MELO3C031965.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031965.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr06 : 12027786 .. 12028426 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTGTAGAGAAATAATTATTTGATAATTGGGTTAGAGTAAGGAAAATAATATAAACGTCACACGACGTTCGCAATGTACATTTACTTCACAATTTTTCTATCAGTACTCATAAGTGATTCTTTTTTTTTTCCCGCAGTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

mRNA sequence

ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

Coding sequence (CDS)

ATGGCGGAGAAACTACCTGGATGTTGTGTCCACGCAACGACTGTAATTGATTGTAGAATAAAGACACTGAAGCGGACATTCCAGGCCATTGCCGAAATGCGGGGGCTAGCGTGCAGTGACTTTGGATGGAACGATGAAGAGAAATGCATAATTTCGCATCCTGTAGCGAAGGAACTCCTGAACAAATCATTTCTGTATTACGACAAACTTACATATGTGTTCGGTCGCGATAGGACGACGGGTCGATTCGCTAAGACATTCACCGATGTGGGGTCTAACGAGCCTGACGGGTATGACGAATTTAACATGGGGATGGAAACGGGTAGGACGATGTACGCGCATCACGACCTTCTCACGCTTCAGAGGGTAGGACCAAATCGTGTGGATCCAAGAGGAAGAAAGGAAGTCAGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACAGCAACTCAGGATGATTGTGGAGTGACCTATACGCACCCTTGTCAATGA

Protein sequence

MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCIISHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGMETGRTMYAHHDLLTLQRVGPNRVDPRGRKEVSERWMLKAYIWRSTKQTATQDDCGVTYTHPCQ
Homology
[Close]
BLAST of MELO3C031965.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 164.1 bits (414), Expect = 4.2e-37
Identity = 84/116 (72.41%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKL GC V ATTVIDCRIKTLKRTFQAIAEM G ACS FGWNDEEKCI+         
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEP-DGYDEFNMG 105
             S P AK LLN  F YYD+LTYVFGRDR TGRFA+TF DVGSNEP  GYD F+MG
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG 484

[Close]
BLAST of MELO3C031965.2 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 79/117 (67.52%), Postives = 86/117 (73.50%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC VHATTVID RIKTLK+TFQAIAEMRG ACS  GWND+EKCII         
Sbjct: 2   MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDNW 61

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGME 107
             S+P AKELLNK F YYD+LTYVFGRD+ TGRFA+TF DVG     G  +   GME
Sbjct: 62  VRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADVGLTSLTGMTDLIWGME 118

[Close]
BLAST of MELO3C031965.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 9.9e-31
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII----SHPVA 60
           MA K+PGC +HA+T ID RIK LKR F A+AEMRG  CS FGWNDE+KCI+    SHP A
Sbjct: 48  MAFKIPGCNIHAST-IDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKESHPAA 107

Query: 61  KELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEF 102
           K LLNKSF++YD+L+YVFG+DR TG  A+ F D+GSN+P GYD F
Sbjct: 108 KGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAF 151

[Close]
BLAST of MELO3C031965.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 7.1e-29
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MA K+PG  +HA+T ID RIK +KR F A+AEMRG  CS FGWNDE+KCI+         
Sbjct: 48  MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 107

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEF 102
             SHP AK LLNKSF++YD+L+YVFG+DR TG  A++F D+GSN+P GYD F
Sbjct: 108 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]
BLAST of MELO3C031965.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MA K+PG  +HA+T ID RIK +KR F A+AEMRG  CS FGWNDE+KCI+         
Sbjct: 407 MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 466

Query: 61  SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYD 100
           SHP AK LLNKSF++YD+L+YVFG+DR TG  A++F D+GSN+P GYD
Sbjct: 467 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 513

[Close]
BLAST of MELO3C031965.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 84/116 (72.41%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKL GC V ATTVIDCRIKTLKRTFQAIAEM G ACS FGWNDEEKCI+         
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEP-DGYDEFNMG 105
             S P AK LLN  F YYD+LTYVFGRDR TGRFA+TF DVGSNEP  GYD F+MG
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG 484

[Close]
BLAST of MELO3C031965.2 vs. TrEMBL
Match: tr|A0A1S4DU21|A0A1S4DU21_CUCME (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.5e-35
Identity = 79/117 (67.52%), Postives = 86/117 (73.50%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MAEKLPGC VHATTVID RIKTLK+TFQAIAEMRG ACS  GWND+EKCII         
Sbjct: 2   MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDNW 61

