MELO3C032018.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032018.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr06 : 13947269 .. 13949949 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCGGCCATGCAACTAGACGAGAGTCGCACCCAAAAAGAACCACCACCTATGGAGATCCTGCTTGGGGCGTTGGAAAAGCCGAGGGAGACAGTCCCTAAGGACACTCTGGGTGTCCCAGAGAAGTGCCATGGTGTGATGCCAAGTAGTTGGCCCAAGTCCTCGTCGAGGCGAAGGAGGACCGACCATGGGATAGAGCCGCCGTCAGAGGCAAAAGCGCATGCAAAGAATGCTTATCGCATGACGCCGCTGGAGTTAGCCAGACTTCGGAAACCATCAAAGATGCTGTGGAATACAGGATTTTGTAGATCTGTACAAGCTCCTTATGGAGCCCATGTCCCTGCCCTAAAGAAGAGGGACAGAAGCCCACAACAGCATATTGACCGTCATACCCAGAGTAAGCTCACGGTCCGGCGTAAATGTCCACTCCCCATGCTCACGAGGCGGGGGGACTGCCCACGTGGAGTGAAGCATCTTCCAAAGTCAGACGACCGACCGAAGCAATGTCGAGTAAGAACAACGGAGGCAAAGGGACTCGAGAAACATTATGTCTCTAGACATGAAGAATACGAGTTCCCCGTGGTGCCGCTTAGTCTTACTGATGCCAAGGGAGGAAAGTGTTGTTCTGTGCAGGGTCAGATGAGCGTGCTGAGTCATGTGGGGGAGTGCCACCAAGGTGGGTCGTCGAGAGAAGAAGACACTCAGTGGAGAGAGAACCTCAAGTGTCAGCTCGCCTTCAATGGTTCAAAGCAAGCCATGATCGAGGGGCCAAGTCTTGGGGCCGTCGATGCGACCAAGACTCCTGAAGTTGAAGCCGAACAATTCAGTTGCGTGCTCGGAGAATACCTGCATCATTGTGTTGATGACAGACAAAAGAATTGGGTTCAACTGCTGAAGGTAGCCCAATTCGGTCATAGTGCTCAAACAGACTCGCCGAGCAAGAGAAGTCCGTTTGAGATTAAAGATAAGAGGCATCCTGTATTGTCGCCTCTCGCTGATGGTCCTTATGTAGAGGACTGCCCTCAAGTTCACAGATTTGAGGAGGAATGGGAACAGATGGCCGACATCGCTCGAGTGTGCCTAGAAGAAGCTTCAAAGCCGATGGAGGAGGGGGTAGATCGAGAGCGATGCCCTCTTGAGTCCGAGTGGAAGACCAAGCTCCCATTTAACGGTGCAACAATGTCGTACGATCATCTGTCAACCTGGACCTGGGGGAAGACAGAGAAGTCGAGCAAGCCCTTGCTGATAGAGTAGGGATTGGTAGAAGGCCCACGAGGGAGGTACATAAATTCCTGGTGCAGCGGGAGAAGCCCCTCGTGGAGGTAACCAGTGGAGGACCTATCGAAGATTTTGAAGCGTGGATGCAGAAGACCGAAGAGCTCCTGCTTCGCCAGTTGACGAGGACGTCAACCGTTTAAGTGGGGGAGAATGTTAGGGACATAATTGTCCAACGTATTATTTACCGCTGGCCGTATGCCCGAATACCCCCAAATCACTTTATCTTTATGTCTTGAAAGTAGTTTAGGTTAATTCTTTCGTTTAGGTGTCGCCGAGTCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCTTGCCAAGACCAAAATTCTCAATATGTACTATAGTGGGTACATGAACAGTCCGACCCCCGCCCAAGCCTTGTCGCACTCTTTGCATGCTGAGTTATTTTCCTTGCAATTGACAGTCTTCAATGCTTTCTTTATGACGTTTTCAACTATTTACTTTCTCTCTCCCGTTTTATAAAAACATTTTCCCNCGGGGAGGGAGGCTACGTCATACCGCGAGTTTGTCCGCGGATTCCGATTATCGAACGACTGACTTGCTGATTGAGCTAAGCAAGTGCCGCACAATCGTGTTGAGAAGTTACGATTGTGACATTGAGCATAGCGCCATGGAGCGTTATAATGCCCTTGTTTTTGACAAAATGCTATTCCTTTATATGCCTTTTGGAGTTTTGTCCCATTCTTGACTCTGTAGGCAAATTTGGTCCATTTTAAACTTTGAATCTCTTTTATAGCTTAAAACCTGAAAATCACTAGCAAATGGCATCAAATCTAACAACATCAAGTAAAAACCATTCTAAATCTAGGGCAAATAACAGACTTTTTAGATGCCTTTTAGTTACCGAGCGAAAGATATGTGGTTTAAATTCTCTCACTTTCATTGTACTGAAAAAACATTGACGTCAATAAAATGCCTTGGTCTTACTTGTCAAAAGATAAATATGGATGAAATTAAACGTAACGAAATATATGTCCAAAGTGAGAAAAAGAGGTTAGACTTAGTCTCAAATAAGTCTAACTAATAGTTGAACTAATATCTAATCCTAACTTACAAAGGATAGGGAAAGATTCATTTAATCCTAATTTTAAGAAGAAAAAATAAAACTCCAACCAGTCTACTTATAAATATATTATTATAACTTCATACGAGAAACATTTAACATGTTATGAGATATGAGGTATTCAAGAACTTAAACTTCAAACTTTTTCTTCATTCTAGAGTGCTTCATTTTTAACTTTTGCATCAGATTCATTTTTCTTTGTTTTACAGGTTATCTCTTCTCTAACCTACAAACATTACAAGAAAGAGGGGGTATACCGATGCATAGATGTGTCGGCAGAAGCCAGGAATGACGTCATGAGAAATGCGTCGTGA

