MELO3C031957.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031957.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr06 : 11957510 .. 11958128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATCGCCCTTGGAGCGGAGAAGACTATTTTTCCACACACTGTTCGCTTCAGCCAGGCGATAGCGTGTGCATGCAAAAGACATTTTTTGTCCGCTGCCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGTGACCTCTAGGTAATTAAGTGCACTACACATTTATGATTTCATTTGAAACATATCTAAATTTAACCAATCTAATGTGTTAAGTTTGTAATGTGTAGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAACATCAGATGCTCACGACCTTTAAAGAGTTTCAGGCCGACTGTCACAAACATTTCAAAAAGTATAGCGACCCGGAGGAGGCTCGTGCCAACCCACTAAACACATTTGTTGGACATCATGAGGATTGACACTTCCTCTGCGACCACTATATGAGTCGTGCATTTTAAGTATTTGTCATGATTAATTATGATAACAAGTTTTAATATGTATAATAAATAAATAATATAAATTTTTTCATGTAGGAGCAATCACAAGCGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACAATAG

mRNA sequence

ATGACGATCGCCCTTGGAGCGGAGAAGACTATTTTTCCACACACTGTTCGCTTCAGCCAGGCGATAGCGTGTGCATGCAAAAGACATTTTTTGTCCGCTGCCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAACATCAGATGCTCACGACCTTTAAAGAGTTTCAGGCCGACTGTCACAAACATTTCAAAAAGTATAGCGACCCGGAGGAGGCTCGTGCCAACCCACTAAACACATTTGAGCAATCACAAGCGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACAATAG

Coding sequence (CDS)

ATGACGATCGCCCTTGGAGCGGAGAAGACTATTTTTCCACACACTGTTCGCTTCAGCCAGGCGATAGCGTGTGCATGCAAAAGACATTTTTTGTCCGCTGCCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGCGATTGTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTAAACATCAGATGCTCACGACCTTTAAAGAGTTTCAGGCCGACTGTCACAAACATTTCAAAAAGTATAGCGACCCGGAGGAGGCTCGTGCCAACCCACTAAACACATTTGAGCAATCACAAGCGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGCGGGTCCAAGTCGTTTCTACAACAATAG

Protein sequence

MTIALGAEKTIFPHTVRFSQAIACACKRHFLSAALSGRTLGENTLRSSRRLFVLDFNDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLNTFEQSQANKAARQKQPYNHSSGSKSFLQQ

Homology

[Close]

BLAST of MELO3C031957.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 151.0 bits (380), Expect = 2.8e-33
Identity = 89/152 (58.55%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 1   MTIALGAEKTIFPHTVRFSQAIACACKRHFLSAALS----GRTLGENTLRSSRRLFVLDF 60
           MTIA GAEK I P+ V FSQAI    ++ F    L     GR   E      +R FVLDF
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDF 121

Query: 61  NDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLNTF--------------- 120
           NDQAMNRFV+HQM+TTFKEFQ DCH+HFKKYSDPEEARANP N                 
Sbjct: 122 NDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYI 181

Query: 121 -----EQSQANKAARQKQPYNHSSGSKSFLQQ 129
                EQS  NKAARQKQPYNHSSGSKSFLQ+
Sbjct: 182 RRAFQEQSWTNKAARQKQPYNHSSGSKSFLQR 213

[Close]

BLAST of MELO3C031957.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MTIALGAEKTIFPHTVRFSQAIACACKRHFLSAALSGRTLGENTLR----SSRRLFVLDF 60
           M IA GAE  IFP+ +RFSQAI    ++ F    L    +    +     + +R FVLDF
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDF 130

Query: 61  NDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLN 100
           NDQA+NRFV+HQMLTTFKEF  DCH+HFK      EARANP N
Sbjct: 131 NDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPN 167

[Close]

BLAST of MELO3C031957.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 31  LSAALSGRTLGENTLRSSRRLFVLDFNDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDP 90
           L   ++GR   E  +++  + FVLDF+DQAMN  V++QM  TFKEF  DCHK FKKYSDP
Sbjct: 110 LECYVTGREYIE-VVKADLQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDP 169

Query: 91  EEARANPLN 100
           EEARANP N
Sbjct: 170 EEARANPPN 177

[Close]

