MELO3C032023.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032023.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	nicastrin isoform X2
Location	chr06 : 14114656 .. 14115242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGGTATGTTCAAAGAGAAATAGCTATCAATTTTTTTTGTTTCAATGTCTTCTTATTGCTCGTTGGATATGAATGCCAATCAGTGTTGACGTCTTGTGTATAAATTACTTCCAATTTCGTATTCTGTATAGTTTATTGGCAGCTAAAGGGTGCATTGTTTGCAGCAATTAGTTGCCGTTTTGATACTTTATATATGCATTTCACCACCGAATGTTTTGTTGTACGTGTTTTGTTTGCTTAAACGCTGGTTTCTCTGCTTCCCTTCAAGTTCTCATTGCATATACATCATATTTTTTTAACCAGTGGAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

mRNA sequence

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

Coding sequence (CDS)

ATGAACGATCCGACGGACTCCGATTTGATAGAAAGAACACCCAAATCATCATCCATGTCTTCCCAGTTTCTCTACCTCCTTCTGTTTCTTACTTCTCTTCGTCTCTCTTCATCAGTTACTATTCCATCCCCACCAAGCTTATTCTATGGTTCATACTCTTCTGATGCCTCTCTGCCGAACTCCCCAAACTATCCTATCATGTGGCAGAAGGTTGGAAGAACATTTTTAGATGTTGCTGTTCCCATTGTATGGTTGATTACTGTTGCTACATCGTTTGGCTGA

Protein sequence

MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSSVTIPSPPSLFYGSYSSDASLPNSPNYPIMWQKVGRTFLDVAVPIVWLITVATSFG

Homology

[Close]

BLAST of MELO3C032023.2 vs. NCBI nr
Match: XP_008457115.1 (PREDICTED: nicastrin isoform X1 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023.2 vs. NCBI nr
Match: XP_008457117.1 (PREDICTED: nicastrin isoform X2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023.2 vs. TrEMBL
Match: tr|A0A1S3C4C7|A0A1S3C4C7_CUCME (nicastrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

[Close]

BLAST of MELO3C032023.2 vs. TrEMBL
Match: tr|A0A1S3C4S1|A0A1S3C4S1_CUCME (nicastrin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 39
          MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS
Sbjct: 1  MNDPTDSDLIERTPKSSSMSSQFLYLLLFLTSLRLSSS 38

The following BLAST results are available for this feature:

BLAST of MELO3C032023.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457115.1	2.7e-09	100.00	PREDICTED: nicastrin isoform X1 [Cucumis melo]	[more]
XP_008457117.1	2.7e-09	100.00	PREDICTED: nicastrin isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C032023.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032023.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032023.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4C7\|A0A1S3C4C7_CUCME	1.8e-09	100.00	nicastrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1	[more]
tr\|A0A1S3C4S1\|A0A1S3C4S1_CUCME	1.8e-09	100.00	nicastrin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016485	protein processing
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032023.2.1	MELO3C032023.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032023.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032023.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032023.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032023.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032023.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032023.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032023.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032023.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032023.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032023.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032023.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032023.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032023.2	Watermelon (97103) v1	medwmB448
MELO3C032023.2	Silver-seed gourd	carmedB0185
MELO3C032023.2	Silver-seed gourd	carmedB0771
MELO3C032023.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032023.2	Watermelon (97103) v2	medwmbB424
MELO3C032023.2	Wax gourd	medwgoB531