MELO3C031951.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031951.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 11886784 .. 11887047 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACTCTGATGACCACCGTAGCTAATTCCGAACTCCTGCAAAAAAGAACTCTGCAAAGCCCATGTGTACTGACAATCCTAGAGAAGGTGATTAAGGTCTTCCTCTGTCTTCCGACAAAGCAAACGACAAAAAGACCCAACAAGAGATGTCCTTTTTCTAAAAAGCCTATCAATAGGGTTAACCCGACCAAGAAAGACTTGTCAGATAAAGAACCTGGCTTTCTTGAGGACCTCAATCCTCCAAACTATGTCAAAAAATAA

mRNA sequence

ATGAACACTCTGATGACCACCGTAGCTAATTCCGAACTCCTGCAAAAAAGAACTCTGCAAAGCCCATGTGTACTGACAATCCTAGAGAAGGTGATTAAGGTCTTCCTCTGTCTTCCGACAAAGCAAACGACAAAAAGACCCAACAAGAGATGTCCTTTTTCTAAAAAGCCTATCAATAGGGTTAACCCGACCAAGAAAGACTTGTCAGATAAAGAACCTGGCTTTCTTGAGGACCTCAATCCTCCAAACTATGTCAAAAAATAA

Coding sequence (CDS)

ATGAACACTCTGATGACCACCGTAGCTAATTCCGAACTCCTGCAAAAAAGAACTCTGCAAAGCCCATGTGTACTGACAATCCTAGAGAAGGTGATTAAGGTCTTCCTCTGTCTTCCGACAAAGCAAACGACAAAAAGACCCAACAAGAGATGTCCTTTTTCTAAAAAGCCTATCAATAGGGTTAACCCGACCAAGAAAGACTTGTCAGATAAAGAACCTGGCTTTCTTGAGGACCTCAATCCTCCAAACTATGTCAAAAAATAA

Protein sequence

MNTLMTTVANSELLQKRTLQSPCVLTILEKVIKVFLCLPTKQTTKRPNKRCPFSKKPINRVNPTKKDLSDKEPGFLEDLNPPNYVKK

Homology

[Close]

BLAST of MELO3C031951.2 vs. NCBI nr
Match: XP_008437670.1 (PREDICTED: uncharacterized protein LOC103483010 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 30  KVIKVFLCLPTKQTTKRPNKRCPFSKKPINRVNPTKKDLSDKEPGFLEDLNPPNYVK 87
           +VIKVFLCLPTK   +RPNK+   + K IN V  +K +L DKE  FL +LN PN +K
Sbjct: 102 EVIKVFLCLPTKNIAERPNKQGSPTNKRINSVRTSKLNLPDKEAQFLWNLNAPNNIK 158

[Close]

BLAST of MELO3C031951.2 vs. TrEMBL
Match: tr|A0A1S3AV61|A0A1S3AV61_CUCME (uncharacterized protein LOC103483010 OS=Cucumis melo OX=3656 GN=LOC103483010 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-05
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 30  KVIKVFLCLPTKQTTKRPNKRCPFSKKPINRVNPTKKDLSDKEPGFLEDLNPPNYVK 87
           +VIKVFLCLPTK   +RPNK+   + K IN V  +K +L DKE  FL +LN PN +K
Sbjct: 102 EVIKVFLCLPTKNIAERPNKQGSPTNKRINSVRTSKLNLPDKEAQFLWNLNAPNNIK 158

The following BLAST results are available for this feature:

BLAST of MELO3C031951.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437670.1	2.2e-05	54.39	PREDICTED: uncharacterized protein LOC103483010 [Cucumis melo]	[more]

BLAST of MELO3C031951.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031951.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031951.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV61\|A0A1S3AV61_CUCME	1.4e-05	54.39	uncharacterized protein LOC103483010 OS=Cucumis melo OX=3656 GN=LOC103483010 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031951.2.1	MELO3C031951.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..87

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031951.2	Watermelon (97103) v2	medwmbB421
MELO3C031951.2	Watermelon (97103) v2	medwmbB424
MELO3C031951.2	Wax gourd	medwgoB531
MELO3C031951.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031951.2	Cucumber (Gy14) v2	cgybmedB492
MELO3C031951.2	Cucumber (Gy14) v1	cgymedB379
MELO3C031951.2	Cucumber (Gy14) v1	cgymedB412
MELO3C031951.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031951.2	Cucurbita maxima (Rimu)	cmamedB560
MELO3C031951.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031951.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031951.2	Cucurbita moschata (Rifu)	cmomedB547
MELO3C031951.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031951.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031951.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031951.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031951.2	Wild cucumber (PI 183967)	cpimedB552
MELO3C031951.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031951.2	Cucumber (Chinese Long) v2	cumedB534
MELO3C031951.2	Bottle gourd (USVL1VR-Ls)	lsimedB280
MELO3C031951.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031951.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C031951.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031951.2	Watermelon (97103) v1	medwmB448
MELO3C031951.2	Watermelon (97103) v1	medwmB472
MELO3C031951.2	Silver-seed gourd	carmedB0220
MELO3C031951.2	Silver-seed gourd	carmedB0384
MELO3C031951.2	Silver-seed gourd	carmedB0661
MELO3C031951.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031951.2	Cucumber (Chinese Long) v3	cucmedB566