MELO3C031949.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C031949.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionLOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Locationchr06 : 11777846 .. 11779330 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAAGCATTATATTGTCATACCCACACAATAATTTCCTCAAGACGGACGCTATGCTCCTCGAGTTTGCAGACGATTTAGATAACCTTGTGGGAGGGTCGTCGTCGGTGGGCGACAATTTAGGTGAGTCTGAAAATTGTATACATTTTAACTTATGATTATTTCATGTTTTTTCTAACATTATATGTTCTTATAATTTATTGAGTAGGGTCGTCTTCTCGACCATATGCGACTCCGACTCTGACTCCTAGGAGACGTACGCAGTCTCAACTCTTAGAGTTGGAGCGCTACGTTGCAGCCAATGGGTGCATTTCGATGACAATCGCCCTGACTCGAAGAAGCCTATTTCCACACACGGCGTTCGCTTCAGCCAGGTGATAAGCGTGTGTGTACGAAAGATATTTCCCGTCTGCTGCGTTAAGTTGGCAAACATAGGTAGAGAATACTTCGAGGTTGTCAAGGGCGACCTCCACGTAAGTCCACTACACATTTATGATTTCATTTGAAACATATTTAAGTTAACCAAGCTAATGTGTTGTTTTTGTAATGTATAGTCTTTGTAATGTGTAGTCGCTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAAGTTTGTTGAGCATCAGATCCTCAGCACCTTTAAAGAGTTTCGGGACGACTGTCACAGGTACTTCAAAAAGTACAGTGACCTCGAGGAGGCTCGTGCAAACCCACCAAACCTATTGGTGGGACGTAGTAAGAATTGACACTTCCTCTATGACTACTACATGAGCCGTGTATTCTAGGTGAGCAATTGAACCATTTGTCATGGTTAATTATAATTTCAACTTTTAATATATATAAGAAATAAACAATATAATTGTTTTCATGCAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGAGGGTCAAAGTCGTTTCTACAATGACAACACGAGCTCACTGAGCAAAGAGGGAAGCTGGTCAACCATGTGGAGTTGTTTCGACAAACATATGTTCCAGTCGAAACGTTTGTGTCGCAGGCCGTAGAGGATGCGCATATAAGTTATCAAAGCAATACTTTTTCCTTATTAATTGTCCTCTTTGATAATATATTTTTTAACTTACTAACTTTGTTTTTAAATTTGTTGTAGAATCAAATGCTAGAACTCTAATCCCAGCCTACCTTAGAGGACATGCGATCAGGTGTTGGGTAGATGACCGGGCTACTCAAAAGACCTTGGTTGGGGATCCAAGTCGAAGGTCTGTAAGACGACGAGTGCGAGCAATTCCTCGAAGTCATGTCCACAGTCCACAGAAAGAGAGCTTCAATTACAAGCTAAGCTTGATCAAGCATTAGAATGGATTGAAGAGCACACAAGAAATCACCAAGTGTTAATTTCAAAAGTGGCACAAATGCGGAAGCTAATGGAAGATATGACTAGAGTGCAGCAAGGACCGCTACATGATCCCTAG