mRNA sequence

ATGATATCGGCCATGCAACTAGACGAGAGTCGCACCCAAAAAGAACCACCACCTATGGAGATCCTGCTTGGGGCGTTGGAAAAGCCGAGGGAGACAGTCCCTAAGGACACTCTGGGTGTCCCAGAGAAGTGCCATGGTGTGATGCCAAGTAGTTGGCCCAAGTCCTCGTCGAGGCGAAGGAGGACCGACCATGGGATAGAGCCGCCGTCAGAGGCAAAAGCGCATGCAAAGAATGCTTATCGCATGACGCCGCTGGAGTTAGCCAGACTTCGGAAACCATCAAAGATGCTGTGGAATACAGGATTTTGTAGATCTGTACAAGCTCCTTATGGAGCCCATGTCCCTGCCCTAAAGAAGAGGGACAGAAGCCCACAACAGCATATTGACCGTCATACCCAGAGTAAGCTCACGGTCCGGCGTAAATGTCCACTCCCCATGCTCACGAGGCGGGGGGACTGCCCACGTGGAGTGAAGCATCTTCCAAAGTCAGACGACCGACCGAAGCAATGTCGAGTAAGAACAACGGAGGCAAAGGGACTCGAGAAACATTATGTCTCTAGACATGAAGAATACGAGTTCCCCGTGGTGCCGCTTAGTCTTACTGATGCCAAGGGAGGAAAGTGTTGTTCTGTGCAGGGTCAGATGAGCGTGCTGAGTCATGTGGGGGAGTGCCACCAAGGTGGGTCGTCGAGAGAAGAAGACACTCAGTGGAGAGAGAACCTCAAGTGTCAGCTCGCCTTCAATGGTTCAAAGCAAGCCATGATCGAGGGGCCAAGTCTTGGGGCCGTCGATGCGACCAAGACTCCTGAAGTTGAAGCCGAACAATTCAGTTGCGTGCTCGGAGAATACCTGCATCATTGTGTTGATGACAGACAAAAGAATTGGGTTCAACTGCTGAAGGTAGCCCAATTCGGTCATAGTGCTCAAACAGACTCGCCGAGCAAGAGAAGTCCGTTTGAGATTAAAGATAAGAGGCATCCTGTATTGTCGCCTCTCGCTGATGGTCCTTATGTAGAGGACTGCCCTCAAGTTCACAGATTTGAGGAGGAATGGGAACAGATGGCCGACATCGCTCGAGTGTGCCTAGAAGAAGCTTCAAAGCCGATGGAGGAGGGGGTAGATCGAGAGCGATGCCCTCTTGAGTCCGAGTGGAAGACCAAGCTCCCATTTAACGGTGTCGCCGAGTCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCTTGCCAAGACCAAAATTCTCAATATGTACTATAGTGGGGAGGCTACGTCATACCGCGAGTTTGTCCGCGGATTCCGATTATCGAACGACTGACTTGCTGATTGAGCTAAGCAAGTGCCGCACAATCGTGTTGAGAAGTTACGATTGTGACATTGAGCATAGCGCCATGGAGCGTTATAATGCCCTTGTTATCTCTTCTCTAACCTACAAACATTACAAGAAAGAGGGGGTATACCGATGCATAGATGTGTCGGCAGAAGCCAGGAATGACGTCATGAGAAATGCGTCGTGA

