MELO3C032009.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C032009.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 13593217 .. 13594181 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGATGACATTCTATGCAGAAATGACGTTGATCCCACAATCGTTGAAAGACCGGTTGTGCGTCATGTCACTGACGACTTCATCGATGATGTGGATGAACACTTGTCACATGCAAGCGATGAGGAATTATAGTGACAAATTAAACCACGTATGCACATATTTATATGTAGTTTATATATTTTGATTCTAGCTATGTGTTCGTATTTGGTTATTGAATGTTTGTTTTCTATGTCCATAGTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGTGAGTTTAAGAATTTTCTTCATTTTAACTTACAAATATTTCATGTAGGGGTTTCAAACTTTATATGTTATTGTCTATTTATTGAGCAGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAATCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAATAAATGGGCACATTCCTATGACGATCGCCCCTGGACCGGAGAAGGCTATTACTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGTGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAACAGGTTTGTTAAGCATCAGATGCTTACGACCTTTAAAGAGTTTCGGGCCGACTATCATAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

mRNA sequence

GAGGATGACATTCTATGCAGAAATGACGTTGATCCCACAATCGTTGAAAGACCGGTTGTGCGTCATGTCACTGACGACTTCATCGATGATGTGGATGAACACTTGTCACATGCAAGCGATGAGGAATTATAGTGACAAATTAAACCACTCATTATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAATCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAATAAATGGGCACATTCCTATGACGATCGCCCCTGGACCGGAGAAGGCTATTACTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGTGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAACAGGTTTGTTAAGCATCAGATGCTTACGACCTTTAAAGAGTTTCGGGCCGACTATCATAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

Coding sequence (CDS)

ATGTCATATCGACGATCAAATTTTATGGAGACGGACGATATGTTCCTCCAGTTTGAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGGTCTTCTTCTCAACAAACGACTCCGACTCCTAGGAGACGTGCGCAATCTCGACTCTTGGAGTTGGAGCGCCACGTTGCAATAAATGGGCACATTCCTATGACGATCGCCCCTGGACCGGAGAAGGCTATTACTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGTGGATGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAACAGGTTTGTTAAGCATCAGATGCTTACGACCTTTAAAGAGTTTCGGGCCGACTATCATAGACATTTCAAAAAGTACAGCGACCCGGAGAAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

Protein sequence

MSYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDED
BLAST of MELO3C032009.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 315.5 bits (807), Expect = 1.2e-82
Identity = 156/172 (90.70%), Postives = 162/172 (94.19%), Query Frame = 0

Query: 9   METDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGHI 68
           METDDMFLQFEDDLDNIAGG SSVGDNT SSSQQ TPTPRRRAQSRLLELERHVAING I
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRRRAQSRLLELERHVAINGCI 60

Query: 69  PMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRLFVLD 128
           PMTIAPG EK I+P+AV FSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQR FVLD
Sbjct: 61  PMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLD 120

Query: 129 FNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDED 181
           FNDQAMNRFV+HQM+TTFKEF+ D HRHFKKYSDPE+ARANPPNALVGRDED
Sbjct: 121 FNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

BLAST of MELO3C032009.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 132/181 (72.93%), Postives = 145/181 (80.11%), Query Frame = 0

Query: 1   MSYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQ-QTTPTPRRRAQSRLLELE 60
           M Y R+NF+ETD MFL+FEDDLDN+AGG SSVGDN GSSSQ   T TPRRR QSRLLELE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELE 60

Query: 61  RHVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKG 120
            HV + G IPM IAPG E  I P+A+RFSQAIGVCV+KTF V  LKW D+ REYIEVVKG
Sbjct: 61  CHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKG 120

Query: 121 DLQRLFVLDFNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDE 180
           +LQR FVLDFNDQA+NRFV+HQMLTTFKEF  D HRHFK      +ARANPPN LVGR E
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHE 175

BLAST of MELO3C032009.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 91/180 (50.56%), Postives = 107/180 (59.44%), Query Frame = 0

Query: 2   SYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQ-QTTPTPRRRAQSRLLELER 61
           S+ R+NF+ETD MFL+F  DLDN+AGG SS+ +N+ SSSQ   T TP+R  QSRLLELE 
Sbjct: 53  SFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELEC 112

Query: 62  HVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGD 121
           +V                                               GREYIEVVK D
Sbjct: 113 YV----------------------------------------------TGREYIEVVKAD 172

Query: 122 LQRLFVLDFNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDED 181
           LQ  FVLDF+DQAMN  V++QM  TFKEF  D H+ FKKYSDPE+ARANPPN LVGR+ED
Sbjct: 173 LQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

BLAST of MELO3C032009.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 0

Query: 13  DMFLQFEDDLDNIAGGLSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGHIPMTI 72
           D++L   D LDN A GLS VG+ + +S    T T RRR  SR LELER++  NG I ++I
Sbjct: 696 DVYLNL-DTLDN-AEGLSLVGETSDASQFTLTATLRRRQHSRNLELERYILQNGKILISI 755