mRNA sequence

ATGTCCACAAGCATTATATTGTCATACCCACACAATAATTTCCTCAAGACGGACGCTATGCTCCTCGAGTTTGCAGACGATTTAGATAACCTTGTGGGAGGGTCGTCGTCGGTGGGCGACAATTTAGGGTCGTCTTCTCGACCATATGCGACTCCGACTCTGACTCCTAGGAGACGTACGCAGTCTCAACTCTTAGAGTTGGAGCGCTACGTTGCAGCCAATGGGTGCATTTCGATGACAATCGCCCTGACTCGAAGAAGCCTATTTCCACACACGGCGTTCGCTTCAGCCAGAGAATACTTCGAGGTTGTCAAGGGCGACCTCCACTCGCTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAAGTTTGTTGAGCATCAGATCCTCAGCACCTTTAAAGAGTTTCGGGACGACTGTCACAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGAGGGTCAAAGTCGTTTCTACAATGACAACACGAGCTCACTGAGCAAAGAGGGAAGCTGGTCAACCATGTGGAGTTGTTTCGACAAACATATGTTCCAGTCGAAACAATCAAATGCTAGAACTCTAATCCCAGCCTACCTTAGAGGACATGCGATCAGGTGTTGGGTAGATGACCGGGCTACTCAAAAGACCTTGGTTGGGGATCCAAGTCGAAGGTCTACGACGAGTGCGAGCAATTCCTCGAAGTCATGTCCACAGTCCACAGAAAGAGAGCTTCAATTACAAGCTAAGCTTGATCAAGCATTAGAATGGATTGAAGAGCACACAAGAAATCACCAAGTGTTAATTTCAAAAGTGGCACAAATGCGGAAGCTAATGGAAGATATGACTAGAGTGCAGCAAGGACCGCTACATGATCCCTAG

Coding sequence (CDS)

ATGTCCACAAGCATTATATTGTCATACCCACACAATAATTTCCTCAAGACGGACGCTATGCTCCTCGAGTTTGCAGACGATTTAGATAACCTTGTGGGAGGGTCGTCGTCGGTGGGCGACAATTTAGGGTCGTCTTCTCGACCATATGCGACTCCGACTCTGACTCCTAGGAGACGTACGCAGTCTCAACTCTTAGAGTTGGAGCGCTACGTTGCAGCCAATGGGTGCATTTCGATGACAATCGCCCTGACTCGAAGAAGCCTATTTCCACACACGGCGTTCGCTTCAGCCAGAGAATACTTCGAGGTTGTCAAGGGCGACCTCCACTCGCTTTTTGTGCTTGATTTCAATGATCAAGCAATGAATAAGTTTGTTGAGCATCAGATCCTCAGCACCTTTAAAGAGTTTCGGGACGACTGTCACAGGAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAGTAGAGGGTCAAAGTCGTTTCTACAATGACAACACGAGCTCACTGAGCAAAGAGGGAAGCTGGTCAACCATGTGGAGTTGTTTCGACAAACATATGTTCCAGTCGAAACAATCAAATGCTAGAACTCTAATCCCAGCCTACCTTAGAGGACATGCGATCAGGTGTTGGGTAGATGACCGGGCTACTCAAAAGACCTTGGTTGGGGATCCAAGTCGAAGGTCTACGACGAGTGCGAGCAATTCCTCGAAGTCATGTCCACAGTCCACAGAAAGAGAGCTTCAATTACAAGCTAAGCTTGATCAAGCATTAGAATGGATTGAAGAGCACACAAGAAATCACCAAGTGTTAATTTCAAAAGTGGCACAAATGCGGAAGCTAATGGAAGATATGACTAGAGTGCAGCAAGGACCGCTACATGATCCCTAG

Protein sequence

MSTSIILSYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLELERYVAANGCISMTIALTRRSLFPHTAFASAREYFEVVKGDLHSLFVLDFNDQAMNKFVEHQILSTFKEFRDDCHRSNHGRTRLLDRSSLTIIVEGQSRFYNDNTSSLSKEGSWSTMWSCFDKHMFQSKQSNARTLIPAYLRGHAIRCWVDDRATQKTLVGDPSRRSTTSASNSSKSCPQSTERELQLQAKLDQALEWIEEHTRNHQVLISKVAQMRKLMEDMTRVQQGPLHDP
BLAST of MELO3C031949.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 90/158 (56.96%), Postives = 103/158 (65.19%), Query Frame = 0

Query: 7   LSYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLE 66
           + Y  NNFL+TD M LEF DDLDNL GGSSSVGDN GSSS+P AT   TPRRR QS+LLE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQ--TPRRRVQSRLLE 60

Query: 67  LERYVAANGCISMTIAL-TRRSLFPHT-AFASA--------------------REYFEVV 126
           LE +V   GCI M IA      +FP+   F+ A                    REY EVV
Sbjct: 61  LECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVV 120

