MELO3C032000.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C032000.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUDP-glucose 4-epimerase 1-like
Locationchr06 : 13082925 .. 13084017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGGTAAGGTGAAGATTTTGGGAATTTATATTTTTGTTTAGTATTCTGATGGAATTTATCGAACGTATACTAAGTGTTTGCTTTAAGTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGGTAATGGCCATGTCGGATTGAGAGTTAAGTGTAGTTGTCAGTGATCCCTGTTAGGAGGGGTTATTGGGGTAATAAGTTCCAATATCAAAGGTAACCAGCATAAAGAGATTGTCCATAAAGGTTTGGGATAAACTATCCTCCAAGGTATATGCTTCAATTATTCTTTATAGAATTCTATTGATTGGTATATTTCTACTTGGTCTTAATTAGGATTTCATCCTTGTGCGCTACTTTGTACTTAAATTGTTCTCGACGTTCTTTTGAGCTCTAAATTCATATTTTTCCTATGACTGACTATTGTTTTTGCATTCTTGAAATTTAGCATGGTAGGGGCCCGAAACTGACAAATGAAGATATTTGTATGGAATACCTTATCACTGGTGCTTGAAATGTTGTTTGTGCTTACAGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATGTAAATGTCTGACCTTGTCATTTGTTGATTTCATTTCTAATTACTTGTAATTTTGTTGTTCTCACGACTGTAGTTGTTTTGTCTCTAAAGCATGTATATTACTTTATTTTGAAAAGAAACTATTTTGTTGAATTAAACAAAATACGGGCGAGGAAAGCTTCAACTTAAATTTTGGAAGCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

mRNA sequence

ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

Coding sequence (CDS)

ATGGCGGTGTTTTCGGATGTAGTGACGGGATCTATGCTGTTGAATACGTATACAAGGATTTTAGCGAATGAAGAACTAGGTTTAAGGCCTTCGTTGTCGTTGGCAACGCTACAGGGACCGGAGAATATCAATGAAAGAAATTGCATTAAGTGCACTTTCGGAAATTATCCAAATGGAACATATGTTGTTTCTATGACATGGTATTTTTTCAAAATTCTTGAATTCTCTTGTCATACTGCTTTGCTAATGCTTCTTATTGGATTTGCTTCTTGCTTGAATCTGCAATTAAAACCTTTCCATTCCATAGAGAAGAAAATCATGGTTACGGAAGGTCCGGATGGATCAAGAAAGAGTGAGAAAGAGCAATACGATCCTGCAAAACAGAAAACAATTGCCCATCTCATTAAAAATGTTCTATGA

Protein sequence

MAVFSDVVTGSMLLNTYTRILANEELGLRPSLSLATLQGPENINERNCIKCTFGNYPNGTYVVSMTWYFFKILEFSCHTALLMLLIGFASCLNLQLKPFHSIEKKIMVTEGPDGSRKSEKEQYDPAKQKTIAHLIKNVL
Homology
[Close]
BLAST of MELO3C032000.2 vs. NCBI nr
Match: XP_016903360.1 (PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903361.1 PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903362.1 PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 6.3e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 37 LQGPENINERNCIKCTFGNYPNGTYVVSMT 67
          LQG ENINERNC+KCTFGNYPNGTYVVS T
Sbjct: 11 LQGLENINERNCVKCTFGNYPNGTYVVSRT 40

[Close]
BLAST of MELO3C032000.2 vs. TrEMBL
Match: tr|A0A1S4E5V7|A0A1S4E5V7_CUCME (UDP-glucose 4-epimerase 1-like OS=Cucumis melo OX=3656 GN=LOC103502930 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 37 LQGPENINERNCIKCTFGNYPNGTYVVSMT 67
          LQG ENINERNC+KCTFGNYPNGTYVVS T
Sbjct: 11 LQGLENINERNCVKCTFGNYPNGTYVVSRT 40

The following BLAST results are available for this feature:
BLAST of MELO3C032000.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903360.16.3e-0790.00PREDICTED: UDP-glucose 4-epimerase 1-like [Cucumis melo] >XP_016903361.1 PREDICT... [more]
BLAST of MELO3C032000.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C032000.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C032000.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5V7|A0A1S4E5V7_CUCME4.2e-0790.00UDP-glucose 4-epimerase 1-like OS=Cucumis melo OX=3656 GN=LOC103502930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032000.2.1MELO3C032000.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C032000.2Wild cucumber (PI 183967)cpimedB239
MELO3C032000.2Cucumber (Chinese Long) v2cumedB238
MELO3C032000.2Melon (DHL92) v3.6.1medmedB091
MELO3C032000.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C032000.2Watermelon (Charleston Gray)medwcgB413
MELO3C032000.2Watermelon (Charleston Gray)medwcgB417
MELO3C032000.2Watermelon (97103) v1medwmB448
MELO3C032000.2Watermelon (97103) v1medwmB472
MELO3C032000.2Cucumber (Chinese Long) v3cucmedB246
MELO3C032000.2Watermelon (97103) v2medwmbB424
MELO3C032000.2Wax gourdmedwgoB531
MELO3C032000.2Cucumber (Gy14) v2cgybmedB215
MELO3C032000.2Cucumber (Gy14) v1cgymedB144
MELO3C032000.2Cucumber (Gy14) v1cgymedB379