MELO3C031997.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C031997.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr06 : 12963581 .. 12967206 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTGGAATTTCATTGTTATCCTCTCATATCCCTGTTCACTCACTTCCTCCAATTCACTCTACTGATGGTAGTCACATGTCTATTTCTCACATTGGCACTGTTAATACACCCACCATAAAACTTTCCAACACCTACCATGTCCCCAATCTTACATTCAACCTAGCCTCTGTTGGCCAATTATGTAACATTGGACTTACTATTGTCTTTTCTTCTCATGGTTGTTAGGTTTAGGACTCTCAGACGGGACAAGTGATTGGTACGGGACAGAAGGTGGGTCGATTATTTGAGCTCACATCTCTTCAGCACTCTCATATGTTTCCCGCCATCTCTGCTCCAGCCACTGATGACACTATATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTGATAAACTCCGTAGTTTAGCTTCTAATGGTCATTTGAATAATGTCTCTAAGTTTAGTACTCTTGACTATTTAAATTGCAAACTAGCCAAACAACTTGCTTTGTCCTTTCCGAACTCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGACATTTGGGGACCTGCTCCATGTGCTACGGTCAATGGTTATCTATATTTTGTTTTATTTATTGATGACTATTCTCGATTTACTTGGATTTACTTTCTTAAAAATCGTTCCTCTTTATATCAAATAGATGTTGAATTTGTCAATATGGTCCAAACACAATTTTCCAGCACTATTAAAATTCTTCGCACCGATAATGCAATGAAATACAAGGACTCTCGTTTTCTTTCCTTCCTTACCCAACAAGGCACCTTGATCCAACGCTCCTGTCCTCACACCTCCCAGCAAAATGGACGAGCAGAACGTAAACACCGTCACATTCTAGACTCTGTTCGTGCTCAACTCCTCTCTGCCTCATGCCCTAAAAATTTTTGGGGAGAAGCTGCCATCACCTCTGTTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTcCCCATTTGAACGCCTACACGGTACTCCTCCCTCCTACTCTAATCTCAAAATCTTTGGTTATGAATGTTTTGTATTATTACACCCTCATGAACATACAAAACTTGAACCTCGTGCTCGTCTATGTTGTTTCTTGGGTTATGGCACTGAACACAAAGGTTTTCGTTGTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGTCATGTCACATTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTTCTCAATCATTCTTTACTGATCCTTCTACTACTCTCTTCCCTACACCTGATTCACCACCCAACACTATCCCTTATCCTCCACTCTCATCTGAGCTCACTCCATCTCTACGCTCCCGGATCTTCCATCTATCTCCTTTGAGGAATCTGAACCTACGCCTGTCCGACGATCCACTCGGGTAAGAGAAACTCCTTCTCATCTCAAAGAGTACCATTGCTTCTCTACTATCATGTCTTTAGATGAACCTTCCTCATATAAGGAAGCTAGTACTAACCCCTTGTGGCAGCAAGCAATGAATGATGAACTTCAAGCCTTAGAGAAAACCCATACTTGGGATTATGTTGATCTACCTCCTGGTAAGAAACCAATTGGTTGTAAATGGATTTTTAAAATAAAAACACACTCTGATGGCTTTATTGAACGATACAAAGCACGACTTGTTGCTAAAGGTTATTCTTAAGAATATGGTATTGATTATGAAGAAACGTTTGTCCCAGTAGCTCGAATGACATCTGTCTGTAGTCTGTTAGCCATTGCTGCTGCCAAACAATGGCCCCTTCTTCAAATGGATGTTAAAAATGCGTTCCTAAATGGAACCATATCTGAAGAAGTTTACATGACGCCACCACCTGGCACTACTCCACCACCGCAGAAAGTATATATCCTTCGTCGTGCTCTCTATGGTCTCAAACAAGCTCCTCGAGCTTGGTTTGCAACATTTAGCTCCACTATTACCCAACTTGGGTTCACCTCCAGTACTCATGATTCCGCCTTATTTTCTCGTCAGACATCTACTAGTATTGTCCTCTTGCTTTTGTATGTTGATGACATGATCATTACAGGAGATGACCCTCAAGCCATATCTGATTTACAACGTTACCTTGGTCAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTACTTTCTTGGTCTTGAGATCTCATCGTCACCCAGTGGCTACTATTTATCTCAAGCAAAATATGCTTCTGACCTCATCAATCGATCTGGTATTACTGACTCTGCTACATCCTTAACATCTTTGGATCCCAATGTGTGCCTCACTCCTTTTGATGGTGTCCCTCTTGAGGACCCCACCTTATATCGGCAACTTGTTGGCAGCTTAATTTACTTAACTGTAACTCGTCCAGATATTGCATATGTTGTTCACATTGTTAGTCAGTTCATGGCTGCTCCTCGCACAATTCACTTCACTGTCGTTCTTCGTATTCTTCGCTACATTAAAGGCACTTTGGGCCATGGTCTACAGTTCTCCTCCCAATCATCTCTGGTTCTCTCTGGATTCTCTGATGCTGATTGGGCAGGTGATCCTACTGATCGACGATCTACAATTGGTTATTGCTTTTATCTAGGTAATGCTTTTATCTCCCGGAGAAGCAAGAAACAATCTGTTGTTTCCCGTTCCAGCACCGAGTCTGAATATCGTACTCTAGCTGATGTCACTTCAGAATTACTATGGCTTTGTTGGCTTCTTACTGATATGGGGGGCCCCCAGACATCACCCACTATTCTTCATTGTGATAATCGAAGTGTTATTCAGATTGCACACAGTGATGTATTCCATGAACGAACAAAGCACATTGAGAATGATTGTCACTTTGTTCGCCATCACCTTTAGAGCAACACTCTTCATCTCAAATCCATCTCTACCACCAATCAACCTGCAGATATCTTCACCAAAGCTCTGCATTCTCCTCGTTTCACCCAACTAATTCACAAACTCAAGGTGGTCTCAACTCTCCCATCTTGAATTGGAGGGAGGGTATTAACGAAATTAGATCCTATAATTTAGGAGAAAATTACTCTATATTTAACACCAATATTCTTTCCTTGTTTGGTACCATTTGTGTGTATAAATTGTACATGTATACTGTAATATTCTTCAAGAAAATACCAAAAAATTACACAACCTATTACTTTTCGTTTGATTATCAGTGTATTGTACTTAGAATAGTGTATTTATATTAATATGTTTATACCTTGAATTTTGTTCTTCTTTTTCTTCTTACTAAGTTCAAAAATTTTGTTGGATAAATATGGAACCAATTTTGTGATAATAGTGTATTCATGTTTATTTAATTATGTTTAGATTCACTATCTTCGATTGACTTTAGAAAGGGTGTGTCTATTGTCCTGGAATAACTTTATACAACAATTTTGGTGTAAATAACCTTTGATATGAAATCTACTCTGATTTAGCAAAAGAGGTATCTATGTAAATTGATATTCAAAGTTGAAGCTTTAATATATAAATAATAACCCTTTTGACTAATTATTTTAAATTTTAACGGTAGACACTTCAGCCTTTTCGGGGAATGATTGGGTTATAAGTGGGAATGGACTGTGA

