MELO3C032019.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032019.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein indeterminate-domain 2-like
Location	chr06 : 13998819 .. 14002556 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTACATAAAGATCCTATGTTTTGTTTCTATTTCAAGGACATAATTCCATTATCAAAGTTTTTAGACTTAGAAGTTAAAGTTCTTAGTCTTAATGCTATTCTTATTTTGTTTGTAGATTTCAATGAGGTGAGGAATAACAATCAATTAGACTTTGAGTTTGGAGTTATCTAAGAGTGTTGTGGTGCTTAGAGGAGGGTGTGATGTCTCTGTTTGTTATTATTACATATACTTTTTGTTTTATAATTAAGAACAATGATCATAACTTGTTTTGTAATATGAATAAGAATGGTGTTCCTATGTTGTAAGTATGTAAATGACCAACTATATGTATATGTTCAACGATATATATGCAATTTGTTAGTTATTTGATTGAAAGTTTGGGTTGATTCAAGAAATGTAAATAGTTAAATTGATCATGTTGTATATCATTGTTGGACTTCAAAAGTGGTGCAATATAATTATATAAGTATTTTAAATTGAAAAATTTTTCATTTCAAGAAAAAAAACCTTCACATAAAAAACATATCAAGAATTAAATATTCTTATTCTTGATACTGGATTACTTGATACATAATAAGTATTAAGATTAAATATTCTTGACGGATAATACATGTCAAGAATAAACAAATTCTTGACACGTGAAAACTGTCAAGAAAAAGACCTTTATTTTTGACAAATTACTTAACACATTGAAAAGCATCAAGTAAACAAATACTTGACAGGTAAAAAGCATAGTAAGACTATTTTCATAGTAGTGAGTATTTATTACGGTGTTTGCTAATGGTTTGTTTCTCATTCCAAGAGCTCTCGTAGTTTCCAAGGTTGGGAGCTTTTCTTCTATAAGGATTAATTGTTACGTAAGTAAAGTCTTTAATTTGTTTGGTTTATTTGGTGGGTTTAATTTGTTTTGTTAATTTGATGGCTTTAATTGTTGTAATGTTTATAAGATTTGACCTTAAGCTTAGTTTTGTAGCTATATTTATAAGTTCTTACTATAGCAAACAACTTTCTTATCTTAAAGTTTTTGCTGAGAAATTTTTCTTGAGCTTTTATTTTGAGATTGTTAAGTTTAAAATATTTTTCATAACTTAGTATAACCTTTTTGTTGAAGGTTAGGTGTTTGAAAAAATGTCTGAGAGATATTCACTAGATTTTGAATTATAATACAAAAGGTTGCAAGACACTTGAAATTTTTGTTGTTATAAGTTTCTTTCTTTTAGTTGGTTTTAAATCATATTATACAAGTATTTTATTTATTACACGAGGTTGCCTATTTGCAAGATAAAATTAAACAGAGTCATAGTATGTAGAAAGGTTCATAAACTTGCAAAACATCTGTCAAGAATATTTGCCAATTTTATTTTGAATTCTTGAATTGTTTACTTATTTTTCATCAGAAGTGCAAAGATTGAAAGGAAGAAAATAATTGTACCAGATGAACATGTTTTGGTGAATTCGTGATTTAGAGTCTTTTATTGATATTTTGTACATACTTTTGAGATAGGTTTGTGTTGATGATTGTGAGCGTTGCTTTGTTAGGTTATTTTTGGTTCAATAAGTCATTTGAACTAAGTAGTAAATTATGAAACTACAGAGTATTATTTTTGCTAATATCTATGGACAATATTTTACTCTTTATTCGATAGCTTTCTTATAGTGTTGTCTTTATAATCCCAATTTGAGTTAACCTACTGCTTTCATACATTCAAATTTTAGATTTCTCATAGAAATCTTTCGATTTTCCTCTCTCAGGTTGTTCGAAGAAGAAGCTTGATTATTGAAGATTGATTTCACAAAGATGAAGAAGAAGAAGATTAAGATGGAAGAAAGAAGAGGATGAAGATTTAGAACACAAATTTTAGAGTGGTTCAGCAAAAATGCCTACATTGACTTTGAATGAGGATTTCTTTTCTTTTTGCTTTTCGGTTTTGTAAAGATTTTCTTCTTGTACAAAGTAGATGACAAAAACCAATGCAACCCTTGAATTTGTAGTGAACACATTCTAAGTAAGTTTCAATTCTTCTCACAGTTTGGTTTGATCTTTATAATCTTTAATTATTCACCTGATTTGCTAGTTTTTTGTTTTGAGTCTGAATATTTGTTTCAAACTCCAGTTTGTTTATTTAACTCTAATTGTTTCAATGTAGGCTAACTCTGAAATAGAAGAAACTGCTCCAGGTGTTGCGACAAGAATGATTCTATCACTACAAAAGAAATATTGCCCATTCTAAAATTTATGATACTCCTTTTTCCACGTTCGTAACTTCTCTCCTTTTCTTCATTTTTACTCCGTTTTTATGTTATGTTTTTTTAATTTGGGTTTTTCTTTGTTTGTTCTTCCATTTTTTTAGAAGAGATAGCTTTATTACCCATAGAGCTTTTTTGTGATGCATTGGTAGAGGAAAGTTCAAAAGCTAAGCTTCAGTCATTGGTGGACAAACCAATTTCTAATTCTTCTTCGAAAGCGATGGAGTCGGTGGAGCAAAAACCAAAGCTATCTCTTACCTATGATGTCGGTTGGAAAGATGCTCTGTCTCATCGTTGTTGTATAAATGGTCGTGTGTTTACCCATTTAAGATGAAAAATACATATGACTATATGAGTGAATTAAGAACAAATATTTTCGTTGTTACCGTGTAAATGCTTTTTCTTGAATCTTTGTAACGAGGTTTCATTACGGTTGAATGGATGTGAAGTGTAGGGACGCACCTTTACCTCAAGGTACTCACCTTCGTTTATAACAAACATTGTTGAATTATTGTCCGTTCAAGATATGAATGGGATTTATGTGCAAGTGCTATTAGCAATTTTTTTTGTGTGTGATGTATTGATTTAGATTAAAAAAAACGAAGAAAAAAAATGCTTGGTTACTTGGTTGCTTTGTTTGAATGAATGATATTCTAGAAGTGAGAAAGTTGAATTAGAAATTTAAAATTCTACCAAATATTGATAGAAAAATACTCCAAGTAATATAGGGAAGTTTTATTCTTATCCATTTATTTGATTATTATGAAGTCGACTCTAAAAGAAGGATTATTTTTTGTCGGTCATCTTTTGGCATGCATGTCTTTTTTTTTGTGAAGTCGGTTTCATGTGTGTGTTTTCTTCTGAAGGGACGAAAAAGAAATTTTTTAGACTTATGGCTAAGTTCATCTGCAACTACAAAATGTAGAAAATGTTATTGGTCTTTCGATAAAGGAAGTGGCCAATATAGGTATGGAATTTCATTCGTCAATGATCTTTATTTCTTCTCTTTTTCCTTTTATGATTGATGTGTTACCGTTCTTTTTCATTGAATCAATAATTTTAATTTATTGTGACTATTTTGATTGTAAGCTTTAACAAGAAAGAAAAAAAAGAAGAAGAAGAAGAAAGAACATCATGAAGTAAGTTGCTTCAATCTAGAACCGTTGGAAAGAAAGTTATCTACTTCACTGTTTGTGTTTTATACTTGTTGATATGATTTAATTGTATACTTGTAAGTAATTGTCAATGAAGAGTAGGATAAAGAACAAGCGGAGAGTGATGCAAGGATGGAACATAAATATGGTTGTTCCATGTACCTAAAATATTTAATGCATTGAAGTTGCTAGGATGCCACACTTTTTTTCAAAGCTACCTTTTTAGAATTCTAAATATTAAATGGTTGATTTAGATATTGTTTATAGAATGATTGAAATCATATCGGGTCGAAAGCTAAGCAAACATGTACATAGCAAGGCAATCGGGTAG