Coding sequence (CDS)

ATGATATCGGCCATGCAACTAGACGAGAGTCGCACCCAAAAAGAACCACCACCTATGGAGATCCTGCTTGGGGCGTTGGAAAAGCCGAGGGAGACAGTCCCTAAGGACACTCTGGGTGTCCCAGAGAAGTGCCATGGTGTGATGCCAAGTAGTTGGCCCAAGTCCTCGTCGAGGCGAAGGAGGACCGACCATGGGATAGAGCCGCCGTCAGAGGCAAAAGCGCATGCAAAGAATGCTTATCGCATGACGCCGCTGGAGTTAGCCAGACTTCGGAAACCATCAAAGATGCTGTGGAATACAGGATTTTGTAGATCTGTACAAGCTCCTTATGGAGCCCATGTCCCTGCCCTAAAGAAGAGGGACAGAAGCCCACAACAGCATATTGACCGTCATACCCAGAGTAAGCTCACGGTCCGGCGTAAATGTCCACTCCCCATGCTCACGAGGCGGGGGGACTGCCCACGTGGAGTGAAGCATCTTCCAAAGTCAGACGACCGACCGAAGCAATGTCGAGTAAGAACAACGGAGGCAAAGGGACTCGAGAAACATTATGTCTCTAGACATGAAGAATACGAGTTCCCCGTGGTGCCGCTTAGTCTTACTGATGCCAAGGGAGGAAAGTGTTGTTCTGTGCAGGGTCAGATGAGCGTGCTGAGTCATGTGGGGGAGTGCCACCAAGGTGGGTCGTCGAGAGAAGAAGACACTCAGTGGAGAGAGAACCTCAAGTGTCAGCTCGCCTTCAATGGTTCAAAGCAAGCCATGATCGAGGGGCCAAGTCTTGGGGCCGTCGATGCGACCAAGACTCCTGAAGTTGAAGCCGAACAATTCAGTTGCGTGCTCGGAGAATACCTGCATCATTGTGTTGATGACAGACAAAAGAATTGGGTTCAACTGCTGAAGGTAGCCCAATTCGGTCATAGTGCTCAAACAGACTCGCCGAGCAAGAGAAGTCCGTTTGAGATTAAAGATAAGAGGCATCCTGTATTGTCGCCTCTCGCTGATGGTCCTTATGTAGAGGACTGCCCTCAAGTTCACAGATTTGAGGAGGAATGGGAACAGATGGCCGACATCGCTCGAGTGTGCCTAGAAGAAGCTTCAAAGCCGATGGAGGAGGGGGTAGATCGAGAGCGATGCCCTCTTGAGTCCGAGTGGAAGACCAAGCTCCCATTTAACGGTGTCGCCGAGTCACAGTGTGACATTTCGGCTTTTTCATATGCAAGCTTGCCAAGACCAAAATTCTCAATATGTACTATAGTGGGGAGGCTACGTCATACCGCGAGTTTGTCCGCGGATTCCGATTATCGAACGACTGACTTGCTGATTGAGCTAAGCAAGTGCCGCACAATCGTGTTGAGAAGTTACGATTGTGACATTGAGCATAGCGCCATGGAGCGTTATAATGCCCTTGTTATCTCTTCTCTAACCTACAAACATTACAAGAAAGAGGGGGTATACCGATGCATAGATGTGTCGGCAGAAGCCAGGAATGACGTCATGAGAAATGCGTCGTGA