Query: 73  APGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRLFVLDFNDQ 132
               +K I+PH +RFS  I V  R TFP++ LKWVDV +EYIEVVK    + FVLDF D 
Sbjct: 756 PLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK----QWFVLDFKDL 815

Query: 133 AMNRFVKHQM 143
            + RFV+HQM
Sbjct: 816 TLTRFVEHQM 819

BLAST of MELO3C032009.2 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 38  SSSQQTTPTPRRRAQSRLLELERHVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRK 97
           ++SQ    TPRR   SR LEL+R+VA NG I + I PG +K I+P+ V FS  IGV    
Sbjct: 289 NASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTGD 348

Query: 98  TFPVRCLKWVDVGREYIEVVKGDLQRLF 126
           TF VR LKW D+  EYIE++K  LQ  F
Sbjct: 349 TFLVRFLKWADMITEYIELIKSSLQISF 376

BLAST of MELO3C032009.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 7.9e-83
Identity = 156/172 (90.70%), Postives = 162/172 (94.19%), Query Frame = 0

Query: 9   METDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGHI 68
           METDDMFLQFEDDLDNIAGG SSVGDNT SSSQQ TPTPRRRAQSRLLELERHVAING I
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQATPTPRRRAQSRLLELERHVAINGCI 60

Query: 69  PMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRLFVLD 128
           PMTIAPG EK I+P+AV FSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQR FVLD
Sbjct: 61  PMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLD 120

Query: 129 FNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDED 181
           FNDQAMNRFV+HQM+TTFKEF+ D HRHFKKYSDPE+ARANPPNALVGRDED
Sbjct: 121 FNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

BLAST of MELO3C032009.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 8.2e-64
Identity = 132/181 (72.93%), Postives = 145/181 (80.11%), Query Frame = 0

Query: 1   MSYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQ-QTTPTPRRRAQSRLLELE 60
           M Y R+NF+ETD MFL+FEDDLDN+AGG SSVGDN GSSSQ   T TPRRR QSRLLELE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELE 60

Query: 61  RHVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKG 120
            HV + G IPM IAPG E  I P+A+RFSQAIGVCV+KTF V  LKW D+ REYIEVVKG
Sbjct: 61  CHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKG 120

Query: 121 DLQRLFVLDFNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDE 180
           +LQR FVLDFNDQA+NRFV+HQMLTTFKEF  D HRHFK      +ARANPPN LVGR E
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHE 175

BLAST of MELO3C032009.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 91/180 (50.56%), Postives = 107/180 (59.44%), Query Frame = 0

Query: 2   SYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQ-QTTPTPRRRAQSRLLELER 61
           S+ R+NF+ETD MFL+F  DLDN+AGG SS+ +N+ SSSQ   T TP+R  QSRLLELE 
Sbjct: 53  SFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELEC 112

Query: 62  HVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGD 121
           +V                                               GREYIEVVK D
Sbjct: 113 YV----------------------------------------------TGREYIEVVKAD 172

Query: 122 LQRLFVLDFNDQAMNRFVKHQMLTTFKEFRADYHRHFKKYSDPEKARANPPNALVGRDED 181
           LQ  FVLDF+DQAMN  V++QM  TFKEF  D H+ FKKYSDPE+ARANPPN LVGR+ED
Sbjct: 173 LQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

BLAST of MELO3C032009.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 38  SSSQQTTPTPRRRAQSRLLELERHVAINGHIPMTIAPGPEKAITPHAVRFSQAIGVCVRK 97
           ++SQ    TPRR   SR LEL+R+VA NG I + I PG +K I+P+ V FS  IGV    
Sbjct: 289 NASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTGD 348

Query: 98  TFPVRCLKWVDVGREYIEVVKGDLQRLF 126
           TF VR LKW D+  EYIE++K  LQ  F
Sbjct: 349 TFLVRFLKWADMITEYIELIKSSLQISF 376

BLAST of MELO3C032009.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 2  SYRRSNFMETDDMFLQFEDDLDNIAGGLSSVGDNTGSSSQQT-TPTPRRRAQSRLLELER 61
          SY R NF+ETD MFL+FED LDN  GG SSVGDN GSSSQQ  T TPRR  QSRLL L R
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGLLR 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34071.11.2e-8290.70CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901035.11.2e-6372.93PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016901155.13.3e-3250.56PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_011648549.11.5e-2151.54PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
XP_016903164.13.4e-1351.14PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME7.9e-8390.70CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME8.2e-6472.93uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME2.2e-3250.56LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S4E4L2|A0A1S4E4L2_CUCME2.3e-1351.14uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=... [more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME2.8e-1171.67uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032009.2.1MELO3C032009.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..180

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None