MELO3C032010.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032010.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 13711494 .. 13711964 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAGTAAAGTAAGAGATAAGGTACTTAAGTTTTTAGAAAATAAAAGTAAAATTAACTATACCTTTAATGTCGGTTTTAAACCGACATTAAAGCTCTCTCTTTAATATCGATTTAAAACCGACATTAAACATCCGCATTTTAAAAAGTGACACTAAAGTTCCGTTTTTATTTTTCCAACCGACATTAAAGGGCATATTTCTTCTAGTGTAATACTTTATTTCTAATTTTCATAACTTGCTCATTATGCTTAATATTGCATTTTATATTTCCTTGTTGGTGTAGAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

mRNA sequence

ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

Coding sequence (CDS)

ATGGAAGAAATTGATAATGAGAGGGAAGAAATCATGTGGCATGGGATCATGAGAAATAAAATAAGTATTAATAACAACAATACTCTTCGCAAGTGCACATTGCTAGATTGGGGTGGTACAGGAGGGTGGTTGTTGAAGGTCGATGGGCCTCAAATGATCCTAAAGTTACTGTTCACCATGTACAAAGCCTAA

Protein sequence

MEEIDNEREEIMWHGIMRNKISINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKLLFTMYKA

Homology

[Close]

BLAST of MELO3C032010.2 vs. NCBI nr
Match: XP_008439329.1 (PREDICTED: uncharacterized protein LOC103484152 isoform X1 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 2   EEIDNEREEIMWHGIMRNKI-----SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKL 61
           +++ N   + + + I  N I     SIN+NNTLRKCTL        WLLKVDG QMILKL
Sbjct: 37  DQLSNATNDQVVNNIATNPIGTSPPSINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKL 96

[Close]

BLAST of MELO3C032010.2 vs. NCBI nr
Match: XP_008439330.1 (PREDICTED: uncharacterized protein LOC103484152 isoform X2 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-05
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 2   EEIDNEREEIMWHGIMRNKI-----SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKL 61
           +++ N   + + + I  N I     SIN+NNTLRKCTL        WLLKVDG QMILKL
Sbjct: 37  DQLSNATNDQVVNNIATNPIGTSPPSINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKL 96

[Close]

BLAST of MELO3C032010.2 vs. TrEMBL
Match: tr|A0A1S3AZ75|A0A1S3AZ75_CUCME (uncharacterized protein LOC103484152 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484152 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-05
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 2   EEIDNEREEIMWHGIMRNKI-----SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKL 61
           +++ N   + + + I  N I     SIN+NNTLRKCTL        WLLKVDG QMILKL
Sbjct: 37  DQLSNATNDQVVNNIATNPIGTSPPSINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKL 96

[Close]

BLAST of MELO3C032010.2 vs. TrEMBL
Match: tr|A0A1S3AYI6|A0A1S3AYI6_CUCME (uncharacterized protein LOC103484152 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484152 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-05
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 2   EEIDNEREEIMWHGIMRNKI-----SINNNNTLRKCTLLDWGGTGGWLLKVDGPQMILKL 61
           +++ N   + + + I  N I     SIN+NNTLRKCTL        WLLKVDG QMILKL
Sbjct: 37  DQLSNATNDQVVNNIATNPIGTSPPSINDNNTLRKCTLQIGVVQERWLLKVDGSQMILKL 96

The following BLAST results are available for this feature:

BLAST of MELO3C032010.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439329.1	1.6e-05	50.77	PREDICTED: uncharacterized protein LOC103484152 isoform X1 [Cucumis melo]	[more]
XP_008439330.1	1.6e-05	50.77	PREDICTED: uncharacterized protein LOC103484152 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C032010.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032010.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032010.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZ75\|A0A1S3AZ75_CUCME	1.0e-05	50.77	uncharacterized protein LOC103484152 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AYI6\|A0A1S3AYI6_CUCME	1.0e-05	50.77	uncharacterized protein LOC103484152 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032010.2.1	MELO3C032010.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032010.2	Wax gourd	medwgoB531
MELO3C032010.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032010.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032010.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C032010.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C032010.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C032010.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C032010.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C032010.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C032010.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032010.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032010.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032010.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032010.2	Watermelon (97103) v1	medwmB448
MELO3C032010.2	Silver-seed gourd	carmedB0185
MELO3C032010.2	Silver-seed gourd	carmedB0771
MELO3C032010.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032010.2	Watermelon (97103) v2	medwmbB424