Protein sequence

MISAMQLDESRTQKEPPPMEILLGALEKPRETVPKDTLGVPEKCHGVMPSSWPKSSSRRRRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKKRDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKGLEKHYVSRHEEYEFPVVPLSLTDAKGGKCCSVQGQMSVLSHVGECHQGGSSREEDTQWRENLKCQLAFNGSKQAMIEGPSLGAVDATKTPEVEAEQFSCVLGEYLHHCVDDRQKNWVQLLKVAQFGHSAQTDSPSKRSPFEIKDKRHPVLSPLADGPYVEDCPQVHRFEEEWEQMADIARVCLEEASKPMEEGVDRERCPLESEWKTKLPFNGVAESQCDISAFSYASLPRPKFSICTIVGRLRHTASLSADSDYRTTDLLIELSKCRTIVLRSYDCDIEHSAMERYNALVISSLTYKHYKKEGVYRCIDVSAEARNDVMRNAS
Homology
[Close]
BLAST of MELO3C032018.2 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-23
Identity = 86/210 (40.95%), Postives = 115/210 (54.76%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPRET--VPKDTLGVPEKCHGVMPSSWPKSSSR 60
           MISA+QL +   ++EP  M I +  +E+P ET  VP +   V ++   +MP S PK+   
Sbjct: 582 MISALQLKKGLNREEPTFMAIPM--VEQPVETRDVPPEIQVVMKEYVDIMPDSLPKTLPP 641

Query: 61  RRRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALK 120
           RR  DH IE    AK  AKNAYRM P ELA LRK    L N GF R  +AP+GA V   K
Sbjct: 642 RRGIDHEIELIPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPFGAPVLFQK 701

Query: 121 KRDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAK 180
           K+D + +  ID    +K+TVR K PLP++T   D   G K+  K D R    +VR  E  
Sbjct: 702 KKDGTLRLCIDYRALNKVTVRNKYPLPIITDLFDQLHGAKYFTKLDLRSGYYQVRIAEGD 761

Query: 181 GLEKHYVSRHEEYEFPVVPLSLTDAKGGKC 209
             +   V+R+  +EF V+   LT+A    C
Sbjct: 762 EPKTTCVTRYGAFEFLVMXFGLTNAPATFC 789

[Close]
BLAST of MELO3C032018.2 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-23
Identity = 85/210 (40.48%), Postives = 113/210 (53.81%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPRET--VPKDTLGVPEKCHGVMPSSWPKSSSR 60
           MISA+QL +   ++EP  M+        P ET  VP +   V  +   +MP S PK+   
Sbjct: 582 MISALQLKKGLNREEPTFMQ--------PVETRDVPPEIQVVMREYVDIMPDSLPKTLPP 641

Query: 61  RRRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALK 120
           RR  DH IE    AK  AKNAYRM P +LA LRK    L+NTGF R  +AP+GA V   K
Sbjct: 642 RRGIDHEIELIPGAKPPAKNAYRMAPPKLAELRKQLDELFNTGFIRPAKAPFGASVLFQK 701

