MELO3C032014.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032014.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein Ycf2-like
Location	chr06 : 13875210 .. 13876067 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGACTTAAAACAGAAAGTGTTCGATTCACCAACGGTATGTAAATCTCGTAATTTGTAGTAATTCATATATTCATAATAGTTTTGTTTATAGAGTAATTTGTTCATTTTTGAAACAGCTTGAAGTGTCTCCAATGCTCGCAACCCCAACTAAAATGGGAATGCGATTCTTTGCACCATTCATCGAGACAGAAAAAGACATACTCAAAGAAGCAGAAGATGAGCTTCGAAAGACCAAGAATTCTGACCACATAGCCCATGTTTTGCTGAATAGAGGCATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGAATAACCAACAGAGGATGGAGACAAGTGTGGAAGGTATTCTTGAGTTTCTTAGATGTGTGGAGTTGAAAATGAATAATTGGTTTGAAGAACTAGGACAGAAGATGAATGGAATAATGGAAGCAATAAGGAGCCAACAATGTAGTTCTTCGAGTGGCCAATACACCCATGAATTTATGGTAAGCATGTTGTGTAGACTTTAATAATCTGTGTGCGTGTAATAGAATCTTAACAAATACAGTGTATCTGGTTTGTATTTGTTGCGCAGGGAACAAGGGCGTTTGAACAACACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCGAACGGTGCTTGGAAAAAGGGATGACGGAAGATAAAGACGGAAAAGGGCTTATGGATGAAAGTCGAGCAGAAAGTTCGAGAGGGCAAGATGATGGTCAATCTAAAGTGGCAAAATCAGAGACACCACCAACAGCTGGAGATAAAGATTCTTCGTCGTATAAGGTAA

mRNA sequence

ATGGAAGGACTTAAAACAGAAAGTGTTCGATTCACCAACGGTATAGTAATTTGTTCATTTTTGAAACAGCTTGAAGTGTCTCCAATGCTCGCAACCCCAACTAAAATGGGAATGCGATTCTTTGCACCATTCATCGAGACAGAAAAAGACATACTCAAAGAAGCAGAAGATGAGCTTCGAAAGACCAAGAATTCTGACCACATAGCCCATGTTTTGCTGAATAGAGGCATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGAATAACCAACAGAGGATGGAGACAAGTGTGGAAGGTATTCTTGAGTTTCTTAGATGTGTGGAGTTGAAAATGAATAATTGGTTTGAAGAACTAGGACAGAAGATGAATGGAATAATGGAAGCAATAAGGAGCCAACAATGTAGTTCTTCGAGTGGCCAATACACCCATGAATTTATGGGAACAAGGGCGTTTGAACAACACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCGAACGGTGCTTGGAAAAAGGGATGACGGAAGATAAAGACGGAAAAGGGCTTATGGATGAAAGTCGAGCAGAAAGTTCGAGAGGGCAAGATGATGGTCAATCTAAAGTGGCAAAATCAGAGACACCACCAACAGCTGGAGATAAAGATTCTTCGTCGTATAAGGTAA

Coding sequence (CDS)

ATGGAAGGACTTAAAACAGAAAGTGTTCGATTCACCAACGGTATAGTAATTTGTTCATTTTTGAAACAGCTTGAAGTGTCTCCAATGCTCGCAACCCCAACTAAAATGGGAATGCGATTCTTTGCACCATTCATCGAGACAGAAAAAGACATACTCAAAGAAGCAGAAGATGAGCTTCGAAAGACCAAGAATTCTGACCACATAGCCCATGTTTTGCTGAATAGAGGCATGCCGTCTACAAGTGAGATTAATGTCCTGAGGAAAATGGTAGAGAAGATTGAGAATAACCAACAGAGGATGGAGACAAGTGTGGAAGGTATTCTTGAGTTTCTTAGATGTGTGGAGTTGAAAATGAATAATTGGTTTGAAGAACTAGGACAGAAGATGAATGGAATAATGGAAGCAATAAGGAGCCAACAATGTAGTTCTTCGAGTGGCCAATACACCCATGAATTTATGGGAACAAGGGCGTTTGAACAACACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCGAACGGTGCTTGGAAAAAGGGATGACGGAAGATAA

Protein sequence

MEGLKTESVRFTNGIVICSFLKQLEVSPMLATPTKMGMRFFAPFIETEKDILKEAEDELRKTKNSDHIAHVLLNRGMPSTSEINVLRKMVEKIENNQQRMETSVEGILEFLRCVELKMNNWFEELGQKMNGIMEAIRSQQCSSSSGQYTHEFMGTRAFEQHLDKVEEDQEEDDVEDLNLDSSNRTVLGKRDDGR

Homology

[Close]

BLAST of MELO3C032014.2 vs. NCBI nr
Match: XP_008450225.1 (PREDICTED: protein Ycf2-like [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 126/166 (75.90%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 24  LEVSPMLATPTKMGMRFFAPFIETEKDILKEAEDELRKTKNSDHIAHVLLNRGMPSTSEI 83
           LEVSPMLATPT++ M FFAPFIETEKDILKEAEDELRKTKNSDHIAHV LNRGMPSTSEI
Sbjct: 251 LEVSPMLATPTEVRMPFFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSEI 310