mRNA sequence

ATGACTTCTGGAATTTCATTGTTATCCTCTCATATCCCTGTTCACTCACTTCCTCCAATTCACTCTACTGATGGTAGTCACATGTCTATTTCTCACATTGGCACTGTTAATACACCCACCATAAAACTTTCCAACACCTACCATGTCCCCAATCTTACATTCAACCTAGCCTCTGTTGGCCAATTATGTAACATTGGACTTACTATTGTCTTTTCTTCTCATGGTTTAGGACTCTCAGACGGGACAAGTGATTGGTACGGGACAGAAGATTCACTATCTTCGATTGACTTTAGAAAGGACACTTCAGCCTTTTCGGGGAATGATTGGGTTATAAGTGGGAATGGACTGTGA

Coding sequence (CDS)

ATGACTTCTGGAATTTCATTGTTATCCTCTCATATCCCTGTTCACTCACTTCCTCCAATTCACTCTACTGATGGTAGTCACATGTCTATTTCTCACATTGGCACTGTTAATACACCCACCATAAAACTTTCCAACACCTACCATGTCCCCAATCTTACATTCAACCTAGCCTCTGTTGGCCAATTATGTAACATTGGACTTACTATTGTCTTTTCTTCTCATGGTTTAGGACTCTCAGACGGGACAAGTGATTGGTACGGGACAGAAGATTCACTATCTTCGATTGACTTTAGAAAGGACACTTCAGCCTTTTCGGGGAATGATTGGGTTATAAGTGGGAATGGACTGTGA

Protein sequence

MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCNIGLTIVFSSHGLGLSDGTSDWYGTEDSLSSIDFRKDTSAFSGNDWVISGNGL
BLAST of MELO3C031997.2 vs. NCBI nr
Match: XP_016901896.1 (PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 80/98 (81.63%), Postives = 80/98 (81.63%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG
Sbjct: 300 MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 359

Query: 61  QLCNIGLTIVFSSHGLGLSDGTSDWYGTEDSLSSIDFR 99
           QLC            LGLSDGTSDWYGTE   SS   R
Sbjct: 360 QLC------------LGLSDGTSDWYGTEGHASSDKLR 385

BLAST of MELO3C031997.2 vs. NCBI nr
Match: XP_017697496.1 (PREDICTED: uncharacterized protein LOC108511175 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MTS  SL+S    ++ +P I++ +GSHM++SH+G+V+T T+ L NTY VP L+ NL SVG
Sbjct: 119 MTSNPSLVSVETNLNHVPVIYTANGSHMTVSHVGSVSTSTLSLPNTYVVPKLSLNLLSVG 178

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QL   GLT+ F+  G  + D
Sbjct: 179 QLVEHGLTVTFTDKGCDVQD 198

BLAST of MELO3C031997.2 vs. NCBI nr
Match: XP_017697497.1 (PREDICTED: uncharacterized protein LOC108511175 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-11
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MTS  SL+S    ++ +P I++ +GSHM++SH+G+V+T T+ L NTY VP L+ NL SVG
Sbjct: 67  MTSNPSLVSVETNLNHVPVIYTANGSHMTVSHVGSVSTSTLSLPNTYVVPKLSLNLLSVG 126

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QL   GLT+ F+  G  + D
Sbjct: 127 QLVEHGLTVTFTDKGCDVQD 146

BLAST of MELO3C031997.2 vs. NCBI nr
Match: XP_008465564.1 (PREDICTED: uncharacterized protein LOC103503195 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MTS  SL++   P  SLPPI++ DG+ M+I+H+GT+NTP++ L +TY +PNLTFNL SV 
Sbjct: 79  MTSNYSLMNIPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCIPNLTFNLVSVD 138

Query: 61  QLCNI 66
           QL  I
Sbjct: 139 QLFRI 143

BLAST of MELO3C031997.2 vs. NCBI nr
Match: PNX95078.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MT+ I  L S   V SLPPIH+  G+ M+I+H G V+T  + L +TY++PNL  NL S+G
Sbjct: 330 MTTDIKSLPSATLVSSLPPIHTASGNTMNITHTGHVSTSNLTLPDTYYIPNLKLNLISIG 389

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QLC  GL + FS  G+ + D
Sbjct: 390 QLCEQGLNVNFSLSGVQVQD 409

BLAST of MELO3C031997.2 vs. TrEMBL
Match: tr|A0A1S4E0Y9|A0A1S4E0Y9_CUCME (uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.8e-34
Identity = 80/98 (81.63%), Postives = 80/98 (81.63%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG
Sbjct: 300 MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 359