mRNA sequence

ATGCAAGTACATAAAGATCCTATGTTTTGTTTCTATTTCAAGGACATAATTCCATTATCAAAGTTTTTAGACTTAGAAGTTAAAGTTCTTAGTCTTAATGCTATTCTTATTTTGTTTGTAGATTTCAATGAGAACAATGATCATAACTTGTTTTGTAATATGAATAAGAATGGTGTTCCTATGTTAAGTGCAAAGATTGAAAGGAAGAAAATAATTGTACCAGATGAACATGTTTTGGCTAACTCTGAAATAGAAGAAACTGCTCCAGAAGAGATAGCTTTATTACCCATAGAGCTTTTTTGTGATGCATTGGTAGAGGAAAGTTCAAAAGCTAAGCTTCAGTCATTGGTGGACAAACCAATTTCTAATTCTTCTTCGAAAGCGATGGAGTCGGTGGAGCAAAAACCAAAGCTATCTCTTACCTATGATGTCGGTTGGAAAGATGCTCTGTCTCATCGTTGTTGTATAAATGGTCGTGATAAAGAACAAGCGGAGAGTGATGCAAGGATGGAACATAAATATGGTTGTTCCATAATGATTGAAATCATATCGGGTCGAAAGCTAAGCAAACATGTACATAGCAAGGCAATCGGGTAG

Coding sequence (CDS)

