840.1 (Protein of unknown function (DUF707))

HSP 1 Score: 50.4 bits (119), Expect = 7.5e-07
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 30  LLYCINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQNCP 71
           L  C  Q RPPGSE+LP GI++ +S+ E +PLWG+     P
Sbjct: 67  LKMCKTQLRPPGSETLPRGIVASTSDLEMRPLWGAKRDKKP 107

[Close]

BLAST of MELO3C032025.2 vs. TAIR10
Match: AT4G18530.1 (Protein of unknown function (DUF707))

HSP 1 Score: 40.8 bits (94), Expect = 5.9e-04
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 33 CINQYRPPGSESLPEGIISKSSNFEFQPLW 63
          C N  +P G+E+LP+GII K+SN E Q LW
Sbjct: 65 CKNFNKPVGTEALPQGIIEKTSNLETQHLW 94

[Close]

BLAST of MELO3C032025.2 vs. TrEMBL
Match: tr|A0A1S3CM49|A0A1S3CM49_CUCME (uncharacterized protein LOC103502548 OS=Cucumis melo OX=3656 GN=LOC103502548 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33  CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQN 69
           C NQ RPPGSESLPEGIISK+SNFEFQPLWGSS QN
Sbjct: 88  CKNQCRPPGSESLPEGIISKTSNFEFQPLWGSSLQN 123

[Close]

BLAST of MELO3C032025.2 vs. TrEMBL
Match: tr|A0A0A0KMF9|A0A0A0KMF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003110 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 33 CINQYRPPGSESLPEGIISKSSNFEFQPLWGSSSQN 69
          C NQ RPPGSESLPEGIISK+SNFEFQPLWGSS QN
Sbjct: 62 CKNQCRPPGSESLPEGIISKTSNFEFQPLWGSSLQN 97

[Close]

BLAST of MELO3C032025.2 vs. TrEMBL
Match: tr|B9IQ12|B9IQ12_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=4 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 22  GIAHHCQHLLY--CINQYRPPGSESLPEGIISKSSNFEFQPLWG--SSSQNCPLQVGIIE 81
           GIA   Q+  +  C NQ RPPGSESLPEGI+SK+SNF+ +PLWG   + +N  + +  + 
Sbjct: 55  GIADTFQNFKFSNCKNQCRPPGSESLPEGIVSKTSNFQMRPLWGFPKNDENSSINLLAVA 114

Query: 82  CGYYVTKFMRKIVTK 93
            G      + K+V K
Sbjct: 115 VGITQRDLVNKMVKK 129

[Close]

BLAST of MELO3C032025.2 vs. TrEMBL
Match: tr|A0A2K1WQ16|A0A2K1WQ16_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 22  GIAHHCQHLLY--CINQYRPPGSESLPEGIISKSSNFEFQPLWG--SSSQNCPLQVGIIE 81
           GIA   Q+  +  C NQ RPPGSESLPEGI+SK+SNF+ +PLWG   + +N  + +  + 
Sbjct: 55  GIADTFQNFKFSNCKNQCRPPGSESLPEGIVSKTSNFQMRPLWGFPKNDENSSINLLAVA 114

Query: 82  CGYYVTKFMRKIVTK 93
            G      + K+V K
Sbjct: 115 VGITQRDLVNKMVKK 129

[Close]

BLAST of MELO3C032025.2 vs. TrEMBL
Match: tr|A0A2K1WQ13|A0A2K1WQ13_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 22  GIAHHCQHLLY--CINQYRPPGSESLPEGIISKSSNFEFQPLWG--SSSQNCPLQVGIIE 81
           GIA   Q+  +  C NQ RPPGSESLPEGI+SK+SNF+ +PLWG   + +N  + +  + 
Sbjct: 55  GIADTFQNFKFSNCKNQCRPPGSESLPEGIVSKTSNFQMRPLWGFPKNDENSSINLLAVA 114

Query: 82  CGYYVTKFMRKIVTK 93
            G      + K+V K
Sbjct: 115 VGITQRDLVNKMVKK 129

The following BLAST results are available for this feature:

BLAST of MELO3C032025.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49567.1	1.7e-09	88.89	hypothetical protein Csa_5G003110 [Cucumis sativus]	[more]
XP_011654448.1	1.7e-09	88.89	PREDICTED: uncharacterized protein LOC101205845, partial [Cucumis sativus]	[more]
XP_008464732.2	1.7e-09	88.89	PREDICTED: uncharacterized protein LOC103502548, partial [Cucumis melo]	[more]
XP_022994238.1	3.8e-09	57.81	uncharacterized protein LOC111490034 [Cucurbita maxima]	[more]
XP_022930038.1	8.5e-09	56.25	uncharacterized protein LOC111436473 [Cucurbita moschata]	[more]

BLAST of MELO3C032025.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12840.1	7.5e-07	48.78	Protein of unknown function (DUF707)	[more]
AT4G18530.1	5.9e-04	56.67	Protein of unknown function (DUF707)	[more]

BLAST of MELO3C032025.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032025.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM49\|A0A1S3CM49_CUCME	1.1e-09	88.89	uncharacterized protein LOC103502548 OS=Cucumis melo OX=3656 GN=LOC103502548 PE=...	[more]
tr\|A0A0A0KMF9\|A0A0A0KMF9_CUCSA	1.1e-09	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003110 PE=4 SV=1	[more]
tr\|B9IQ12\|B9IQ12_POPTR	2.4e-07	44.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=...	[more]
tr\|A0A2K1WQ16\|A0A2K1WQ16_POPTR	2.4e-07	44.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=...	[more]
tr\|A0A2K1WQ13\|A0A2K1WQ13_POPTR	2.4e-07	44.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G053000v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032025.2.1	MELO3C032025.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032025.2	Silver-seed gourd	carmedB0185
MELO3C032025.2	Silver-seed gourd	carmedB0771
MELO3C032025.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032025.2	Watermelon (97103) v2	medwmbB424
MELO3C032025.2	Wax gourd	medwgoB531
MELO3C032025.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032025.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032025.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032025.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032025.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032025.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032025.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032025.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032025.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032025.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032025.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032025.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032025.2	Watermelon (97103) v1	medwmB448