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEFNMGME 107
             S+P AKELLNK F YYD+LTYVFGRD+ TGRFA+TF DVG     G  +   GME
Sbjct: 62  VRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADVGLTSLTGMTDLIWGME 118

[Close]
BLAST of MELO3C031965.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.6e-31
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII----SHPVA 60
           MA K+PGC +HA+T ID RIK LKR F A+AEMRG  CS FGWNDE+KCI+    SHP A
Sbjct: 48  MAFKIPGCNIHAST-IDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKESHPAA 107

Query: 61  KELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEF 102
           K LLNKSF++YD+L+YVFG+DR TG  A+ F D+GSN+P GYD F
Sbjct: 108 KGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAF 151

[Close]
BLAST of MELO3C031965.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.7e-29
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MA K+PG  +HA+T ID RIK +KR F A+AEMRG  CS FGWNDE+KCI+         
Sbjct: 48  MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 107

Query: 61  --SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYDEF 102
             SHP AK LLNKSF++YD+L+YVFG+DR TG  A++F D+GSN+P GYD F
Sbjct: 108 VKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]
BLAST of MELO3C031965.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 0 

Query: 1   MAEKLPGCCVHATTVIDCRIKTLKRTFQAIAEMRGLACSDFGWNDEEKCII--------- 60
           MA K+PG  +HA+T ID RIK +KR F A+AEMRG  CS FGWNDE+KCI+         
Sbjct: 407 MAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 466

Query: 61  SHPVAKELLNKSFLYYDKLTYVFGRDRTTGRFAKTFTDVGSNEPDGYD 100
           SHP AK LLNKSF++YD+L+YVFG+DR TG  A++F D+GSN+P GYD
Sbjct: 467 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 513

The following BLAST results are available for this feature:
BLAST of MELO3C031965.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.14.2e-3772.41retrotransposon protein [Cucumis melo subsp. melo][more]
XP_016899497.11.1e-3467.52PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
XP_008459131.19.9e-3164.76PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
XP_008466949.17.1e-2958.93PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN34114.11.6e-2860.19retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C031965.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031965.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031965.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME2.8e-3772.41Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DU21|A0A1S4DU21_CUCME7.5e-3567.52uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME6.6e-3164.76uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME4.7e-2958.93uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME1.0e-2860.19Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031965.2.1MELO3C031965.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 15..140

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031965.2Watermelon (97103) v2medwmbB421
MELO3C031965.2Watermelon (97103) v2medwmbB424
MELO3C031965.2Wax gourdmedwgoB531
MELO3C031965.2Cucumber (Gy14) v2cgybmedB215
MELO3C031965.2Cucumber (Gy14) v2cgybmedB492
MELO3C031965.2Cucumber (Gy14) v1cgymedB379
MELO3C031965.2Cucumber (Gy14) v1cgymedB412
MELO3C031965.2Cucurbita maxima (Rimu)cmamedB346
MELO3C031965.2Cucurbita maxima (Rimu)cmamedB560
MELO3C031965.2Cucurbita maxima (Rimu)cmamedB777
MELO3C031965.2Cucurbita moschata (Rifu)cmomedB332
MELO3C031965.2Cucurbita moschata (Rifu)cmomedB547
MELO3C031965.2Cucurbita moschata (Rifu)cmomedB774
MELO3C031965.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C031965.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C031965.2Wild cucumber (PI 183967)cpimedB239
MELO3C031965.2Wild cucumber (PI 183967)cpimedB552
MELO3C031965.2Cucumber (Chinese Long) v2cumedB238
MELO3C031965.2Cucumber (Chinese Long) v2cumedB534
MELO3C031965.2Bottle gourd (USVL1VR-Ls)lsimedB280
MELO3C031965.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031965.2Watermelon (Charleston Gray)medwcgB413
MELO3C031965.2Watermelon (Charleston Gray)medwcgB417
MELO3C031965.2Watermelon (97103) v1medwmB448
MELO3C031965.2Watermelon (97103) v1medwmB472
MELO3C031965.2Silver-seed gourdcarmedB0220
MELO3C031965.2Silver-seed gourdcarmedB0384
MELO3C031965.2Silver-seed gourdcarmedB0661
MELO3C031965.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031965.2Cucumber (Chinese Long) v3cucmedB566