MELO3C031952.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031952.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 11817168 .. 11817988 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACATATTTATGTAGTTTATACATTTTGATTCTAGCTATGTGTTCGTATTTGCTTATTGAATGTTTGTTTTATATGTCCACAGGCATTATGTCATCGTCATACCTACATAATAATAATTTTTTAAGGAGACGGACGCTATGTTCCTCGAGTTTGAGGATGATTTAGATAACATCGCGGGAGGGTTGTCGTCTGTGAGCAACAATGCAGGTGAGTCTAAGAATTTCCTTCATTTTAACTTACGATTATTTCATTTTTTTTTCTAACATTATATGTTATAATTACTGATTTATTGAGTATGATCTTCTTTCTAACCAACCTGTGACTCAAACTCCTAGGAGACGTGTGCAGTCTCGACTCTTGGAGTTGGAGCATCACGTTGCAATAAATGGACGCATTCCGATGACGATCGTCCCTGGAGCGGAAAAGCCTATTTTCCTATACATCGTTCGCTTCAGCCAGACGATAGGTGTGTGCGTGCGAAAGATATTTTTCGTCTGCTGCCTTAAGTGGGCGAACGTTGGGAGAGAATACATTGAGGTCGTTAAGGGGGACCTCCAGGTAATTAAGTGCACTATACATTTATGATTTCATTTGAAACATATATGAGTTAACCAATATAATGTGTTATCTTTGTAATGTGTAGCGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCATGACCTTTAAAGAGTTTCGGACCGACTGTCACAGACAGTTCAAAAAGTACAACGATCCGGAGAAGGCTCGTGCCAACCCATCAAATGTATTGGTTGGACGTCATGAGGATTGA

mRNA sequence

CACATATTTATGTAGTTTATACATTTTGATTCTAGCTATGTGTTCGTATTTGCTTATTGAATGTTTGTTTTATATGTCCACAGGCATTATGTCATCGTCATACCTACATAATAATAATTTTTTAAGGAGACGGACGCTATGTTCCTCGAGTTTGAGGATGATTTAGATAACATCGCGGGAGGGTTGTCGTCTGTGAGCAACAATGCAGTATGATCTTCTTTCTAACCAACCTGTGACTCAAACTCCTAGGAGACGTGTGCAGTCTCGACTCTTGGAGTTGGAGCATCACGTTGCAATAAATGGACGCATTCCGATGACGATCGTCCCTGGAGCGGAAAAGCCTATTTTCCTATACATCGTTCGCTTCAGCCAGACGATAGGTGTGTGCGTGCGAAAGATATTTTTCGTCTGCTGCCTTAAGTGGGCGAACGTTGGGAGAGAATACATTGAGGTCGTTAAGGGGGACCTCCAGCGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCATGACCTTTAAAGAGTTTCGGACCGACTGTCACAGACAGTTCAAAAAGTACAACGATCCGGAGAAGGCTCGTGCCAACCCATCAAATGTATTGGTTGGACGTCATGAGGATTGA

Coding sequence (CDS)

ATGCAGTATGATCTTCTTTCTAACCAACCTGTGACTCAAACTCCTAGGAGACGTGTGCAGTCTCGACTCTTGGAGTTGGAGCATCACGTTGCAATAAATGGACGCATTCCGATGACGATCGTCCCTGGAGCGGAAAAGCCTATTTTCCTATACATCGTTCGCTTCAGCCAGACGATAGGTGTGTGCGTGCGAAAGATATTTTTCGTCTGCTGCCTTAAGTGGGCGAACGTTGGGAGAGAATACATTGAGGTCGTTAAGGGGGACCTCCAGCGGTTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCATGACCTTTAAAGAGTTTCGGACCGACTGTCACAGACAGTTCAAAAAGTACAACGATCCGGAGAAGGCTCGTGCCAACCCATCAAATGTATTGGTTGGACGTCATGAGGATTGA