Query: 121 KRDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAK 180
           K+D + +  ID    +K+TVR K PLP++T   D   G K+  K D R    +VR  E  
Sbjct: 702 KKDGTLRLCIDYRALNKVTVRNKYPLPIITDLFDQLHGAKYFTKLDLRSGYYQVRIAEGD 761

Query: 181 GLEKHYVSRHEEYEFPVVPLSLTDAKGGKC 209
             +   V+R+  +EF V+P  LT+A    C
Sbjct: 762 EPKTTCVTRYGAFEFLVMPFGLTNAPATFC 783

[Close]
BLAST of MELO3C032018.2 vs. NCBI nr
Match: XP_016902560.1 (PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 7.8e-23
Identity = 80/190 (42.11%), Postives = 100/190 (52.63%), Query Frame = 0 

Query: 19  MEILLGALEKPRETVPKDTLGVPEKCHGVMPSSWPKSSSRRRRTDHGIEPPSEAKAHAKN 78
           M I L + E P ET+ KD L + EK H VMP S PKS   RR  DH IE    AK  AKN
Sbjct: 1   MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKN 60

Query: 79  AYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKKRDRSPQQHIDRHTQSKLTV 138
           AY M P +LA L K    L N GF RS +APY A +   KK+D S +  ID  T +KLT+
Sbjct: 61  AYCMVPPKLAELWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTI 120

Query: 139 RRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKGLEKHYVSRHEEYEFPVVPL 198
             K PL ++T   D     K+  K D R    +V   E    +  YV+R   ++F V+P 
Sbjct: 121 CNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFKFLVMPF 180

Query: 199 SLTDAKGGKC 209
            LT+A    C
Sbjct: 181 GLTNASATFC 190

[Close]
BLAST of MELO3C032018.2 vs. NCBI nr
Match: XP_022972954.1 (uncharacterized protein LOC111471473 [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-22
Identity = 81/208 (38.94%), Postives = 108/208 (51.92%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPRETVPKDTLGVPEKCHGVMPSSWPKSSSRRR 60
           MISA+QL     ++EP  M I L  +    ETVP +   V      +MP S P++   R+
Sbjct: 535 MISAIQLKRGLAREEPTFMVIPLMEVTTNEETVPNEINEVLNDYADIMPESLPQTLPPRQ 594

Query: 61  RTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKKR 120
             DH IE     K  AKNAY+M P ELA LRK    L   GF R  +APYGA V   KK+
Sbjct: 595 GIDHEIELIPGVKPPAKNAYQMAPPELAELRKQLDELLKAGFIRPEKAPYGALVLFQKKK 654

Query: 121 DRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKGL 180
           D + +  ID    +K+TVR K PLP+++   D   G K+  K D R    +VR  E    
Sbjct: 655 DGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEP 714

Query: 181 EKHYVSRHEEYEFPVVPLSLTDAKGGKC 209
           +   V+R+  +EF V+P  LT+A    C
Sbjct: 715 KTTCVTRYGAFEFLVMPFGLTNAPATFC 742

[Close]
BLAST of MELO3C032018.2 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 108/345 (31.30%), Postives = 139/345 (40.29%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPRETVPKDTLGVPEKCHGVMPSSWPKSSSRRR 60
           MISA+QL +   Q EP  M I +       E VP++   V E    V           R 
Sbjct: 553 MISALQLKKGIAQDEPTFMAIPVAEGRNSEELVPREIQRVLEAYADVXXXXXXXXXXPRP 612

Query: 61  RTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKKR 120
             DH IE    AK  AKNAYRM P ELA LRK    L N GF R  +APYGA V   KK+
Sbjct: 613 GIDHEIELLPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKK 672

Query: 121 DRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRV-------- 180
           D S +  ID    +KL VR K PLP++T   D   G K+  K D R    +V        
Sbjct: 673 DXSLRLCIDYRALNKLXVRNKXPLPIITDLFDQLHGAKYFSKLDLRSGYYQVFHEYLDKF 732