BLAST of MELO3C031957.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 52  FVLDFNDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLNTF---------- 111
           F +D + + +N+F++ QM  +FK++++D H+++ ++ DP EARANP              
Sbjct: 21  FRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLTNPEDWNHLC 80

Query: 112 ---------EQSQANKAARQKQPYNHSSGSKSFLQ 128
                    E ++ NK  R K P+NH +GSKSFLQ
Sbjct: 81  DRWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQ 115

[Close]

BLAST of MELO3C031957.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-33
Identity = 89/152 (58.55%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 1   MTIALGAEKTIFPHTVRFSQAIACACKRHFLSAALS----GRTLGENTLRSSRRLFVLDF 60
           MTIA GAEK I P+ V FSQAI    ++ F    L     GR   E      +R FVLDF
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDF 121

Query: 61  NDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLNTF--------------- 120
           NDQAMNRFV+HQM+TTFKEFQ DCH+HFKKYSDPEEARANP N                 
Sbjct: 122 NDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDEDWHFLYDHYI 181

Query: 121 -----EQSQANKAARQKQPYNHSSGSKSFLQQ 129
                EQS  NKAARQKQPYNHSSGSKSFLQ+
Sbjct: 182 RRAFQEQSWTNKAARQKQPYNHSSGSKSFLQR 213

[Close]

BLAST of MELO3C031957.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MTIALGAEKTIFPHTVRFSQAIACACKRHFLSAALSGRTLGENTLR----SSRRLFVLDF 60
           M IA GAE  IFP+ +RFSQAI    ++ F    L    +    +     + +R FVLDF
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDF 130

Query: 61  NDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDPEEARANPLN 100
           NDQA+NRFV+HQMLTTFKEF  DCH+HFK      EARANP N
Sbjct: 131 NDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPN 167

[Close]

BLAST of MELO3C031957.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.8e-12
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 31  LSAALSGRTLGENTLRSSRRLFVLDFNDQAMNRFVKHQMLTTFKEFQADCHKHFKKYSDP 90
           L   ++GR   E  +++  + FVLDF+DQAMN  V++QM  TFKEF  DCHK FKKYSDP
Sbjct: 110 LECYVTGREYIE-VVKADLQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDP 169

Query: 91  EEARANPLN 100
           EEARANP N
Sbjct: 170 EEARANPPN 177

The following BLAST results are available for this feature:

BLAST of MELO3C031957.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	2.8e-33	58.55	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	6.2e-17	52.43	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	1.0e-11	59.42	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_022156286.1	1.1e-05	34.74	uncharacterized protein LOC111023212 [Momordica charantia]	[more]

BLAST of MELO3C031957.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031957.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031957.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	1.8e-33	58.55	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	4.1e-17	52.43	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	6.8e-12	59.42	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031957.2.1	MELO3C031957.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..128

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031957.2	Silver-seed gourd	carmedB0220
MELO3C031957.2	Silver-seed gourd	carmedB0384
MELO3C031957.2	Silver-seed gourd	carmedB0661
MELO3C031957.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031957.2	Cucumber (Chinese Long) v3	cucmedB566
MELO3C031957.2	Watermelon (97103) v2	medwmbB421
MELO3C031957.2	Watermelon (97103) v2	medwmbB424
MELO3C031957.2	Wax gourd	medwgoB531
MELO3C031957.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031957.2	Cucumber (Gy14) v2	cgybmedB492
MELO3C031957.2	Cucumber (Gy14) v1	cgymedB379
MELO3C031957.2	Cucumber (Gy14) v1	cgymedB412
MELO3C031957.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031957.2	Cucurbita maxima (Rimu)	cmamedB560
MELO3C031957.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031957.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031957.2	Cucurbita moschata (Rifu)	cmomedB547
MELO3C031957.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031957.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031957.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031957.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031957.2	Wild cucumber (PI 183967)	cpimedB552
MELO3C031957.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031957.2	Cucumber (Chinese Long) v2	cumedB534
MELO3C031957.2	Bottle gourd (USVL1VR-Ls)	lsimedB280
MELO3C031957.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031957.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C031957.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031957.2	Watermelon (97103) v1	medwmB448
MELO3C031957.2	Watermelon (97103) v1	medwmB472