MELO3C032005.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032005.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr06 : 13092528 .. 13094746 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATTGGGAATACCCTTATTCCCGACGCCATAAAGGGGATCTCCCGACGTTTTTGTGCTACATCGTGAGATCCCCTTTATAAACGTTTCAATTCTGTTTTACACAGAACTGAAAACGAAAGGGAAAGAGAGAAGAGAGAAACGAAAATTCGTCACCATCCGTAGCTCGCCGCTGTCTGTTTCGTCGTCGTTACTGTCCCTCGTCGCCGTCTGCCACCTTAGGTAAGTTTAAATATAAAGTTTGTTTAGTTTAAATATAAGTTTTAGGGTTTTTTTTAAGAAAATTGTTTTAGGATTTTGTTTTGGAATAGATTTTTGTTTGTTAAATGTATTTTTGTATAGAATGTGTGTAATTTGTGGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTGTAGTTATGGTAGCTTGTTTGTGTTGAATAGCTTATTGAATGTTTGTTTTCTATGTCCACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGACGGACGCTATGTTTCTTGAGTTTAAGGACGATTTAGATAACATCGCGGGAGGGTCGTCGTCTGTGGGCGACAATGCGGGTGAGTCTAAGAATTTTCTTCATTTTAACTTACAATTATTTCATGTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGCAAAATCTTCTTCTCAATAGCTTGCGACTTCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTACAATAAATGAGCACATTTCGATGACGATCGCCCCTGAGCAAAAAAGCCTATTTTCCCACACGCCGTTCGCTTCAGTTAGGCGAGAGGCCTGTGCGTGTGAAAGACATTTTTCGTCCGCTGCCTTAAGTGAGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCAGGTAATTAAGTGCACTACACATTTATGATTTCGTTTGAAACATATCTAAGTTTAACCAATCTAACGTGTTATGTTTGTAATGTATAGCGACTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTTCGGGACGACGAGTGCGAGCAGTTCCTCGACATCTTGTTTGCAGTCCACACAAACTGTAGAGATTGAATTACAAGCTAAACTTAATGAAACTTTGGAACGGATTGAAGTGCAAGATAAAAATCATCAAGCGTTAGTTTCACAAGTGGAACGAATGCAAAAGCTGATAGAAGACTTAACTCGTGCACAATAA

mRNA sequence

ATGAGCATTGGGAATACCCTTATTCCCGACGCCATAAAGGGGATCTCCCGACAACTGAAAACGAAAGGGAAAGAGAGAAGAGAGAAACGAAAATTCGTCACCATCCGTAGCTCGCCGCTGTCTGTTTCGTCGTCGTTACTGTCCCTCGTCGCCGTCTGCCACCTTAGAATGTGTCTTATTGAATGTTTGTTTTCTATGTCCACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGACGGACGCTATGTTTCTTGAGTTTAAGGACGATTTAGATAACATCGCGGGAGGGTCGTCGTCTGTGGGCGACAATGCGGGTGAGTCTAAGAATTTTCTTCATTTTAACTTACAATTATTTCATCTTGCGACTTCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTACAATAAATGAGCACATTTCGATGACGATCGCCCCTGAGCAAAAAAGCCTATTTTCCCACACGCCGTTCGCTTCAGTTAGGCGAGAGGCCTGTGCGTGTGAAAGACATTTTTCGTCCGCTGCCTTAAGTGAGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCAGATGCTCACGACCTTTAAAGAGTTTCGGGACGACGAGTGCGAGCAGTTCCTCGACATCTTGTTTGCAGTCCACACAAACTGTAGAGATTGAATTACAAGCTAAACTTAATGAAACTTTGGAACGGATTGAAGTGCAAGATAAAAATCATCAAGCGTTAGTTTCACAAGTGGAACGAATGCAAAAGCTGATAGAAGACTTAACTCGTGCACAATAA

Coding sequence (CDS)

ATGAGCATTGGGAATACCCTTATTCCCGACGCCATAAAGGGGATCTCCCGACAACTGAAAACGAAAGGGAAAGAGAGAAGAGAGAAACGAAAATTCGTCACCATCCGTAGCTCGCCGCTGTCTGTTTCGTCGTCGTTACTGTCCCTCGTCGCCGTCTGCCACCTTAGAATGTGTCTTATTGAATGTTTGTTTTCTATGTCCACAGCCATTATGTCATCGTCATACCCACGTAATAATTTTATGGAGACGGACGCTATGTTTCTTGAGTTTAAGGACGATTTAGATAACATCGCGGGAGGGTCGTCGTCTGTGGGCGACAATGCGGGTGAGTCTAAGAATTTTCTTCATTTTAACTTACAATTATTTCATCTTGCGACTTCGACTCCTAGGAGACGTGCGCAGTCTCGACTCTTAGAGTTGAAGCGCCACGTTACAATAAATGAGCACATTTCGATGACGATCGCCCCTGAGCAAAAAAGCCTATTTTCCCACACGCCGTTCGCTTCAGTTAGGCGAGAGGCCTGTGCGTGTGAAAGACATTTTTCGTCCGCTGCCTTAAGTGAGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAACCTCCAGATGCTCACGACCTTTAAAGAGTTTCGGGACGACGAGTGCGAGCAGTTCCTCGACATCTTGTTTGCAGTCCACACAAACTGTAGAGATTGAATTACAAGCTAAACTTAATGAAACTTTGGAACGGATTGAAGTGCAAGATAAAAATCATCAAGCGTTAGTTTCACAAGTGGAACGAATGCAAAAGCTGATAGAAGACTTAACTCGTGCACAATAA