Query: 181 -------RTTEAKGLEKHYVSRHEEYEFPVVPLSLTDAKGGKCCSVQGQMSVLSHVGECH 240
                      +  +E+H V  H +  F  +  +    K  KC   Q ++S L HV EC 
Sbjct: 733 VVVYLDDIVVYSPTMEEHQV--HLQLVFEKLKQNQLYVKREKCSFAQERISFLGHVIECG 792

Query: 241 --------------------------------------QGGSSR--------EEDTQWRE 285
                                                 +G S R        +++ +W  
Sbjct: 793 RIGMEDGKVKAIQEWKIPTSITELRSFLGLANYYRRFVEGFSKRTGPLTDLLKKNQKWNW 852

[Close]
BLAST of MELO3C032018.2 vs. TrEMBL
Match: tr|A0A1S4E3K3|A0A1S4E3K3_CUCME (RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107991724 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-23
Identity = 80/190 (42.11%), Postives = 100/190 (52.63%), Query Frame = 0 

Query: 19  MEILLGALEKPRETVPKDTLGVPEKCHGVMPSSWPKSSSRRRRTDHGIEPPSEAKAHAKN 78
           M I L + E P ET+ KD L + EK H VMP S PKS   RR  DH IE    AK  AKN
Sbjct: 1   MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKN 60

Query: 79  AYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKKRDRSPQQHIDRHTQSKLTV 138
           AY M P +LA L K    L N GF RS +APY A +   KK+D S +  ID  T +KLT+
Sbjct: 61  AYCMVPPKLAELWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTI 120

Query: 139 RRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKGLEKHYVSRHEEYEFPVVPL 198
             K PL ++T   D     K+  K D R    +V   E    +  YV+R   ++F V+P 
Sbjct: 121 CNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFKFLVMPF 180

Query: 199 SLTDAKGGKC 209
            LT+A    C
Sbjct: 181 GLTNASATFC 190

[Close]
BLAST of MELO3C032018.2 vs. TrEMBL
Match: tr|A5AXU2|A5AXU2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031912 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 112/411 (27.25%), Postives = 172/411 (41.85%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEK-PRETVPKDTLGVPEKCHGVMPSSWPKSSSRR 60
           M+SAMQ+ +   +KE   +  L    +   RE +PK+  GV ++   VMP   PK    R
Sbjct: 342 MLSAMQVKKRLKRKEVTYLATLKEERDDGSREPMPKEIKGVLDEFKDVMPPELPKRIPPR 401

Query: 61  RRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKK 120
           R  DH IE    AK  A   YRM   +L  LR+  K L + GF +  +APYGA V   KK
Sbjct: 402 REEDHKIELEPGAKPPAMGPYRMALPKLEELRRQLKELLDAGFIQPSKAPYGASVLFQKK 461

Query: 121 RDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKG 180
            D S Q  ID    +K+TV++K P+P++    D     ++  K D R +  +VR  E   
Sbjct: 462 HDGSLQMCIDYRALNKVTVKKKYPIPLIADLFDQLGRARYFTKLDLRSRYYQVRIAEGDE 521

Query: 181 LEKHYVSRHEEYEFPVVPLSLTDAKGGKCCSVQGQM--------------------SVL- 240
           L+   V+R+   +F V+P  LT+A   K  ++  ++                    S+L 
Sbjct: 522 LKTTCVTRYSSCKFLVMPFGLTNAP-TKFYTLMNKIFLPYLDKFVVVYLDDIVIYSSILK 581

Query: 241 SHVGECH----QGGSSR--------EEDTQWRENLKCQLAFNGSKQAMIEGPSLGAVDAT 300
            HV        +G S+R        +++  W  + +CQ AF   K+ + E   L   D T
Sbjct: 582 EHVEHLRKRFIKGYSARAAPLTNFLKKNKAWEWDERCQQAFEDLKKTVTEESVLALPDHT 641

Query: 301 KTPEVEAEQFSCVLGEYLHHCVDDRQKNWVQLLKVAQFGHSAQTDSPSKRSPFEIKDKRH 360
           K  EV  +     +G  L                                        RH
Sbjct: 642 KGFEVHIDASGFAIGGVL-------------------------------------MQDRH 701