Query: 61  QLCNIGLTIVFSSHGLGLSDGTSDWYGTEDSLSSIDFR 99
           QLC            LGLSDGTSDWYGTE   SS   R
Sbjct: 360 QLC------------LGLSDGTSDWYGTEGHASSDKLR 385

BLAST of MELO3C031997.2 vs. TrEMBL
Match: tr|A0A2N9IWM2|A0A2N9IWM2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56556 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MT   S  S  +P+   P I++ D SHMS+SHIGT+++P + + +TY VP L+ NL SVG
Sbjct: 179 MTPHASHFSQKMPLAPSPIIYTADSSHMSVSHIGTISSPDLTIPDTYLVPKLSLNLLSVG 238

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QLC +GL + FS+HG+ + D
Sbjct: 239 QLCELGLDLHFSNHGVDVQD 258

BLAST of MELO3C031997.2 vs. TrEMBL
Match: tr|A0A2N9EP07|A0A2N9EP07_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4303 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-12
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           M+    L SS IP    P I + +GSH++ SH G+V+TPT+ LS+TY +PNLT NL SVG
Sbjct: 332 MSPDSQLFSSVIPTTHAPLIQTANGSHITASHTGSVSTPTLSLSDTYLIPNLTLNLISVG 391

Query: 61  QLCNIGLTIVFSSHGLGLSDGTSDWYGT 89
           QLC +G  + F S G  +  G+SD  GT
Sbjct: 392 QLCELGFDLWFGSSGCRV-QGSSDESGT 418

BLAST of MELO3C031997.2 vs. TrEMBL
Match: tr|A0A2N9IF95|A0A2N9IF95_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50453 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-12
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MT   S  S   P+   P I++ D SHMS+SHIGT+++P + + +TY VP L+ NL SVG
Sbjct: 321 MTPHASHFSQKTPLAPSPIIYTADSSHMSVSHIGTISSPDLTIPDTYLVPKLSLNLLSVG 380

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QLC +GL + FS+HG+ + D
Sbjct: 381 QLCELGLDLHFSNHGVDVQD 400

BLAST of MELO3C031997.2 vs. TrEMBL
Match: tr|A0A2N9FSK5|A0A2N9FSK5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18090 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-12
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MTSGISLLSSHIPVHSLPPIHSTDGSHMSISHIGTVNTPTIKLSNTYHVPNLTFNLASVG 60
           MT   S  S   P+   P I++ D SHMS+SHIGT+++P + + +TY VP L+ NL SVG
Sbjct: 321 MTPHASHFSQKTPLAPSPIIYTADSSHMSVSHIGTISSPDLTIPDTYLVPKLSLNLLSVG 380

Query: 61  QLCNIGLTIVFSSHGLGLSD 81
           QLC +GL + FS+HG+ + D
Sbjct: 381 QLCELGLDLHFSNHGVDVQD 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901896.11.5e-3381.63PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo][more]
XP_017697496.16.0e-1147.50PREDICTED: uncharacterized protein LOC108511175 isoform X1 [Phoenix dactylifera][more]
XP_017697497.16.0e-1147.50PREDICTED: uncharacterized protein LOC108511175 isoform X2 [Phoenix dactylifera][more]
XP_008465564.12.3e-1055.38PREDICTED: uncharacterized protein LOC103503195 [Cucumis melo][more]
PNX95078.12.3e-1047.50retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E0Y9|A0A1S4E0Y9_CUCME9.8e-3481.63uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=... [more]
tr|A0A2N9IWM2|A0A2N9IWM2_FAGSY4.7e-1247.50Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56556 PE=4 SV=1[more]
tr|A0A2N9EP07|A0A2N9EP07_FAGSY8.0e-1248.86Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4303 PE=4 SV=1[more]
tr|A0A2N9IF95|A0A2N9IF95_FAGSY8.0e-1247.50Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50453 PE=4 SV=1[more]
tr|A0A2N9FSK5|A0A2N9FSK5_FAGSY8.0e-1247.50Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18090 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031997.2.1MELO3C031997.2.1mRNA