ATGCAAGTACATAAAGATCCTATGTTTTGTTTCTATTTCAAGGACATAATTCCATTATCAAAGTTTTTAGACTTAGAAGTTAAAGTTCTTAGTCTTAATGCTATTCTTATTTTGTTTGTAGATTTCAATGAGAACAATGATCATAACTTGTTTTGTAATATGAATAAGAATGGTGTTCCTATGTTAAGTGCAAAGATTGAAAGGAAGAAAATAATTGTACCAGATGAACATGTTTTGGCTAACTCTGAAATAGAAGAAACTGCTCCAGAAGAGATAGCTTTATTACCCATAGAGCTTTTTTGTGATGCATTGGTAGAGGAAAGTTCAAAAGCTAAGCTTCAGTCATTGGTGGACAAACCAATTTCTAATTCTTCTTCGAAAGCGATGGAGTCGGTGGAGCAAAAACCAAAGCTATCTCTTACCTATGATGTCGGTTGGAAAGATGCTCTGTCTCATCGTTGTTGTATAAATGGTCGTGATAAAGAACAAGCGGAGAGTGATGCAAGGATGGAACATAAATATGGTTGTTCCATAATGATTGAAATCATATCGGGTCGAAAGCTAAGCAAACATGTACATAGCAAGGCAATCGGGTAG

Protein sequence

MQVHKDPMFCFYFKDIIPLSKFLDLEVKVLSLNAILILFVDFNENNDHNLFCNMNKNGVPMLSAKIERKKIIVPDEHVLANSEIEETAPEEIALLPIELFCDALVEESSKAKLQSLVDKPISNSSSKAMESVEQKPKLSLTYDVGWKDALSHRCCINGRDKEQAESDARMEHKYGCSIMIEIISGRKLSKHVHSKAIG

Homology

[Close]

BLAST of MELO3C032019.2 vs. NCBI nr
Match: XP_004143503.1 (PREDICTED: protein indeterminate-domain 2 [Cucumis sativus] >KGN48816.1 hypothetical protein Csa_6G502050 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 100 FCDALVEESSKAKLQSLVDKPISNSSSKAMESVEQKPKLS 140
           FCDAL EES+KA+ QSLVDKP+SNSS KA+E VE  PKLS
Sbjct: 184 FCDALAEESAKAQPQSLVDKPVSNSSQKAVEPVEPNPKLS 223

[Close]

BLAST of MELO3C032019.2 vs. NCBI nr
Match: XP_008440687.1 (PREDICTED: protein indeterminate-domain 2-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 100 FCDALVEESSKAKLQSLVDKPISNSSSKAMESVEQKPKLS 140
           FCDAL EES+KA+ QSLVDKP+S+SS KAME VE  PKLS
Sbjct: 184 FCDALAEESAKAQPQSLVDKPVSDSSQKAMEPVEPNPKLS 223

[Close]

BLAST of MELO3C032019.2 vs. TrEMBL
Match: tr|A0A0A0KM46|A0A0A0KM46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502050 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 100 FCDALVEESSKAKLQSLVDKPISNSSSKAMESVEQKPKLS 140
           FCDAL EES+KA+ QSLVDKP+SNSS KA+E VE  PKLS
Sbjct: 184 FCDALAEESAKAQPQSLVDKPVSNSSQKAVEPVEPNPKLS 223

[Close]

BLAST of MELO3C032019.2 vs. TrEMBL
Match: tr|A0A1S3B2B0|A0A1S3B2B0_CUCME (protein indeterminate-domain 2-like OS=Cucumis melo OX=3656 GN=LOC103485028 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 100 FCDALVEESSKAKLQSLVDKPISNSSSKAMESVEQKPKLS 140
           FCDAL EES+KA+ QSLVDKP+S+SS KAME VE  PKLS
Sbjct: 184 FCDALAEESAKAQPQSLVDKPVSDSSQKAMEPVEPNPKLS 223

The following BLAST results are available for this feature:

BLAST of MELO3C032019.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143503.1	1.7e-05	75.00	PREDICTED: protein indeterminate-domain 2 [Cucumis sativus] >KGN48816.1 hypothet...	[more]
XP_008440687.1	2.2e-05	75.00	PREDICTED: protein indeterminate-domain 2-like [Cucumis melo]	[more]

BLAST of MELO3C032019.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032019.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032019.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KM46\|A0A0A0KM46_CUCSA	1.1e-05	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G502050 PE=4 SV=1	[more]
tr\|A0A1S3B2B0\|A0A1S3B2B0_CUCME	1.5e-05	75.00	protein indeterminate-domain 2-like OS=Cucumis melo OX=3656 GN=LOC103485028 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032019.2.1	MELO3C032019.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032019.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032019.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032019.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032019.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032019.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032019.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032019.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032019.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032019.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032019.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032019.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032019.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032019.2	Watermelon (97103) v1	medwmB448
MELO3C032019.2	Silver-seed gourd	carmedB0185
MELO3C032019.2	Silver-seed gourd	carmedB0771
MELO3C032019.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032019.2	Watermelon (97103) v2	medwmbB424
MELO3C032019.2	Wax gourd	medwgoB531