Protein sequence

MSIGNTLIPDAIKGISRQLKTKGKERREKRKFVTIRSSPLSVSSSLLSLVAVCHLRMCLIECLFSMSTAIMSSSYPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPRRRAQSRLLELKRHVTINEHISMTIAPEQKSLFSHTPFASVRREACACERHFSSAALSEQTLGENTLRSSRATSRCSRPLKSFGTTSASSSSTSCLQSTQTVEIELQAKLNETLERIEVQDKNHQALVSQVERMQKLIEDLTRAQ

Homology

[Close]

BLAST of MELO3C032005.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-16
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 75  YPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPRRRAQ 134
           Y RNNF+ETD MFLEF+DDLDN+AGGSSSVGDNAG S             AT TPRRR Q
Sbjct: 3   YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQ---------PPATQTPRRRVQ 62

Query: 135 SRLLELKRHVTINEHISMTIAP 157
           SRLLEL+ HV +   I M IAP
Sbjct: 63  SRLLELECHVVVYGCIPMMIAP 75

[Close]

BLAST of MELO3C032005.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 81  METDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPRRRAQSRLLEL 140
           METD MFL+F+DDLDNIAGGSSSVGDN   S             AT TPRRRAQSRLLEL
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSS----------QQATPTPRRRAQSRLLEL 60

Query: 141 KRHVTINEHISMTIAP 157
           +RHV IN  I MTIAP
Sbjct: 61  ERHVAINGCIPMTIAP 66

[Close]

BLAST of MELO3C032005.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/75 (60.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 71  MSSSYPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPR 130
           MSSSYPR+NF+ETD MFLEF+D LDN  GGSSSVGDN G S              T TPR
Sbjct: 1   MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQ---------QPGTLTPR 60

Query: 131 RRAQSRLLELKRHVT 146
           R  QSRLL L R +T
Sbjct: 61  RHVQSRLLGLLRVLT 66

[Close]

BLAST of MELO3C032005.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-11
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 60  IECLFSMSTAIMSSSYPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNL 119
           ++ L   S     SS+PRNNF+ETD MFL+F  DLDN+AGGSSS+ +N+  S        
Sbjct: 39  LDLLLEFSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQ------ 98

Query: 120 QLFHLATSTPRRRAQSRLLELKRHVTINEHISMTIAPEQ 159
                AT TP+R  QSRLLEL+ +VT  E+I +  A  Q
Sbjct: 99  ---PSATLTPKRHTQSRLLELECYVTGREYIEVVKADLQ 128

[Close]

BLAST of MELO3C032005.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 52/82 (63.41%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 75  YPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPRRRAQ 134
           Y RNNF+ETD MFLEF+DDLDN+AGGSSSVGDNAG S             AT TPRRR Q
Sbjct: 3   YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQ---------PPATQTPRRRVQ 62

Query: 135 SRLLELKRHVTINEHISMTIAP 157
           SRLLEL+ HV +   I M IAP
Sbjct: 63  SRLLELECHVVVYGCIPMMIAP 75

[Close]

BLAST of MELO3C032005.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 81  METDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPRRRAQSRLLEL 140
           METD MFL+F+DDLDNIAGGSSSVGDN   S             AT TPRRRAQSRLLEL
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSS----------QQATPTPRRRAQSRLLEL 60

Query: 141 KRHVTINEHISMTIAP 157
           +RHV IN  I MTIAP
Sbjct: 61  ERHVAINGCIPMTIAP 66

[Close]

BLAST of MELO3C032005.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 45/75 (60.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 71  MSSSYPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNLQLFHLATSTPR 130
           MSSSYPR+NF+ETD MFLEF+D LDN  GGSSSVGDN G S              T TPR
Sbjct: 1   MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQ---------QPGTLTPR 60

Query: 131 RRAQSRLLELKRHVT 146
           R  QSRLL L R +T
Sbjct: 61  RHVQSRLLGLLRVLT 66

[Close]

BLAST of MELO3C032005.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 60  IECLFSMSTAIMSSSYPRNNFMETDAMFLEFKDDLDNIAGGSSSVGDNAGESKNFLHFNL 119
           ++ L   S     SS+PRNNF+ETD MFL+F  DLDN+AGGSSS+ +N+  S        
Sbjct: 39  LDLLLEFSVISTISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQ------ 98

Query: 120 QLFHLATSTPRRRAQSRLLELKRHVTINEHISMTIAPEQ 159
                AT TP+R  QSRLLEL+ +VT  E+I +  A  Q
Sbjct: 99  ---PSATLTPKRHTQSRLLELECYVTGREYIEVVKADLQ 128

The following BLAST results are available for this feature:

BLAST of MELO3C032005.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901035.1	5.1e-16	63.41	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
ADN34071.1	1.6e-14	67.11	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016902990.1	4.4e-12	60.00	PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo]	[more]
XP_016901155.1	3.7e-11	46.46	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]

BLAST of MELO3C032005.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032005.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032005.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	3.3e-16	63.41	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|E5GC72\|E5GC72_CUCME	1.1e-14	67.11	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4E4T7\|A0A1S4E4T7_CUCME	2.9e-12	60.00	uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	2.5e-11	46.46	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032005.2.1	MELO3C032005.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 253..273

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032005.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C032005.2	Watermelon (97103) v2	medwmbB424
MELO3C032005.2	Wax gourd	medwgoB531
MELO3C032005.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C032005.2	Cucumber (Gy14) v1	cgymedB144
MELO3C032005.2	Cucumber (Gy14) v1	cgymedB379
MELO3C032005.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C032005.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C032005.2	Melon (DHL92) v3.6.1	medmedB091
MELO3C032005.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C032005.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C032005.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C032005.2	Watermelon (97103) v1	medwmB448
MELO3C032005.2	Watermelon (97103) v1	medwmB472