Query: 361 PVLSPLADGPYVEDCPQVHRFEEEWEQMADIARVCLEEASKPMEEGVDRER 378
           P+     +  Y        +F + W + ADI R  L++A+K M++  D++R
Sbjct: 702 PI---AFESHYTGRSSTTFKFAKGWHEQADITRSYLDKAAKKMKKWADKKR 711

[Close]
BLAST of MELO3C032018.2 vs. TrEMBL
Match: tr|A5AN22|A5AN22_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021534 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.5e-19
Identity = 97/336 (28.87%), Postives = 135/336 (40.18%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPR-----ETVPKDTLGVPEKCHGVMPSSWPKS 60
           M+SAMQ+ +   +K+       L  L++ R     E +PK+  GV ++   VMP   PK 
Sbjct: 449 MLSAMQVKKGLKRKK----VTYLATLKEERDDGSGEPMPKEIKGVLDEFKDVMPPELPKR 508

Query: 61  SSRRRRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVP 120
              RR  DH IE   E K  A   YRM P EL  LR+  K L + GF +  + PYGA V 
Sbjct: 509 LPPRREEDHKIELEPETKPPAMGPYRMAPPELEELRRQLKELLDAGFIQPSKVPYGAPVL 568

Query: 121 ALKKRDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTT 180
             KK D S +  ID    +K+TV+ K P+P++    D     ++  K D R    +VR  
Sbjct: 569 FQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIVDLFDQLGRARYFTKLDLRSGYYQVRIA 628

Query: 181 EAKGLEKHYVSRHEEYEFPVVPLSLTDA-------------------------------- 240
           E    +   V+R+  YEF V+P  LT+A                                
Sbjct: 629 EGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFYTLMNNIFHPYLDKFVVVYLDDIVIYSN 688

Query: 241 -----------------------KGGKCCSVQGQMSVLSH---VGECHQGGSSREEDTQW 274
                                  K  KC   + ++S L H    G+     S  +     
Sbjct: 689 TLKEHVEHLRKVFKILRQNELYVKKEKCSFAKEEVSFLGHRIRDGKLMMDDSKGKPSRNG 748

[Close]
BLAST of MELO3C032018.2 vs. TrEMBL
Match: tr|A5BDH9|A5BDH9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-19
Identity = 76/212 (35.85%), Postives = 105/212 (49.53%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKP-RETVPKDTLGVPEKCHGVMPSSWPKSSSRR 60
           M+SAMQ+ +   ++E   +  L    +   RE +PK+  GV ++   VMP   PK    R
Sbjct: 563 MLSAMQVKKGLKREEVTYLATLKEERDDGLREPMPKEIEGVLDEFKDVMPPELPKRLPPR 622

Query: 61  RRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVPALKK 120
           R  DH IE    AK  A   YRM P EL  LR+  K L + GF +  +APYGA V   KK
Sbjct: 623 REEDHKIELEPGAKPPAMGPYRMAPPELEELRRQLKELLDVGFIQPSKAPYGAPVLFQKK 682

Query: 121 RDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTTEAKG 180
            D S +  ID    +K+TV+ K P+P++    D      +  K D R    +VR  E   
Sbjct: 683 HDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLGRASYFTKLDLRLGYYQVRIVEGDE 742

Query: 181 LEKHYVSRHEEYEFPVVPLSLTDAKGGKCCSV 212
            +   V+R+  YEF V+P  LT+A    C  V
Sbjct: 743 SKTTCVTRYGSYEFLVMPFGLTNAPATFCTLV 774

[Close]
BLAST of MELO3C032018.2 vs. TrEMBL
Match: tr|A5AZ16|A5AZ16_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016761 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 75/213 (35.21%), Postives = 105/213 (49.30%), Query Frame = 0 

