MELO3C031958.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C031958.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 11958139 .. 11958446 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAGCTATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGAACGATTTAGATAACATTGCGGGAGGGTCGTCGTCTGTGGGCGACAATACGGGTGAGTCTAAGAATTTCCTTCATTTTAACTTATGATTATTTCATGTTTTTTTCTAACATTATATGTTATTATCGATTTATTGAGTAGGGTCTTCTTCTTAACAACCTGCAACTCCGACTCCGAGGAGACGTGCACAGTCTCGACTCTTGGAGTTAGAGTGCCATATTGCAATAAATGA

mRNA sequence

ATGTCCACAGCTATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGAACGATTTAGATAACATTGCGGGAGGGTCGTCGTCTGTGGGCGACAATACGGGTGAGGTCTTCTTCTTAACAACCTGCAACTCCGACTCCGAGGAGACGTGCACAGTCTCGACTCTTGGAGTTAGAGTGCCATATTGCAATAAATGA

Coding sequence (CDS)

ATGTCCACAGCTATTATGTCATCGTCATATCCACGTAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGAACGATTTAGATAACATTGCGGGAGGGTCGTCGTCTGTGGGCGACAATACGGGTGAGGTCTTCTTCTTAACAACCTGCAACTCCGACTCCGAGGAGACGTGCACAGTCTCGACTCTTGGAGTTAGAGTGCCATATTGCAATAAATGA

Protein sequence

MSTAIMSSSYPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNTGEVFFLTTCNSDSEETCTVSTLGVRVPYCNK
BLAST of MELO3C031958.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 6  MSSSYPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNTG 45
          MSSSYPR+NF+ETD MFLEFE+ LDN  GGSSSVGDN G
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVG 39

BLAST of MELO3C031958.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 10 YPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNTG 45
          Y RNNF+ETD MFLEFE+DLDN+AGGSSSVGDN G
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAG 37

BLAST of MELO3C031958.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 8  SSYPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNT 44
          SS+PRNNF+ETD MFL+F  DLDN+AGGSSS+ +N+
Sbjct: 52 SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENS 87

BLAST of MELO3C031958.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 16 METDAMFLEFENDLDNIAGGSSSVGDNT 44
          METD MFL+FE+DLDNIAGGSSSVGDNT
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNT 28

BLAST of MELO3C031958.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-08
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 6  MSSSYPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNTG 45
          MSSSYPR+NF+ETD MFLEFE+ LDN  GGSSSVGDN G
Sbjct: 1  MSSSYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVG 39

BLAST of MELO3C031958.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 10 YPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNTG 45
          Y RNNF+ETD MFLEFE+DLDN+AGGSSSVGDN G
Sbjct: 3  YARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAG 37

BLAST of MELO3C031958.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-05
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 8  SSYPRNNFMETDAMFLEFENDLDNIAGGSSSVGDNT 44
          SS+PRNNF+ETD MFL+F  DLDN+AGGSSS+ +N+
Sbjct: 52 SSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENS 87

BLAST of MELO3C031958.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-04
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 16 METDAMFLEFENDLDNIAGGSSSVGDNT 44
          METD MFL+FE+DLDNIAGGSSSVGDNT
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNT 28

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016902990.13.0e-0879.49PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
XP_016901035.12.0e-0782.86PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016901155.12.4e-0569.44PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
ADN34071.15.9e-0489.29CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME2.0e-0879.49uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME1.3e-0782.86uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME1.6e-0569.44LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|E5GC72|E5GC72_CUCME3.9e-0489.29CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031958.2.1MELO3C031958.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None