Protein sequence

MQYDLLSNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKIFFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQFKKYNDPEKARANPSNVLVGRHED
Homology
[Close]
BLAST of MELO3C031952.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           S+Q  T TPRRR QSRLLELE HVAING IPMTI PGAEKPI  Y V FSQ IGVCVRK 
Sbjct: 31  SSQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKT 90

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQFK 126
           F V CLKW +VGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQM+ TFKEF+ DCHR FK
Sbjct: 91  FPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFK 150

Query: 127 KYNDPEKARANPSNVLVGRHED 149
           KY+DPE+ARANP N LVGR ED
Sbjct: 151 KYSDPEEARANPPNALVGRDED 172

[Close]
BLAST of MELO3C031952.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 6.9e-52
Identity = 107/142 (75.35%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           S  P TQTPRRRVQSRLLELE HV + G IPM I PGAE PIF Y +RFSQ IGVCV+K 
Sbjct: 40  SQPPATQTPRRRVQSRLLELECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKT 99

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQFK 126
           FFVC LKWA++ REYIEVVKG+LQRFFVLDFNDQA+NRFVEHQML TFKEF  DCHR FK
Sbjct: 100 FFVCYLKWADIDREYIEVVKGNLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK 159

Query: 127 KYNDPEKARANPSNVLVGRHED 149
                 +ARANP NVLVGRHED
Sbjct: 160 ------EARANPPNVLVGRHED 175

[Close]
BLAST of MELO3C031952.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 71/143 (49.65%), Postives = 81/143 (56.64%), Query Frame = 0 

Query: 7   SNQP-VTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRK 66
           S+QP  T TP+R  QSRLLELE +V                                   
Sbjct: 90  SSQPSATLTPKRHTQSRLLELECYV----------------------------------- 149

Query: 67  IFFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQF 126
                       GREYIEVVK DLQ FFVLDF+DQAMN  VE+QM  TFKEF  DCH+QF
Sbjct: 150 -----------TGREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQF 185

Query: 127 KKYNDPEKARANPSNVLVGRHED 149
           KKY+DPE+ARANP N+LVGR+ED
Sbjct: 210 KKYSDPEEARANPPNLLVGRNED 185

[Close]
BLAST of MELO3C031952.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0 

Query: 11  VTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKIFFVC 70
           +T T RRR  SR LELE ++  NG+I ++I    +KPI  + +RFS TI V  R  F + 
Sbjct: 724 LTATLRRRQHSRNLELERYILQNGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQ 783

Query: 71  CLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQM 111
            LKW +V +EYIEVVK    ++FVLDF D  + RFVEHQM
Sbjct: 784 ILKWVDVPQEYIEVVK----QWFVLDFKDLTLTRFVEHQM 819

[Close]
BLAST of MELO3C031952.2 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 4.8e-13
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           ++QPV +TPRR   SR LEL+ +VA NG+I + IVPG +K I  Y+V FS TIGV     
Sbjct: 290 ASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTGDT 349

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFF 94
           F V  LKWA++  EYIE++K  LQ  F
Sbjct: 350 FLVRFLKWADMITEYIELIKSSLQISF 376

[Close]
BLAST of MELO3C031952.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 114/142 (80.28%), Postives = 120/142 (84.51%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           S+Q  T TPRRR QSRLLELE HVAING IPMTI PGAEKPI  Y V FSQ IGVCVRK 
Sbjct: 31  SSQQATPTPRRRAQSRLLELERHVAINGCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKT 90

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQFK 126
           F V CLKW +VGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQM+ TFKEF+ DCHR FK
Sbjct: 91  FPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFK 150

Query: 127 KYNDPEKARANPSNVLVGRHED 149
           KY+DPE+ARANP N LVGR ED
Sbjct: 151 KYSDPEEARANPPNALVGRDED 172

[Close]
BLAST of MELO3C031952.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.6e-52
Identity = 107/142 (75.35%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           S  P TQTPRRRVQSRLLELE HV + G IPM I PGAE PIF Y +RFSQ IGVCV+K 
Sbjct: 40  SQPPATQTPRRRVQSRLLELECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKT 99

