MELO3C032000.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032000.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUDP-glucose 4-epimerase 1-like
Locationchr06 : 13082925 .. 13084017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGGTAAGGTGAAGATTTTGGGAATTTATATTTTTGTTTAGTATTCTGATGGAATTTATCGAACGTATACTAAGTGTTTGCTTTAAGTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGGTAATGGCCATGTCGGATTGAGAGTTAAGTGTAGTTGTCAGTGATCCCTGTTAGGAGGGGTTATTGGGGTAATAAGTTCCAATATCAAAGGTAACCAGCATAAAGAGATTGTCCATAAAGGTTTGGGATAAACTATCCTCCAAGGTATATGCTTCAATTATTCTTTATAGAATTCTATTGATTGGTATATTTCTACTTGGTCTTAATTAGGATTTCATCCTTGTGCGCTACTTTGTACTTAAATTGTTCTCGACGTTCTTTTGAGCTCTAAATTCATATTTTTCCTATGACTGACTATTGTTTTTGCATTCTTGAAATTTAGCATGGTAGGGGCCCGAAACTGACAAATGAAGATATTTGTATGGAATACCTTATCACTGGTGCTTGAAATGTTGTTTGTGCTTACAGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATGTAAATGTCTGACCTTGTCATTTGTTGATTTCATTTCTAATTACTTGTAATTTTGTTGTTCTCACGACTGTAGTTGTTTTGTCTCTAAAGCATGTATATTACTTTATTTTGAAAAGAAACTATTTTGTTGAATTAAACAAAATACGGGCGAGGAAAGCTTCAACTTAAATTTTGGAAGCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

mRNA sequence

ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

Coding sequence (CDS)

ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

Protein sequence

MAVFSDVVTGSMLLNTYTRILANEELGLRPSLSLATLQGPENINERNCIKCTFGNYPNGTYVVSMTWYFFKILEFSCHTALLMLLIGFASCLNLQLKPFHSIEKKIMVTEGPDGSRKSEKEQYDPAKQKTIAHLIKNVL
Homology
[Close]
BLAST of MELO3C032000.2 vs. NCBI nr
Match: XP_016903360.1 (PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903361.1 PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903362.1 PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 6.3e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 37 LQGPENINERNCIKCTFGNYPNGTYVVSMT 67
          LQG ENINERNC+KCTFGNYPNGTYVVS T
Sbjct: 11 LQGLENINERNCVKCTFGNYPNGTYVVSRT 40

[Close]
BLAST of MELO3C032000.2 vs. TrEMBL
Match: tr|A0A1S4E5V7|A0A1S4E5V7_CUCME (UDP-glucose 4-epimerase 1-like OS=Cucumis melo OX=3656 GN=LOC103502930 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 37 LQGPENINERNCIKCTFGNYPNGTYVVSMT 67
          LQG ENINERNC+KCTFGNYPNGTYVVS T
Sbjct: 11 LQGLENINERNCVKCTFGNYPNGTYVVSRT 40

The following BLAST results are available for this feature:
BLAST of MELO3C032000.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903360.16.3e-0790.00PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903361.1 PREDICT... [more]
BLAST of MELO3C032000.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032000.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032000.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5V7|A0A1S4E5V7_CUCME4.2e-0790.00UDP-glucose 4-epimerase 1-like OS=Cucumis melo OX=3656 GN=LOC103502930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032000.2.1MELO3C032000.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032000.2Cucumber (Gy14) v2cgybmedB215
MELO3C032000.2Cucumber (Gy14) v1cgymedB144
MELO3C032000.2Cucumber (Gy14) v1cgymedB379
MELO3C032000.2Wild cucumber (PI 183967)cpimedB239
MELO3C032000.2Cucumber (Chinese Long) v2cumedB238
MELO3C032000.2Melon (DHL92) v3.6.1medmedB091
MELO3C032000.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032000.2Watermelon (Charleston Gray)medwcgB413
MELO3C032000.2Watermelon (Charleston Gray)medwcgB417
MELO3C032000.2Watermelon (97103) v1medwmB448
MELO3C032000.2Watermelon (97103) v1medwmB472
MELO3C032000.2Cucumber (Chinese Long) v3cucmedB246
MELO3C032000.2Watermelon (97103) v2medwmbB424
MELO3C032000.2Wax gourdmedwgoB531