Query: 1   MISAMQLDESRTQKEPPPMEILLGALEKPR-----ETVPKDTLGVPEKCHGVMPSSWPKS 60
           M+S MQ+ +   ++E       L  L++ R     E +PK+  GV ++   VMP   PK 
Sbjct: 520 MLSTMQVKKGLKREE----VTYLATLKEERDDGSGEPMPKEIEGVLDEFKDVMPPELPKR 579

Query: 61  SSRRRRTDHGIEPPSEAKAHAKNAYRMTPLELARLRKPSKMLWNTGFCRSVQAPYGAHVP 120
              RR  DH IE    +K  A   YRM P EL  LR+  K L + GF +  +APYGA V 
Sbjct: 580 LPPRREEDHKIELEPGSKPPAMGPYRMAPPELEELRRQLKELLDAGFIQPSKAPYGAPVL 639

Query: 121 ALKKRDRSPQQHIDRHTQSKLTVRRKCPLPMLTRRGDCPRGVKHLPKSDDRPKQCRVRTT 180
             KK D S +  ID    +K+TV+ K P+P++    D     K+  K D R    +VR  
Sbjct: 640 FQKKHDGSLRMCIDYRALNKVTVKNKYPIPLIADLFDQLGRAKYFTKLDLRSGYYQVRIA 699

Query: 181 EAKGLEKHYVSRHEEYEFPVVPLSLTDAKGGKC 209
           E    +   V+R+  YEF V+P  LT+A    C
Sbjct: 700 EGDEPKTTCVTRYGSYEFLVMPFGLTNAPATFC 728

The following BLAST results are available for this feature:
BLAST of MELO3C032018.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150099.11.2e-2340.95uncharacterized protein LOC111018360 [Momordica charantia][more]
XP_022154605.11.6e-2340.48uncharacterized protein LOC111021829 [Momordica charantia][more]
XP_016902560.17.8e-2342.11PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo][more]
XP_022972954.12.3e-2238.94uncharacterized protein LOC111471473 [Cucurbita maxima][more]
XP_022155185.13.9e-2231.30uncharacterized protein LOC111022320 [Momordica charantia][more]
BLAST of MELO3C032018.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032018.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032018.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E3K3|A0A1S4E3K3_CUCME5.2e-2342.11RNA-directed DNA polymerase homolog OS=Cucumis melo OX=3656 GN=LOC107991724 PE=4... [more]
tr|A5AXU2|A5AXU2_VITVI2.2e-2127.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031912 PE=4 SV=1[more]
tr|A5AN22|A5AN22_VITVI4.5e-1928.87Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021534 PE=4 SV=1[more]
tr|A5BDH9|A5BDH9_VITVI5.9e-1935.85Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001313 PE=4 SV=1[more]
tr|A5AZ16|A5AZ16_VITVI1.3e-1835.21Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016761 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032018.2.1MELO3C032018.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 53..202
e-value: 4.0E-8
score: 35.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..71

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032018.2Watermelon (97103) v2medwmbB424
MELO3C032018.2Wax gourdmedwgoB531
MELO3C032018.2Cucumber (Gy14) v2cgybmedB215
MELO3C032018.2Cucumber (Gy14) v1cgymedB144
MELO3C032018.2Cucurbita maxima (Rimu)cmamedB274
MELO3C032018.2Cucurbita maxima (Rimu)cmamedB496
MELO3C032018.2Cucurbita moschata (Rifu)cmomedB261
MELO3C032018.2Cucurbita moschata (Rifu)cmomedB483
MELO3C032018.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C032018.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C032018.2Wild cucumber (PI 183967)cpimedB239
MELO3C032018.2Cucumber (Chinese Long) v2cumedB238
MELO3C032018.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032018.2Watermelon (Charleston Gray)medwcgB417
MELO3C032018.2Watermelon (97103) v1medwmB448
MELO3C032018.2Silver-seed gourdcarmedB0185
MELO3C032018.2Silver-seed gourdcarmedB0771
MELO3C032018.2Cucumber (Chinese Long) v3cucmedB246