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQFK 126
           FFVC LKWA++ REYIEVVKG+LQRFFVLDFNDQA+NRFVEHQML TFKEF  DCHR FK
Sbjct: 100 FFVCYLKWADIDREYIEVVKGNLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK 159

Query: 127 KYNDPEKARANPSNVLVGRHED 149
                 +ARANP NVLVGRHED
Sbjct: 160 ------EARANPPNVLVGRHED 175

[Close]
BLAST of MELO3C031952.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 71/143 (49.65%), Postives = 81/143 (56.64%), Query Frame = 0 

Query: 7   SNQP-VTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRK 66
           S+QP  T TP+R  QSRLLELE +V                                   
Sbjct: 90  SSQPSATLTPKRHTQSRLLELECYV----------------------------------- 149

Query: 67  IFFVCCLKWANVGREYIEVVKGDLQRFFVLDFNDQAMNRFVEHQMLMTFKEFRTDCHRQF 126
                       GREYIEVVK DLQ FFVLDF+DQAMN  VE+QM  TFKEF  DCH+QF
Sbjct: 150 -----------TGREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQF 185

Query: 127 KKYNDPEKARANPSNVLVGRHED 149
           KKY+DPE+ARANP N+LVGR+ED
Sbjct: 210 KKYSDPEEARANPPNLLVGRNED 185

[Close]
BLAST of MELO3C031952.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQTIGVCVRKI 66
           ++QPV +TPRR   SR LEL+ +VA NG+I + IVPG +K I  Y+V FS TIGV     
Sbjct: 290 ASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISPYVVHFSNTIGVLTGDT 349

Query: 67  FFVCCLKWANVGREYIEVVKGDLQRFF 94
           F V  LKWA++  EYIE++K  LQ  F
Sbjct: 350 FLVRFLKWADMITEYIELIKSSLQISF 376

[Close]
BLAST of MELO3C031952.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 7   SNQPVTQTPRRRVQSRLLELEHHVAINGRIPMTIVPGAEKPIFLYIVRFSQ 58
           S   VT TPRRRVQSRLLELE +   N  IPM I PG  KPI L+++RFSQ
Sbjct: 339 SQPSVTSTPRRRVQSRLLELERYFTANRWIPMMIAPGTNKPISLHLIRFSQ 389

The following BLAST results are available for this feature:
BLAST of MELO3C031952.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34071.11.9e-5780.28CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901035.16.9e-5275.35PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
XP_016901155.13.3e-2249.65PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
XP_011648549.15.7e-1450.00PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
XP_016903164.14.8e-1351.72PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo][more]
BLAST of MELO3C031952.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031952.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031952.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GC72|E5GC72_CUCME1.2e-5780.28CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME4.6e-5275.35uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME2.2e-2249.65LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|A0A1S4E4L2|A0A1S4E4L2_CUCME3.2e-1351.72uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=... [more]
tr|A0A1S3CQF6|A0A1S3CQF6_CUCME2.0e-0762.75uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031952.2.1MELO3C031952.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031952.2Cucumber (Gy14) v2cgybmedB215
MELO3C031952.2Cucurbita maxima (Rimu)cmamedB346
MELO3C031952.2Cucurbita maxima (Rimu)cmamedB777
MELO3C031952.2Cucurbita moschata (Rifu)cmomedB332
MELO3C031952.2Cucurbita moschata (Rifu)cmomedB774
MELO3C031952.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C031952.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C031952.2Wild cucumber (PI 183967)cpimedB239
MELO3C031952.2Cucumber (Chinese Long) v2cumedB238
MELO3C031952.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031952.2Watermelon (Charleston Gray)medwcgB417
MELO3C031952.2Watermelon (97103) v1medwmB448
MELO3C031952.2Silver-seed gourdcarmedB0384
MELO3C031952.2Silver-seed gourdcarmedB0661
MELO3C031952.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031952.2Watermelon (97103) v2medwmbB424
MELO3C031952.2Wax gourdmedwgoB531