Query: 127 KGDLHSLFVLDFNDQAMNKFVEHQILSTFKEFRDDCHR 143
           KG+L   FVLDFNDQA+N+FVEHQ+L+TFKEF  DCHR
Sbjct: 121 KGNLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHR 156

BLAST of MELO3C031949.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-32
Identity = 85/150 (56.67%), Postives = 100/150 (66.67%), Query Frame = 0

Query: 15  LKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLELERYVAAN 74
           ++TD M L+F DDLDN+ GGSSSVGDN  SSS+  ATP  TPRRR QS+LLELER+VA N
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQ-QATP--TPRRRAQSRLLELERHVAIN 60

Query: 75  GCISMTIAL-TRRSLFPHTAFAS---------------------AREYFEVVKGDLHSLF 134
           GCI MTIA    + + P+    S                      REY EVVKGDL   F
Sbjct: 61  GCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFF 120

Query: 135 VLDFNDQAMNKFVEHQILSTFKEFRDDCHR 143
           VLDFNDQAMN+FVEHQ+++TFKEF+ DCHR
Sbjct: 121 VLDFNDQAMNRFVEHQMVTTFKEFQVDCHR 147

BLAST of MELO3C031949.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 75/139 (53.96%), Postives = 89/139 (64.03%), Query Frame = 0

Query: 4   SIILSYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQ 63
           S I S+P NNFL+TD M L+FA DLDNL GGSSS+ +N  SSS+P A  TLTP+R TQS+
Sbjct: 49  STISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSA--TLTPKRHTQSR 108

Query: 64  LLELERYVAANGCISMTIALTRRSLFPHTAFASAREYFEVVKGDLHSLFVLDFNDQAMNK 123
           LLELE YV                        + REY EVVK DL   FVLDF+DQAMN 
Sbjct: 109 LLELECYV------------------------TGREYIEVVKADL-QFFVLDFSDQAMNT 160

Query: 124 FVEHQILSTFKEFRDDCHR 143
            VE+Q+ +TFKEF  DCH+
Sbjct: 169 SVEYQMSNTFKEFWGDCHK 160

BLAST of MELO3C031949.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 60/110 (54.55%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 142 RSNHGRTRLLDRSSLTIIVEGQSRFYNDNTSSLSKEGSWSTMWSCFDKHMFQSKQS---- 201
           RSNH RTRLLDRSSLTIIV G S FYND+ SSL +EGS S +W+C +KH F+   S    
Sbjct: 17  RSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRL 76

Query: 202 ---------NARTLIPAYLRGH------AIRCWVDDRATQKTLVGDPSRR 233
                    N+   +P  +  H      AIRCWVDD+ATQK LVGDPSRR
Sbjct: 77  PRMRIIKCWNSNPSLPQRIVTHSLRMKYAIRCWVDDQATQKALVGDPSRR 126

BLAST of MELO3C031949.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-10
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 8  SYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLEL 67
          SYP +NFL+TD M LEF D LDN  GGSSSVGDN+GSSS+     TLTPRR  QS+LL L
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQ--QPGTLTPRRHVQSRLLGL 63

Query: 68 ER 70
           R
Sbjct: 64 LR 63

BLAST of MELO3C031949.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 90/158 (56.96%), Postives = 103/158 (65.19%), Query Frame = 0

Query: 7   LSYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLE 66
           + Y  NNFL+TD M LEF DDLDNL GGSSSVGDN GSSS+P AT   TPRRR QS+LLE
Sbjct: 1   MPYARNNFLETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQ--TPRRRVQSRLLE 60

Query: 67  LERYVAANGCISMTIAL-TRRSLFPHT-AFASA--------------------REYFEVV 126
           LE +V   GCI M IA      +FP+   F+ A                    REY EVV
Sbjct: 61  LECHVVVYGCIPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVV 120

Query: 127 KGDLHSLFVLDFNDQAMNKFVEHQILSTFKEFRDDCHR 143
           KG+L   FVLDFNDQA+N+FVEHQ+L+TFKEF  DCHR
Sbjct: 121 KGNLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHR 156