Query: 84  NVLRKMVEKIENNQQRMETSVEGILEFLRCVELKMNNWFEELGQKMNGIMEAIRSQQCSS 143
           NVLRKMVEKIEN+QQRMET+VE                      +  GIMEAIRSQQCSS
Sbjct: 311 NVLRKMVEKIENSQQRMETNVE----------------------EDEGIMEAIRSQQCSS 370

Query: 144 SSGQYTHEFMGTRAFEQHLDKVEEDQEEDDVEDLNLDSSNRTVLGK 190
           S GQYT EFMG RAFE+HLDKV+EDQEEDDVEDL LDSSNRTV  K
Sbjct: 371 SDGQYTQEFMGARAFEEHLDKVKEDQEEDDVEDLKLDSSNRTVFEK 394

[Close]

BLAST of MELO3C032014.2 vs. NCBI nr
Match: XP_011648518.1 (PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 77  MPSTSEINVLRKMVEKIENNQQRMETSVEGILEFLRCVELKMNNWFEELGQKMNGIMEAI 136
           MPSTS+ + L K+VEKI+ NQ+RME S++ ++ F + VE KM+   EE   K+N I+E I
Sbjct: 1   MPSTSQFDGLAKIVEKIKQNQERMEKSMQDMIGFFKFVEEKMDKKLEERHDKVNNILEDI 60

Query: 137 RSQQCSSSSGQYTHEFMGTRAFEQHLDKVEE 168
           + +Q SSS  Q T+E+MG R+FE+HLDKVEE
Sbjct: 61  KRKQPSSSGAQETNEYMGARSFEKHLDKVEE 91

[Close]

BLAST of MELO3C032014.2 vs. NCBI nr
Match: XP_008457273.1 (PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 22  KQLEVSPMLATPTKMGMRFFAPFIETEKDILKEAEDELRKT 63
           K+ +VS MLATP ++G  +FAPF++ EKDILKEAEDELRK+
Sbjct: 125 KKFKVSLMLATPNEVGRPYFAPFLKAEKDILKEAEDELRKS 165

[Close]

BLAST of MELO3C032014.2 vs. TrEMBL
Match: tr|A0A1S3BNT0|A0A1S3BNT0_CUCME (protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.0e-57
Identity = 126/166 (75.90%), Postives = 133/166 (80.12%), Query Frame = 0


Query: 24  LEVSPMLATPTKMGMRFFAPFIETEKDILKEAEDELRKTKNSDHIAHVLLNRGMPSTSEI 83
           LEVSPMLATPT++ M FFAPFIETEKDILKEAEDELRKTKNSDHIAHV LNRGMPSTSEI
Sbjct: 251 LEVSPMLATPTEVRMPFFAPFIETEKDILKEAEDELRKTKNSDHIAHVSLNRGMPSTSEI 310

Query: 84  NVLRKMVEKIENNQQRMETSVEGILEFLRCVELKMNNWFEELGQKMNGIMEAIRSQQCSS 143
           NVLRKMVEKIEN+QQRMET+VE                      +  GIMEAIRSQQCSS
Sbjct: 311 NVLRKMVEKIENSQQRMETNVE----------------------EDEGIMEAIRSQQCSS 370

Query: 144 SSGQYTHEFMGTRAFEQHLDKVEEDQEEDDVEDLNLDSSNRTVLGK 190
           S GQYT EFMG RAFE+HLDKV+EDQEEDDVEDL LDSSNRTV  K
Sbjct: 371 SDGQYTQEFMGARAFEEHLDKVKEDQEEDDVEDLKLDSSNRTVFEK 394

[Close]

BLAST of MELO3C032014.2 vs. TrEMBL
Match: tr|A0A1S3C6E3|A0A1S3C6E3_CUCME (uncharacterized protein DDB_G0286299-like OS=Cucumis melo OX=3656 GN=LOC103497002 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 22  KQLEVSPMLATPTKMGMRFFAPFIETEKDILKEAEDELRKT 63
           K+ +VS MLATP ++G  +FAPF++ EKDILKEAEDELRK+
Sbjct: 125 KKFKVSLMLATPNEVGRPYFAPFLKAEKDILKEAEDELRKS 165

The following BLAST results are available for this feature:

BLAST of MELO3C032014.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450225.1	1.2e-56	75.90	PREDICTED: protein Ycf2-like [Cucumis melo]	[more]
XP_011648518.1	1.4e-15	52.75	PREDICTED: uncharacterized protein LOC105434509 [Cucumis sativus]	[more]
XP_008457273.1	2.8e-05	65.85	PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis melo]	[more]

BLAST of MELO3C032014.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032014.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032014.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BNT0\|A0A1S3BNT0_CUCME	8.0e-57	75.90	protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1	[more]
tr\|A0A1S3C6E3\|A0A1S3C6E3_CUCME	1.9e-05	65.85	uncharacterized protein DDB_G0286299-like OS=Cucumis melo OX=3656 GN=LOC10349700...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032014.2.1	MELO3C032014.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..65
None	No IPR available	COILS	Coil	Coil	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..194

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032014.2	Watermelon (97103) v2	medwmbB424
MELO3C032014.2	Wax gourd	medwgoB531
MELO3C032014.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032014.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032014.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032014.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032014.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032014.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032014.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032014.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032014.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032014.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032014.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032014.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032014.2	Watermelon (97103) v1	medwmB448
MELO3C032014.2	Silver-seed gourd	carmedB0185
MELO3C032014.2	Silver-seed gourd	carmedB0771
MELO3C032014.2	Cucumber (Chinese Long) v3	cucmedB246