BLAST of MELO3C031949.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.8e-32
Identity = 85/150 (56.67%), Postives = 100/150 (66.67%), Query Frame = 0

Query: 15  LKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLELERYVAAN 74
           ++TD M L+F DDLDN+ GGSSSVGDN  SSS+  ATP  TPRRR QS+LLELER+VA N
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQ-QATP--TPRRRAQSRLLELERHVAIN 60

Query: 75  GCISMTIAL-TRRSLFPHTAFAS---------------------AREYFEVVKGDLHSLF 134
           GCI MTIA    + + P+    S                      REY EVVKGDL   F
Sbjct: 61  GCIPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFF 120

Query: 135 VLDFNDQAMNKFVEHQILSTFKEFRDDCHR 143
           VLDFNDQAMN+FVEHQ+++TFKEF+ DCHR
Sbjct: 121 VLDFNDQAMNRFVEHQMVTTFKEFQVDCHR 147

BLAST of MELO3C031949.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.7e-26
Identity = 75/139 (53.96%), Postives = 89/139 (64.03%), Query Frame = 0

Query: 4   SIILSYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQ 63
           S I S+P NNFL+TD M L+FA DLDNL GGSSS+ +N  SSS+P A  TLTP+R TQS+
Sbjct: 49  STISSFPRNNFLETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSA--TLTPKRHTQSR 108

Query: 64  LLELERYVAANGCISMTIALTRRSLFPHTAFASAREYFEVVKGDLHSLFVLDFNDQAMNK 123
           LLELE YV                        + REY EVVK DL   FVLDF+DQAMN 
Sbjct: 109 LLELECYV------------------------TGREYIEVVKADL-QFFVLDFSDQAMNT 160

Query: 124 FVEHQILSTFKEFRDDCHR 143
            VE+Q+ +TFKEF  DCH+
Sbjct: 169 SVEYQMSNTFKEFWGDCHK 160

BLAST of MELO3C031949.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-20
Identity = 60/110 (54.55%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 142 RSNHGRTRLLDRSSLTIIVEGQSRFYNDNTSSLSKEGSWSTMWSCFDKHMFQSKQS---- 201
           RSNH RTRLLDRSSLTIIV G S FYND+ SSL +EGS S +W+C +KH F+   S    
Sbjct: 17  RSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEEGSRSIVWNCSEKHTFELGHSCRRL 76

Query: 202 ---------NARTLIPAYLRGH------AIRCWVDDRATQKTLVGDPSRR 233
                    N+   +P  +  H      AIRCWVDD+ATQK LVGDPSRR
Sbjct: 77  PRMRIIKCWNSNPSLPQRIVTHSLRMKYAIRCWVDDQATQKALVGDPSRR 126

BLAST of MELO3C031949.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 8  SYPHNNFLKTDAMLLEFADDLDNLVGGSSSVGDNLGSSSRPYATPTLTPRRRTQSQLLEL 67
          SYP +NFL+TD M LEF D LDN  GGSSSVGDN+GSSS+     TLTPRR  QS+LL L
Sbjct: 4  SYPRHNFLETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQ--QPGTLTPRRHVQSRLLGL 63

Query: 68 ER 70
           R
Sbjct: 64 LR 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901035.11.2e-3456.96PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P... [more]
ADN34071.14.2e-3256.67CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
XP_016901155.11.0e-2553.96PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond... [more]
ADN34241.14.8e-2054.55NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
XP_016902990.12.0e-1066.13PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DZ93|A0A1S4DZ93_CUCME7.8e-3556.96uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=... [more]
tr|E5GC72|E5GC72_CUCME2.8e-3256.67CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME6.7e-2653.96LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O... [more]
tr|E5GCP2|E5GCP2_CUCME3.2e-2054.55NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S4E4T7|A0A1S4E4T7_CUCME1.3e-1066.13uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031949.2.1MELO3C031949.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..249

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None